mRNA_E-fasciculatus_F_contig14779.3415.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14779.3415.1
Unique NamemRNA_E-fasciculatus_F_contig14779.3415.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14779.3415.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI)

HSP 1 Score: 482 bits (1240), Expect = 4.350e-162
Identity = 306/340 (90.00%), Postives = 314/340 (92.35%), Query Frame = 1 
Query:    1 QVCRLATGKSTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXX---TFPVANGAGFWLAVVTAPRAFVSRQRQRLRRLKRRIAAAGGAENGYRTTPLGAGGXXXXXXXXXXXXXXXXSR----SRRYGSRAGGSGESMATPKGGEKRLRGRGDPSPWRLASGGDTAAVSPVEGEASPAAAXXXAARGGVVGHVWVALKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLVQLVGMSLLVSYCVTLTLRAFHSTRCRASFNCDHETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV 999
            +VCRLATGK+TRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXX     PVANGAGFWLAVVTAPRAF++RQRQRLRRLKRRIAAAGGAENGYRTTPLGA  XXXXXXXXXXXXXXXX      SRR+GSRAGG GESMATP GG K LRGRGD   WRLASGGDTAAVSPVEGEA PAAA   AARGGVVGHVWV+LKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVL+QL GMSLLVSYCVTLTLRAFHSTRCRA+FNCD ETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV
Sbjct:   40 EVCRLATGKTTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXXXXXVLPVANGAGFWLAVVTAPRAFLARQRQRLRRLKRRIAAAGGAENGYRTTPLGAXXXXXXXXXXXXXXXXXXXXXXXXSRRHGSRAGGPGESMATPTGGGKHLRGRGDL--WRLASGGDTAAVSPVEGEAGPAAAAA-AARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLLQLAGMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV 376
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14779.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSM1_ECTSI4.350e-16290.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14779contigE-fasciculatus_F_contig14779:252..2720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.7
Seed ortholog evalue1.7e-134
Seed eggNOG ortholog2880.D7FSM1
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-04_000540.1
Exons3
Model size1011
Cds size1011
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14779.3415.1prot_E-fasciculatus_F_contig14779.3415.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14779 252..2720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.9511745-CDS-E-fasciculatus_F_contig14779:251..3741622927960.9511745-CDS-E-fasciculatus_F_contig14779:251..374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 252..374 -
1695995768.251657-CDS-E-fasciculatus_F_contig14779:251..3741695995768.251657-CDS-E-fasciculatus_F_contig14779:251..374Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 252..374 -
1622927960.9712749-CDS-E-fasciculatus_F_contig14779:1161..13451622927960.9712749-CDS-E-fasciculatus_F_contig14779:1161..1345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 1162..1345 -
1695995768.2616158-CDS-E-fasciculatus_F_contig14779:1161..13451695995768.2616158-CDS-E-fasciculatus_F_contig14779:1161..1345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 1162..1345 -
1622927960.9875796-CDS-E-fasciculatus_F_contig14779:2016..27201622927960.9875796-CDS-E-fasciculatus_F_contig14779:2016..2720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 2017..2720 -
1695995768.2704976-CDS-E-fasciculatus_F_contig14779:2016..27201695995768.2704976-CDS-E-fasciculatus_F_contig14779:2016..2720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14779 2017..2720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14779.3415.1

>prot_E-fasciculatus_F_contig14779.3415.1 ID=prot_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=337bp
QVCRLATGKSTRLPLLSPSALWQYERSKSAAAAAIAAAAYPALAAASSSS
STFPVANGAGFWLAVVTAPRAFVSRQRQRLRRLKRRIAAAGGAENGYRTT
PLGAGGARVWWILPPPPPPPAASRSRRYGSRAGGSGESMATPKGGEKRLR
GRGDPSPWRLASGGDTAAVSPVEGEASPAAAAAAAARGGVVGHVWVALKL
RDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLV
QLVGMSLLVSYCVTLTLRAFHSTRCRASFNCDHETDPKLASLREWQTLAD
NMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKVTKG*
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mRNA from alignment at E-fasciculatus_F_contig14779:252..2720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14779.3415.1 ID=mRNA_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14779:252..2720- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCCTGTC
CCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCCGCCG
CCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTCCTCT
TCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCGTGAC
GGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGGCTCA
AGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCACCACC
CCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCACCGCC
GCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCTGGGG
GCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCTCCGG
GGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACACGGC
TGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCTGCTG
CCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAAGCTG
CGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACATGGC
CAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAGGCCA
AGAGGTGGGGTTGGAGTGCTGTAGCGGTTACGGCGGTGGTTGGAGGCCTT
CGTCATTGGTTGTGATATGCTGCTGCTGTTACTGTTGTTCTTGTTCTTGT
TCTTGTTGCTGTTGCTGCTGTTGTTCCTATTGTTGCTGTTGCTGCCGCTG
CTGTTGGACGTTGTTGCTGTGGTCGCTGTTTTGTGTTGGTTGTCGGTGTG
GTTGTGGTTATCGTTGTTGGCTGGCAGCGTAAGTGTTGTTTCATCCTTGT
GCATTGCTCGTGCCTGGCCTGGGCCCTTGGGTTACCCTGACTTTCTCCGT
TGTGGTGAACAGCGGTCTACGGCGAAAAAGGACACAAGCCAACACCAGAG
ACAGACCTGAAACACCCAACAACTTCGAAGAAATCAGTGGTATAAACAAG
AACAGGAGTAACCCTAACCCTAGCCCTAGCCCTACATCGCTGTCCCTCTC
TGGATGTAGAAGAAACGGCTGCAAGCTGCACGCGAACAGTAGTGTTTGTA
TTGTTTTTGGTCGCCAGCAGTTGATTTATTTACTTTACCGACCGATTTTC
TGTTTGATGCACGCGATCTACATCGCTGCCCCGCTCCGGACGCAATAGAT
GTTTTTTCTTGTCCGTTTACCAACCGATATCCTGTTTGATGCACGCGACA
CGAATGATGGGCCCCACCGAGGCAGGCTGTGGATGTTCATGCCCGGGATC
TCTCTTTGGAGAGTGCTGGTGCAGCTGGTTGGTATGTCGCTGCTGGTGAG
CTACTGCGTAACCCTCACCCTGCGGGCCTTCCACAGCACCCGCTGCAGGG
CCTCCTTCAACTGCGACCACGAAACCGATCCCAAGCTCGCCAGCCTTCGA
GAGTGGCAGGTGAAAAACAAAGAAAACGGTAGATATGAAAGCACAGCCAA
ACGCTTGAATCGTCCTGAACGGGTAGTCTCTCTGTGATTGTATGAATGAT
TGTCTGACAAATCTTGTCGGAGTGTATGGGATTGCATGAAATGAGTGCGG
TCTTTCCCACCATTTTCCGCTGGGGAAGACATCCGTTGTATTGTGGCCAG
CCTCCGAGAGTGGCAGGTGATATAACAACTGAATATTAATTTTTTTCGGG
GATCAATATCAAATGTGTGTGTGCTTTGTTTTGTTTTGTTGTAATTATTT
AATTTTTGGTTTTGGGGACGCAATATATAAAAACATTTGTATGAAATTAC
GGCGAAATAATAAGATGCTGTGTTGATGTTTTTGCTGGATGTTCTAGCTG
TTGTTGCTGTAAATTCTAGCTGTCGTCGTCGTCGTCGTCGTTATCGCCGT
TGTTGTTGTTACTGCTGCCGTTGTCGTTGTTACTGCTGCCGTTGATATAA
GCTTCGACTCAAATATGAAATTTCAGGATCGTTGTTGTTACTGCTGCCGT
TGTTGTTGTTACTGCTGCCGTTGTTGTTGTTACTGCTGCCGTTGCTGTTG
TTACTGCTGCCGTTGCTGTTGTTACTGCTGCCGTTGTCACCGTTGCCGTT
TGCGTTTGTTCTTGCCGTTGTTCTTGCTGCCGCTCTCCCCTTACCCTTCC
GCGACGTCGGGGGCATTAACAACCCCCACCCCCACTCCTTTCGGTCGCGT
CTAACGCATGTCGTCGTGTGATAATTCTTCACTTGGTGCCGCGAAGACCC
TCGCCGACAACATGCTGAGCGCCTTGTCCTTCCTAGACATGCTGCTTCAG
TTCCGCACCGGCTACGTCGACAAGAACTCCAAGATCATCATCGACCCTAA
GAAGGTGACAAAAGGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14779:252..2720-

>mRNA_E-fasciculatus_F_contig14779.3415.1 ID=mRNA_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2022bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14779:252..2720- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCCTGTC
CCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCCGCCG
CCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTCCTCT
TCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCGTGAC
GGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGGCTCA
AGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCACCACC
CCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCACCGCC
GCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCTGGGG
GCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCTCCGG
GGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACACGGC
TGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCTGCTG
CCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAAGCTG
CGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACATGGC
CAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAGGCCA
AGAGCAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCC
TGTCCCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCC
GCCGCCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTC
CTCTTCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCG
TGACGGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGG
CTCAAGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCAC
CACCCCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCAC
CGCCGCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCT
GGGGGCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCT
CCGGGGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACA
CGGCTGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCT
GCTGCCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAA
GCTGCGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACA
TGGCCAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAG
GCCAAGAGGCTGTGGATGTTCATGCCCGGGATCTCTCTTTGGAGAGTGCT
GGTGCAGCTGGTTGGTATGTCGCTGCTGGTGAGCTACTGCGTAACCCTCA
CCCTGCGGGCCTTCCACAGCACCCGCTGCAGGGCCTCCTTCAACTGCGAC
CACGAAACCGATCCCAAGCTCGCCAGCCTTCGAGAGTGGCAGGCTGTGGA
TGTTCATGCCCGGGATCTCTCTTTGGAGAGTGCTGGTGCAGCTGGTTGGT
ATGTCGCTGCTGGTGAGCTACTGCGTAACCCTCACCCTGCGGGCCTTCCA
CAGCACCCGCTGCAGGGCCTCCTTCAACTGCGACCACGAAACCGATCCCA
AGCTCGCCAGCCTTCGAGAGTGGCAGACCCTCGCCGACAACATGCTGAGC
GCCTTGTCCTTCCTAGACATGCTGCTTCAGTTCCGCACCGGCTACGTCGA
CAAGAACTCCAAGATCATCATCGACCCTAAGAAGGTGACAAAAGGTTGAA
CCCTCGCCGACAACATGCTGAGCGCCTTGTCCTTCCTAGACATGCTGCTT
CAGTTCCGCACCGGCTACGTCGACAAGAACTCCAAGATCATCATCGACCC
TAAGAAGGTGACAAAAGGTTGA
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