mRNA_E-fasciculatus_F_contig14786.3417.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14786.3417.1
Unique NamemRNA_E-fasciculatus_F_contig14786.3417.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14786.3417.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.890e-29
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 3 
Query:    3 MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGGGQEGSAGSNGPAAGKGSRRPSAAGKAN 230
            MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGGGQE SAGSNGPAAGKGS  P + GKAN
Sbjct:  366 MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGGGQERSAGSNGPAAGKGSPLPRSTGKAN 441
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BLAST of mRNA_E-fasciculatus_F_contig14786.3417.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.800e-15
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 3 
Query:    3 MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGGG 152
            MVFIAGEGGGAGSRLTQDVG+ILAQLPETVEALTGVDITKGL+R +G GG
Sbjct:  388 MVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTGVDITKGLDRMVGSGG 437
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BLAST of mRNA_E-fasciculatus_F_contig14786.3417.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.310e-9
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 3 
Query:    3 MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTG 107
            MVFIAG+GGGAGSRLTQDVGNILAQLPETV+ALTG
Sbjct:  139 MVFIAGDGGGAGSRLTQDVGNILAQLPETVQALTG 173
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14786.3417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1I5_ECTSI2.890e-2992.11PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I4_ECTSI3.800e-1590.00PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K3X4_9PHAE2.310e-994.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14786contigE-fasciculatus_F_contig14786:74..2018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.6e-27
Seed eggNOG ortholog2880.D7G1I5
Preferred nameFLOT2
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size1343
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14786.3417.1prot_E-fasciculatus_F_contig14786.3417.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14786 76..908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.6186934-UTR-E-fasciculatus_F_contig14786:73..751622927961.6186934-UTR-E-fasciculatus_F_contig14786:73..75Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14786 74..75 +
1695995768.5866032-UTR-E-fasciculatus_F_contig14786:73..751695995768.5866032-UTR-E-fasciculatus_F_contig14786:73..75Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14786 74..75 +
1622927961.6658833-UTR-E-fasciculatus_F_contig14786:908..20181622927961.6658833-UTR-E-fasciculatus_F_contig14786:908..2018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14786 909..2018 +
1695995768.620603-UTR-E-fasciculatus_F_contig14786:908..20181695995768.620603-UTR-E-fasciculatus_F_contig14786:908..2018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14786 909..2018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927961.630336-CDS-E-fasciculatus_F_contig14786:75..1811622927961.630336-CDS-E-fasciculatus_F_contig14786:75..181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14786 76..181 +
1695995768.6026723-CDS-E-fasciculatus_F_contig14786:75..1811695995768.6026723-CDS-E-fasciculatus_F_contig14786:75..181Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14786 76..181 +
1622927961.6457503-CDS-E-fasciculatus_F_contig14786:783..9081622927961.6457503-CDS-E-fasciculatus_F_contig14786:783..908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14786 784..908 +
1695995768.6118777-CDS-E-fasciculatus_F_contig14786:783..9081695995768.6118777-CDS-E-fasciculatus_F_contig14786:783..908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14786 784..908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14786.3417.1

>prot_E-fasciculatus_F_contig14786.3417.1 ID=prot_E-fasciculatus_F_contig14786.3417.1|Name=mRNA_E-fasciculatus_F_contig14786.3417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp
MVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGGGG
QEGSAGSNGPAAGKGSRRPSAAGKAN*
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mRNA from alignment at E-fasciculatus_F_contig14786:74..2018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14786.3417.1 ID=mRNA_E-fasciculatus_F_contig14786.3417.1|Name=mRNA_E-fasciculatus_F_contig14786.3417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1945bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14786:74..2018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATGGTCTTCATCGCTGGCGAGGGCGGGGGTGCCGGCAGCCGGCTCACG
CAAGACGTCGGCAACATCCTGGCGCAACTCCCCGAAACCGTTGAGGCGCT
GACGGGAGGTAACTTACGGTAGATTTTGCCGGGCCCGGTTGCGACAAAGC
CAGAGACGCCGCGACTCGATTTCCCAAACTTTGCAAAGATTACTGGCCAA
CAACCCGGGAGTAGTGTGTGTTTTGACCATATTGTACCAGCATCCCATGC
GCTATCCGGGGGTCTCCGTGCAACAACAACGGAATGGTGCGTGTTATGTT
GTGACCATATTGTCCTACACTAGCACCCCATGGTCTATCCGCGGGTCTCC
GCGCCGACCCTGACTATTATACGATATTGCCTGCTCTACTTGCGGCGAGG
CAATGTTGCTAGCAGAGTAGCAGGGTGGTCCTTTGTCGGGAATCACCTTC
TGGATGTTGCACATTCGCTGGTAGCGTAACCGTGTCACCGCCTGAAGCAT
CCTCTGCTTCTTAGCGCCCATCAGACACTCAACTGTTGTAGTCCATACCA
TGCGGCTCTCCTTCATGTTTCTCGTCGTCCCAGGCTCCTTGGTTATCTAA
ATTAATATCCAATGCGTTCATGTAAAAAATCGACTTGCTTTCTACACAAC
GACAAAGAAGGCCGCCGCATGCATCTGAAGCCCCCCGTCACTTTTTGTCT
CTTCTCGCAGTCGACATAACCAAGGGTTTGGAGCGCTACCTTGGGGGCGG
GGGGCAAGAGGGGTCTGCAGGAAGCAACGGACCTGCGGCCGGCAAGGGAT
CCCGCCGCCCCTCTGCCGCCGGAAAAGCGAATTAACGCAAACCGTGGCAC
AACTCTACTACTTGTGACAGCATCTTGGTAGTAAATCGTCGACACGGAGG
AGAGCGTATCTCCTGCGTTCGCATGCACGCACACGTTGTTTAGTTGATGT
TGTTATGTTTTCCAGACACTGCGCTGAACGGCTGGCCGTTGGAGGTGTAC
ATAATGTCAAGGTAGAAAGGAAGCGACGGCCTTTGCGGCCGTCTTCGGGG
CGTGGGACGCTGACCATGACCGCTAACCCTGCCTGAAGTTCGTGTCGGCG
AATTGTTGTTGGCGTTTTGTTTTTTTTGGGGATTGCAAGGAGGCCGCCTT
TCTGTCACGCCGCCCTGCTCGTAATTGTCCAAGCAGCGAAGAGCGCACGT
AGCTCAGCCGGTCTGGCCTCTCTTTATGGTGTGTCAATACCGCGAAAGGA
CGTGGATTTCGGGCTCGGCAAGGGGGGCGTTTGTGATGTCTTTGCGGAGG
GATACAGTCGCCCATCTTTGTTGTGTATGTCTATTATCGTGAAGCAACAG
CAAAAAGTTCGACTGCAACCTGCAGTTGGATGCTCACCTCACACTAAGGA
AGCCTGTTGATTAGTCGTGTAACCGTCTGATTTTCGTACAATTGTTGTTA
TGTTCTCAGCCGAACCTGTTCAATGGAAGCACTTTTCCTATTGTTGGTAT
GAGAGATATATAATACCGTATATTTTTCAAATCGTGAACAGCACCGTTTT
TTGTAAGTCTTTTTTGATGGAAGTGCATCAAGTACAAACGCGGGCAACAA
ACATTGCGTGGGAACCCGATAACTCGAATACGACGGGGGGGCTCCTTTGG
CGTAGAGACACAAGAATTTGAACGTCGACACTTCCTCGAGTTAAACGTGC
GTCGAGCGAGTGCGGACCCACGTGGGAGGTCATCGTTGCTGGTAGCTGGC
TGGCTTGATTTGTTTTTCGTTACTGATTAGTCGCCATGTGCGCGGTCTTG
CTCCGTGTTGAGCACGCACGCGCTTAAGGGAGGCTGACGGATGCGGCCAG
TTCGAGCAATGGTAGCTTGCAACAAGGTTTCCGTTTTCGTTCTGCTGGTT
AGTTGGATCAACACTATTTTCCCCGTGACAATGCAACAATCCAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14786:74..2018+

>mRNA_E-fasciculatus_F_contig14786.3417.1 ID=mRNA_E-fasciculatus_F_contig14786.3417.1|Name=mRNA_E-fasciculatus_F_contig14786.3417.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14786:74..2018+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCTTCATCGCTGGCGAGGGCGGGGGTGCCGGCAGCCGGCTCACGCA
AGACGTCGGCAACATCCTGGCGCAACTCCCCGAAACCGTTGAGGCGCTGA
CGGGAGATGGTCTTCATCGCTGGCGAGGGCGGGGGTGCCGGCAGCCGGCT
CACGCAAGACGTCGGCAACATCCTGGCGCAACTCCCCGAAACCGTTGAGG
CGCTGACGGGAGTCGACATAACCAAGGGTTTGGAGCGCTACCTTGGGGGC
GGGGGGCAAGAGGGGTCTGCAGGAAGCAACGGACCTGCGGCCGGCAAGGG
ATCCCGCCGCCCCTCTGCCGCCGGAAAAGCGAATTAATCGACATAACCAA
GGGTTTGGAGCGCTACCTTGGGGGCGGGGGGCAAGAGGGGTCTGCAGGAA
GCAACGGACCTGCGGCCGGCAAGGGATCCCGCCGCCCCTCTGCCGCCGGA
AAAGCGAATTAA
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