mRNA_E-fasciculatus_F_contig14793.3421.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14793.3421.1
Unique NamemRNA_E-fasciculatus_F_contig14793.3421.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14793.3421.1 vs. uniprot
Match: D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 1.790e-139
Identity = 219/227 (96.48%), Postives = 222/227 (97.80%), Query Frame = 1 
Query:   16 DDSSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDAASQDXPQQGGGGMFGSPLQWPPQPHGMSPGQSKRS 696
            D+SSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLD+KAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDA+SQDX     GGMFGSPLQWPPQPHGMSPGQSKRS
Sbjct:  370 DESSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDAKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDASSQDXXXXXXGGMFGSPLQWPPQPHGMSPGQSKRS 596
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BLAST of mRNA_E-fasciculatus_F_contig14793.3421.1 vs. uniprot
Match: A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 2.310e-138
Identity = 221/232 (95.26%), Postives = 225/232 (96.98%), Query Frame = 1 
Query:    1 GAVVDDDSSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDAASQDXPQQGGGGMFGSPLQWPPQPHGMSPGQSKRS 696
            G VVD +SSLGLLYRLLLAEMQGNGS+GGLNNRWIDRDALLQLRGAATLAHHPKYLRHTA LPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDA+ QD PQQGGGGMFGSPL+WPPQ H MSPGQSKRS
Sbjct:  368 GGVVDGESSLGLLYRLLLAEMQGNGSTGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTAALPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDASPQDDPQQGGGGMFGSPLKWPPQTHDMSPGQSKRS 599
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BLAST of mRNA_E-fasciculatus_F_contig14793.3421.1 vs. uniprot
Match: A0A7S1TYQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 9.380e-31
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:  100 WIDRDALLQLRGAATLAHHPKYLRHT----ANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSL 555
            W D + L  L+G   LA  P+Y  H     A L   +RGVR     A+H +QE  A +L H++ ++L+FLD + ++ VR  AL   +P+ +LT  +L + L+ LA  DD+PY+VFL ++G+AV +S      +T  L N  SRVLFLL+TASDP+L
Sbjct:   97 WCDPEFLAALKGNCVLAQRPEYQNHALGLQAGLDTWSRGVRFSGDPASHVLQEVTAVALAHASRAKLVFLDERTLDGVRDSALEANVPQRYLTPARLVAGLVALAERDDAPYVVFLRNRGAAVTRSAAAMDVVTRALDNPRSRVLFLLATASDPTL 252
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BLAST of mRNA_E-fasciculatus_F_contig14793.3421.1 vs. uniprot
Match: A0A4D9DAG7_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAG7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.100e-27
Identity = 75/197 (38.07%), Postives = 108/197 (54.82%), Query Frame = 1 
Query:   40 YRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYL----RHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELA-------------GEDDSPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPS--LPGNPPA 573
            YR  L +++ +  + G    W+DRDAL+ LRG A L   P Y+    R   +LP   RG+R+  P +TH MQEALA +L HS G+ LL  D K +  VR  AL EG+PK+ L ++ +  ALLE+A              E + P+LVFL DKG   L+ + + + L + +    +R  FLLS+  +P   LP  PP+
Sbjct:  256 YRRFLQDLESDPRTLG-GKHWVDRDALVHLRGTALLCQRPDYVELLVRLRPSLP-FARGMRVEMPSSTHGMQEALAAALAHSVGAGLLMADQKRVAVVRRMALEEGVPKKFLGAKMVMGALLEVAQEGGTXXXXXXXXXEGEVPFLVFLADKGRPWLQHQDVTEALQKAVTATETRTFFLLSSEYEPDSLLPPLPPS 450
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14793.3421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRV9_ECTSI1.790e-13996.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCX2_9PHAE2.310e-13895.26AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1TYQ8_9STRA9.380e-3141.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9DAG7_9STRA7.100e-2738.07AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14793contigE-fasciculatus_F_contig14793:1..2718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002630.1
Exons5
Model size697
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14793.3421.1prot_E-fasciculatus_F_contig14793.3421.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14793 1..2717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.9596984-CDS-E-fasciculatus_F_contig14793:0..1261622927961.9596984-CDS-E-fasciculatus_F_contig14793:0..126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1..126 +
1695995768.728451-CDS-E-fasciculatus_F_contig14793:0..1261695995768.728451-CDS-E-fasciculatus_F_contig14793:0..126Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1..126 +
1622927961.972764-CDS-E-fasciculatus_F_contig14793:398..5901622927961.972764-CDS-E-fasciculatus_F_contig14793:398..590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 399..590 +
1695995768.73678-CDS-E-fasciculatus_F_contig14793:398..5901695995768.73678-CDS-E-fasciculatus_F_contig14793:398..590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 399..590 +
1622927961.9899743-CDS-E-fasciculatus_F_contig14793:1445..16091622927961.9899743-CDS-E-fasciculatus_F_contig14793:1445..1609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1446..1609 +
1695995768.745011-CDS-E-fasciculatus_F_contig14793:1445..16091695995768.745011-CDS-E-fasciculatus_F_contig14793:1445..1609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1446..1609 +
1622927962.0021582-CDS-E-fasciculatus_F_contig14793:1857..19901622927962.0021582-CDS-E-fasciculatus_F_contig14793:1857..1990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1858..1990 +
1695995768.7531571-CDS-E-fasciculatus_F_contig14793:1857..19901695995768.7531571-CDS-E-fasciculatus_F_contig14793:1857..1990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 1858..1990 +
1622927962.0164206-CDS-E-fasciculatus_F_contig14793:2636..27171622927962.0164206-CDS-E-fasciculatus_F_contig14793:2636..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 2637..2717 +
1695995768.7677875-CDS-E-fasciculatus_F_contig14793:2636..27171695995768.7677875-CDS-E-fasciculatus_F_contig14793:2636..2717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14793 2637..2717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14793.3421.1

>prot_E-fasciculatus_F_contig14793.3421.1 ID=prot_E-fasciculatus_F_contig14793.3421.1|Name=mRNA_E-fasciculatus_F_contig14793.3421.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
GAVVDDDSSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLA
HHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLD
SKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDDSPYLVFLMDKGS
AVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDAASQ
DDPQQGGGGMFGSPLQWPPQPHGMSPGQSKRS
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mRNA from alignment at E-fasciculatus_F_contig14793:1..2718+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14793.3421.1 ID=mRNA_E-fasciculatus_F_contig14793.3421.1|Name=mRNA_E-fasciculatus_F_contig14793.3421.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2718bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14793:1..2718+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCGGTGGTCGACGATGACTCGTCGCTGGGGCTGCTGTACCGGCTGCT
GCTGGCGGAGATGCAGGGGAATGGGTCCTCGGGGGGGCTGAACAACCGCT
GGATTGACCGCGACGCGCTCTTGCAGGTAAGGGATAAAAGTAGGGAGGGG
TTGTGTGTGGAGAGTGACCGTCAGTACTCGACAGCGGTGTCGCATTTGCA
CCGACTGCGGCAATAGCTGTTTTATCTGGGGTGACAGAAATCGTGCGGTT
TGCAACCCTGTCGTCCTTCCCCCCCGTCCCTTTTCGCCATCGTCAATGTG
GTATCAGGTATCAGGTATCTGTAACGTCTGCCTCTGCTTGTACCCGTCTC
CTCCGTGTATTTCTCTTCCCCCGCCCTTGCCGCCCCTGTCCCGAACAGCT
GAGAGGCGCCGCCACGCTCGCCCACCACCCCAAGTACCTCCGCCACACCG
CAAACCTGCCGAGAGTCACTCGTGGCGTAAGGCTGGTGGCGCCGGAGGCC
ACGCACAGCATGCAGGAGGCCCTCGCCCGTTCGCTGGGGCACAGCACGGG
CAGCAGGTTGTTGTTCCTGGACTCGAAGGCGATAGAGGCGGTGAGTCGTG
AGTCTTGCTTGGCACGCAAGAGCAGTCAGTGCACGAAACGAAACATTGTG
TTGTCTGTTGTTTTTTTGTAAAGCCACCACCTGCTGTCGCCAGGCTGTAT
GCGCCCTCTGTTTGTGTTGTATGTGACTTGGGCATTTGTTCTGCCTCCGT
CTGTTGGACCTATGTTTTGGTTGGTGGGTACGGAACATGGAAAAGTATGG
AGGGGAGAGCAAGCTGGGTATGTTAAGAGATCAGAACAGCAGTTACGATG
TGAAGACTTAACAATGGAGAGCATCGTCAGAATATGGTGGAATCGACATA
GTTGATGCAGAGCTTGCGCCCCTGTCCAACAAAGGCGATTGGATGAGCGA
GCGCTCTTGTGCCCCACACTACAAGGACCACAGCGATAGCACCAGCAGCA
GCATTGCTTTAGCATAGCATGGCTGTCGATTCGATGGCATCCGATGCGGA
CAGCGACCCATGTATCAACCGCACGAGGTTTTGGTCCCTCCCTCTCGATG
TCTTTGCTGTTTGTCTGTCCGACTCGGGGACAAACAGCAAAGGCATCGAG
AAAGATCGCCAAGTGTCTAGCGTAAGATGGCTGTCTTATCCCTCTGAATC
TCATCGCACTTACGTCGGTAGTCTACGCCACAGAACTTGTTCTAGAAATA
GGATCACGTTTGATGCGGTGGACACGAAGACACTTGCACGCGAGCGTAAC
TTCCTTCCGGACTGCGCAACCCTTCTCAATAGACAGTGGTCACTTCGATG
TATATTATTTTCTCTTGTTTGTCAATTTTTGTTTCACTGTCTGTGCTCGG
TGAAACCGCTCCCTTGCGGTGGTGGGATGTCTTCGTTTTTGTCAGGTTCG
AGGACAGGCTCTTGCGGAGGGCATCCCGAAGGAGCACCTCACCTCGAGGC
AGCTCGCGTCCGCCCTGCTTGAGCTCGCAGGAGAGGACGACTCGCCCTAC
CTCGTGTTCCTCATGGACAAGGGCAGCGCCGTGCTCAAGAGCAGGGGCAT
GTGCCAGAGGTGAGAGGGAGGGTGGCGGGAGAGAGGGACCGACCGTTGCA
CTCCCACTGCATACCCGACAAAGTTGAACACACAGCAGCCATCCCGGGGA
CTGCTGCTGTTGTCGTCCAACAACGTTCCAAAGCAAGAACGACCCCCCCC
CGCCCCTCCCCTCCTGATCCAGAGCTCTGATCTATAACCTTTAGCCACCC
CAGTACCGCCGCTCCTTCCCCGAACCTCATTTCTTGAACAATTTAAAATG
ACAACAGGCTGACAGAAGAGTTGAAGAACGAGTCGTCTCGGGTGCTGTTC
CTGCTGTCCACCGCGAGCGATCCCTCCTTGCCGGGAAACCCGCCGGCCGG
ACCTGGCGACGACGCGGCCTCACAGGACGACCCCCAGCAGGTGTGCAGTG
TTGACTTTCTTCTCTGTTTCCTCCCTTGTGTTGAGGAGGAGGAGCGAATA
TGTGTGAAGAGGCTTTGGTCTTACTCTGTTTATTCTCTCTGTGTGTTGAA
CGAGCAGTATGTGTCATGATTTTTGGTCTTCTCGGTTTGTCTCTCTGGGT
TGCGAAATAGCAGTATGTGTCATGATTTTTGGTCTTCTCTGCTTGTTCTC
TCTGGGTTGCGAAATAGCAGTATGTGTCATGATTTTTGGCCTTCTCGGTT
TGTTCTCTCTGGGTTGGGTTGCGAGCTAGGGAATTAAGTACTGATTGTTG
GGGGCAGTTGTGCTGAAACAGAGAACCGGCGCATGGTGTCGGCGTGCTCT
CTTTAAGTAACCTTTTTTGTTGGTTGGTCTGGATGATGTGACTTCTCCGT
GCGTTCTGTCTCACTCACTGCGCACGACGCGGATTGACTTATATGCACGG
TGGCGTGATTGACATGGTGTCCCGTGTGTTTAGTCACCGATTTGCGGTAT
GCATTCGTTCGCACGAAGCACCAGTACAATATTGTTGTGGTGCCATGGCG
TCAAGCGTGAGGTGGTGTGGTTTTGATTGGACTATATCATGCGATGCTTG
ATGTTTGTGTGATGCGGCGTAACGTTTGTGTGGCAGGGTGGTGGCGGCAT
GTTCGGTTCGCCACTTCAGTGGCCTCCCCAGCCCCACGGCATGTCTCCAG
GACAGTCCAAACGCTCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14793:1..2718+

>mRNA_E-fasciculatus_F_contig14793.3421.1 ID=mRNA_E-fasciculatus_F_contig14793.3421.1|Name=mRNA_E-fasciculatus_F_contig14793.3421.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14793:1..2718+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGCGGTGGTCGACGATGACTCGTCGCTGGGGCTGCTGTACCGGCTGCT
GCTGGCGGAGATGCAGGGGAATGGGTCCTCGGGGGGGCTGAACAACCGCT
GGATTGACCGCGACGCGCTCTTGCAGGGGGCGGTGGTCGACGATGACTCG
TCGCTGGGGCTGCTGTACCGGCTGCTGCTGGCGGAGATGCAGGGGAATGG
GTCCTCGGGGGGGCTGAACAACCGCTGGATTGACCGCGACGCGCTCTTGC
AGCTGAGAGGCGCCGCCACGCTCGCCCACCACCCCAAGTACCTCCGCCAC
ACCGCAAACCTGCCGAGAGTCACTCGTGGCGTAAGGCTGGTGGCGCCGGA
GGCCACGCACAGCATGCAGGAGGCCCTCGCCCGTTCGCTGGGGCACAGCA
CGGGCAGCAGGTTGTTGTTCCTGGACTCGAAGGCGATAGAGGCGCTGAGA
GGCGCCGCCACGCTCGCCCACCACCCCAAGTACCTCCGCCACACCGCAAA
CCTGCCGAGAGTCACTCGTGGCGTAAGGCTGGTGGCGCCGGAGGCCACGC
ACAGCATGCAGGAGGCCCTCGCCCGTTCGCTGGGGCACAGCACGGGCAGC
AGGTTGTTGTTCCTGGACTCGAAGGCGATAGAGGCGGTTCGAGGACAGGC
TCTTGCGGAGGGCATCCCGAAGGAGCACCTCACCTCGAGGCAGCTCGCGT
CCGCCCTGCTTGAGCTCGCAGGAGAGGACGACTCGCCCTACCTCGTGTTC
CTCATGGACAAGGGCAGCGCCGTGCTCAAGAGCAGGGGCATGTGCCAGAG
GTTCGAGGACAGGCTCTTGCGGAGGGCATCCCGAAGGAGCACCTCACCTC
GAGGCAGCTCGCGTCCGCCCTGCTTGAGCTCGCAGGAGAGGACGACTCGC
CCTACCTCGTGTTCCTCATGGACAAGGGCAGCGCCGTGCTCAAGAGCAGG
GGCATGTGCCAGAGGCTGACAGAAGAGTTGAAGAACGAGTCGTCTCGGGT
GCTGTTCCTGCTGTCCACCGCGAGCGATCCCTCCTTGCCGGGAAACCCGC
CGGCCGGACCTGGCGACGACGCGGCCTCACAGGACGACCCCCAGCAGGCT
GACAGAAGAGTTGAAGAACGAGTCGTCTCGGGTGCTGTTCCTGCTGTCCA
CCGCGAGCGATCCCTCCTTGCCGGGAAACCCGCCGGCCGGACCTGGCGAC
GACGCGGCCTCACAGGACGACCCCCAGCAGGGTGGTGGCGGCATGTTCGG
TTCGCCACTTCAGTGGCCTCCCCAGCCCCACGGCATGTCTCCAGGACAGT
CCAAACGCTCGGGTGGTGGCGGCATGTTCGGTTCGCCACTTCAGTGGCCT
CCCCAGCCCCACGGCATGTCTCCAGGACAGTCCAAACGCTCG
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