mRNA_E-fasciculatus_F_contig1479.3420.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1479.3420.1
Unique NamemRNA_E-fasciculatus_F_contig1479.3420.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1479.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1479contigE-fasciculatus_F_contig1479:7622..8508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size628
Cds size627
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.8936937-CDS-E-fasciculatus_F_contig1479:7621..78131622927961.8936937-CDS-E-fasciculatus_F_contig1479:7621..7813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 7622..7813 -
1695995768.7111409-CDS-E-fasciculatus_F_contig1479:7621..78131695995768.7111409-CDS-E-fasciculatus_F_contig1479:7621..7813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 7622..7813 -
1622927961.9097223-CDS-E-fasciculatus_F_contig1479:8073..85081622927961.9097223-CDS-E-fasciculatus_F_contig1479:8073..8508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 8074..8508 -
1695995768.7195976-CDS-E-fasciculatus_F_contig1479:8073..85081695995768.7195976-CDS-E-fasciculatus_F_contig1479:8073..8508Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1479 8074..8508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1479.3420.1prot_E-fasciculatus_F_contig1479.3420.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1479 7622..8508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1479.3420.1

>prot_E-fasciculatus_F_contig1479.3420.1 ID=prot_E-fasciculatus_F_contig1479.3420.1|Name=mRNA_E-fasciculatus_F_contig1479.3420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
KKPDDRAVIGRDEVRWLTRKLRGRNGKSVAILRMRALLEPEETGRKRQPG
RKGQVERHQYHRHHYHDTSQCGRSSRGSERRRRGNGSTAGDGEEGGGGTT
SESTCSGSGRGDASWQRRSSPPPPARWAIRQGTVGHWLHEVAAPMERKLF
FEFIKDLEKFELRNGLDHYRVRPSPKARRRNGSSGDDDDGTTVLHLGPML
KASIKFYV*
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mRNA from alignment at E-fasciculatus_F_contig1479:7622..8508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1479.3420.1 ID=mRNA_E-fasciculatus_F_contig1479.3420.1|Name=mRNA_E-fasciculatus_F_contig1479.3420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=887bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1479:7622..8508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAAACCTGATGACAGGGCCGTTATCGGGCGCGATGAAGTGCGCTGGCT
CACACGCAAGTTGAGGGGAAGGAACGGCAAGAGCGTGGCCATCTTGAGAA
TGAGAGCTCTGCTAGAACCGGAGGAGACGGGGCGGAAGCGACAGCCTGGC
AGAAAAGGACAGGTGGAGCGGCATCAATATCATCGCCATCACTATCACGA
CACTTCGCAGTGCGGGCGAAGCTCACGAGGAAGCGAGAGGAGACGTCGAG
GCAACGGGTCCACCGCCGGTGATGGGGAAGAGGGCGGGGGAGGAACCACG
AGTGAGTCCACATGTAGTGGAAGCGGACGGGGGGACGCTTCTTGGCAACG
GCGGTCGTCGCCTCCACCTCCCGCGAGATGGGCGATTCGGCAGGGCACAG
TGGGGCATTGGCTGCACGAAGTGGCTGCCCCGATGGTAAGATGAGGGACG
GACCATATGCTACATGAATCCTACACTGCTCTTGTAGGACGTTTTCCCGC
TCGACCCAAGGCTATCAACCTACACGCAATACTTGAGGCTGGAGGCGGTA
GAGAGACTGCTTGTTGTCGGCAAAAACTCAGAAATCCGTATGCTACCGTA
GCTGGGTGATGTGGATCACGGGAGCGGGAAACCCGTGTCCCGCCCAGAGA
TCATGACGCCCTAACTCTGTCCTGCTGGCTTCCCGGATGCAATAGGAAAG
AAAGCTGTTCTTCGAGTTCATCAAAGATCTCGAAAAGTTCGAGCTCCGAA
ACGGGCTCGACCACTACCGCGTGCGCCCGAGCCCAAAGGCGAGAAGAAGA
AACGGCTCCTCCGGCGACGACGATGATGGCACAACAGTGCTGCACCTTGG
CCCCATGCTAAAGGCATCAATTAAGTTTTACGTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1479:7622..8508-

>mRNA_E-fasciculatus_F_contig1479.3420.1 ID=mRNA_E-fasciculatus_F_contig1479.3420.1|Name=mRNA_E-fasciculatus_F_contig1479.3420.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1479:7622..8508- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAAAACCTGATGACAGGGCCGTTATCGGGCGCGATGAAGTGCGCTGGCT
CACACGCAAGTTGAGGGGAAGGAACGGCAAGAGCGTGGCCATCTTGAGAA
TGAGAGCTCTGCTAGAACCGGAGGAGACGGGGCGGAAGCGACAGCCTGGC
AGAAAAGGACAGGTGGAGCGGCATCAATATCATCGCCATCACTATCACGA
CACTTCGCAGTGCGGGCGAAGCTCACGAGGAAGCGAGAGGAGACGTCGAG
GCAACGGGTCCACCGCCGGTGATGGGGAAGAGGGCGGGGGAGGAACCACG
AGTGAGTCCACATGTAGTGGAAGCGGACGGGGGGACGCTTCTTGGCAACG
GCGGTCGTCGCCTCCACCTCCCGCGAGATGGGCGATTCGGCAGGGCACAG
TGGGGCATTGGCTGCACGAAGTGGCTGCCCCGATGAAAAAACCTGATGAC
AGGGCCGTTATCGGGCGCGATGAAGTGCGCTGGCTCACACGCAAGTTGAG
GGGAAGGAACGGCAAGAGCGTGGCCATCTTGAGAATGAGAGCTCTGCTAG
AACCGGAGGAGACGGGGCGGAAGCGACAGCCTGGCAGAAAAGGACAGGTG
GAGCGGCATCAATATCATCGCCATCACTATCACGACACTTCGCAGTGCGG
GCGAAGCTCACGAGGAAGCGAGAGGAGACGTCGAGGCAACGGGTCCACCG
CCGGTGATGGGGAAGAGGGCGGGGGAGGAACCACGAGTGAGTCCACATGT
AGTGGAAGCGGACGGGGGGACGCTTCTTGGCAACGGCGGTCGTCGCCTCC
ACCTCCCGCGAGATGGGCGATTCGGCAGGGCACAGTGGGGCATTGGCTGC
ACGAAGTGGCTGCCCCGATGGAAAGAAAGCTGTTCTTCGAGTTCATCAAA
GATCTCGAAAAGTTCGAGCTCCGAAACGGGCTCGACCACTACCGCGTGCG
CCCGAGCCCAAAGGCGAGAAGAAGAAACGGCTCCTCCGGCGACGACGATG
ATGGCACAACAGTGCTGCACCTTGGCCCCATGCTAAAGGCATCAATTAAG
TTTTACGTTTGAGAAAGAAAGCTGTTCTTCGAGTTCATCAAAGATCTCGA
AAAGTTCGAGCTCCGAAACGGGCTCGACCACTACCGCGTGCGCCCGAGCC
CAAAGGCGAGAAGAAGAAACGGCTCCTCCGGCGACGACGATGATGGCACA
ACAGTGCTGCACCTTGGCCCCATGCTAAAGGCATCAATTAAGTTTTACGT
TTGA
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