mRNA_E-fasciculatus_F_contig14796.3422.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14796.3422.1
Unique NamemRNA_E-fasciculatus_F_contig14796.3422.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14796.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14796contigE-fasciculatus_F_contig14796:2165..3135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size907
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14796.3422.1prot_E-fasciculatus_F_contig14796.3422.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14796 2556..3135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927962.0666122-UTR-E-fasciculatus_F_contig14796:2164..25551622927962.0666122-UTR-E-fasciculatus_F_contig14796:2164..2555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14796 2165..2555 +
1695995768.7772856-UTR-E-fasciculatus_F_contig14796:2164..25551695995768.7772856-UTR-E-fasciculatus_F_contig14796:2164..2555Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14796 2165..2555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927962.0829694-CDS-E-fasciculatus_F_contig14796:2555..27501622927962.0829694-CDS-E-fasciculatus_F_contig14796:2555..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14796 2556..2750 +
1695995768.7861192-CDS-E-fasciculatus_F_contig14796:2555..27501695995768.7861192-CDS-E-fasciculatus_F_contig14796:2555..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14796 2556..2750 +
1622927962.0977805-CDS-E-fasciculatus_F_contig14796:2814..31351622927962.0977805-CDS-E-fasciculatus_F_contig14796:2814..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14796 2815..3135 +
1695995768.7993724-CDS-E-fasciculatus_F_contig14796:2814..31351695995768.7993724-CDS-E-fasciculatus_F_contig14796:2814..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14796 2815..3135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14796.3422.1

>prot_E-fasciculatus_F_contig14796.3422.1 ID=prot_E-fasciculatus_F_contig14796.3422.1|Name=mRNA_E-fasciculatus_F_contig14796.3422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
MAKKAKGVAAGSGGGGGGGGEPKPSPEKRKGKQGSSKGGAAAGKKPKSNG
VVAEKGAAVAVAAAAQHHQPRARRSQPKRRTQQTGSQQQQQQQQRRRPQA
PTSRKRKRRRSRPQENSSSSSGRTATLPSLPRRLPEPLPLRRRRLQLQAK
HRLRPRTRRVKALVLPRHRKRR
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mRNA from alignment at E-fasciculatus_F_contig14796:2165..3135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14796.3422.1 ID=mRNA_E-fasciculatus_F_contig14796.3422.1|Name=mRNA_E-fasciculatus_F_contig14796.3422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=971bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14796:2165..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACCTGTCAAGCATTCAAACACGACATGCACGACAGCGAGCATTGCTGAC
AGCTCACAACGGAAGTGTCAAGACGCAGCGAGACTCACCTTCCCGGCGGT
GCGTTCGCCGTTCGGTCTAGCAGCCCCCGTCGACGTCGCGTCCAAAGCAA
GCGCTCTCACCAGCAGCTAAAGGCTGCTTGTTGGCGGACCTCAGCCGTAC
CCTATCAAATCCATCACAAGGTCCACACCGCCGTGCAGGAGAACAATCGC
TGGCGGCACCCTTTTCCCAGACAACAGAGTTCGTCGGCCCGGTCCTGAGC
ACGTCGCGCTGAGTGCCAAAGAGCAATTCTGTGGCCTCTTGCTTCCGCCG
GGGTGATTTGTTTCGCGGGCGCGTTGAGAGAGCAGTACAGCATGGCGAAG
AAGGCCAAGGGTGTGGCTGCGGGGAGCGGAGGAGGAGGAGGAGGAGGAGG
CGAGCCCAAGCCCTCCCCGGAGAAGAGGAAGGGAAAACAGGGCAGCAGCA
AGGGGGGCGCTGCTGCTGGCAAGAAGCCGAAGTCAAACGGGGTGGTGGCG
GAGAAGGGGGCGGCTGTCGCTGTAGCAGCAGCAGCAGCAGCAGCAGCAGT
AGCTCCCGCCCCCAAGCCAAACAAATCGTCGGCGCCGGCAAACGGGACAG
CAGCATCATCAACCAAGGGCAAGACGAAGCCAACCAAAGCGGCGAACGCA
GCAAACGGGCAGCCAGCAGCAGCAGCAACAGCAGCAGCGTCGGCGCCCAC
AAGCCCCGACAAGCCGAAAGCGAAAAAGAAGAAGATCAAGACCCCAAGAA
AACAGCAGCAGCAGCAGCGGCAGGACGGCGACACTGCCGTCGCTGCCGCG
CCGCCTGCCGGAGCCGTTGCCGCTCCGCCGGCGGCGGCTGCAGCTCCAGG
CAAAGCATCGGCTGCGGCCAAGGACAAGAAGGGTAAAGGCGCTGGTACTC
CCAAGGCATCGAAAGCGGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14796:2165..3135+

>mRNA_E-fasciculatus_F_contig14796.3422.1 ID=mRNA_E-fasciculatus_F_contig14796.3422.1|Name=mRNA_E-fasciculatus_F_contig14796.3422.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14796:2165..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGAAGAAGGCCAAGGGTGTGGCTGCGGGGAGCGGAGGAGGAGGAGG
AGGAGGAGGCGAGCCCAAGCCCTCCCCGGAGAAGAGGAAGGGAAAACAGG
GCAGCAGCAAGGGGGGCGCTGCTGCTGGCAAGAAGCCGAAGTCAAACGGG
GTGGTGGCGGAGAAGGGGGCGGCTGTCGCTGTAGCAGCAGCAGCAATGGC
GAAGAAGGCCAAGGGTGTGGCTGCGGGGAGCGGAGGAGGAGGAGGAGGAG
GAGGCGAGCCCAAGCCCTCCCCGGAGAAGAGGAAGGGAAAACAGGGCAGC
AGCAAGGGGGGCGCTGCTGCTGGCAAGAAGCCGAAGTCAAACGGGGTGGT
GGCGGAGAAGGGGGCGGCTGTCGCTGTAGCAGCAGCAGCACAGCATCATC
AACCAAGGGCAAGACGAAGCCAACCAAAGCGGCGAACGCAGCAAACGGGC
AGCCAGCAGCAGCAGCAACAGCAGCAGCGTCGGCGCCCACAAGCCCCGAC
AAGCCGAAAGCGAAAAAGAAGAAGATCAAGACCCCAAGAAAACAGCAGCA
GCAGCAGCGGCAGGACGGCGACACTGCCGTCGCTGCCGCGCCGCCTGCCG
GAGCCGTTGCCGCTCCGCCGGCGGCGGCTGCAGCTCCAGGCAAAGCATCG
GCTGCGGCCAAGGACAAGAAGGGTAAAGGCGCTGGTACTCCCAAGGCATC
GAAAGCGGCGGCAGCATCATCAACCAAGGGCAAGACGAAGCCAACCAAAG
CGGCGAACGCAGCAAACGGGCAGCCAGCAGCAGCAGCAACAGCAGCAGCG
TCGGCGCCCACAAGCCCCGACAAGCCGAAAGCGAAAAAGAAGAAGATCAA
GACCCCAAGAAAACAGCAGCAGCAGCAGCGGCAGGACGGCGACACTGCCG
TCGCTGCCGCGCCGCCTGCCGGAGCCGTTGCCGCTCCGCCGGCGGCGGCT
GCAGCTCCAGGCAAAGCATCGGCTGCGGCCAAGGACAAGAAGGGTAAAGG
CGCTGGTACTCCCAAGGCATCGAAAGCGGCGG
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