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Homology
BLAST of mRNA_E-fasciculatus_F_contig14779.3415.1 vs. uniprot
Match: D7FSM1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSM1_ECTSI) HSP 1 Score: 482 bits (1240), Expect = 4.350e-162 Identity = 306/340 (90.00%), Postives = 314/340 (92.35%), Query Frame = 1
Query: 1 QVCRLATGKSTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXX---TFPVANGAGFWLAVVTAPRAFVSRQRQRLRRLKRRIAAAGGAENGYRTTPLGAGGXXXXXXXXXXXXXXXXSR----SRRYGSRAGGSGESMATPKGGEKRLRGRGDPSPWRLASGGDTAAVSPVEGEASPAAAXXXAARGGVVGHVWVALKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLVQLVGMSLLVSYCVTLTLRAFHSTRCRASFNCDHETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV 999
+VCRLATGK+TRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXX PVANGAGFWLAVVTAPRAF++RQRQRLRRLKRRIAAAGGAENGYRTTPLGA XXXXXXXXXXXXXXXX SRR+GSRAGG GESMATP GG K LRGRGD WRLASGGDTAAVSPVEGEA PAAA AARGGVVGHVWV+LKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVL+QL GMSLLVSYCVTLTLRAFHSTRCRA+FNCD ETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV
Sbjct: 40 EVCRLATGKTTRLPLLSPSALWQYERSKSAXXXXXXXXXXXXXXXXXXXXXXXXVLPVANGAGFWLAVVTAPRAFLARQRQRLRRLKRRIAAAGGAENGYRTTPLGAXXXXXXXXXXXXXXXXXXXXXXXXSRRHGSRAGGPGESMATPTGGGKHLRGRGDL--WRLASGGDTAAVSPVEGEAGPAAAAA-AARGGVVGHVWVSLKLRDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLLQLAGMSLLVSYCVTLTLRAFHSTRCRAAFNCDPETDPKLASLREWQTLADNMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKV 376
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 485.7 |
| Seed ortholog evalue | 1.7e-134 |
| Seed eggNOG ortholog | 2880.D7FSM1 |
| EggNOG free text desc. | voltage-gated potassium channel activity |
| EggNOG OGs | KOG0498@1,KOG0498@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | C2 domain |
| Ec32 ortholog | Ec-04_000540.1 |
| Exons | 3 |
| Model size | 1011 |
| Cds size | 1011 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14779.3415.1 >prot_E-fasciculatus_F_contig14779.3415.1 ID=prot_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=337bp
QVCRLATGKSTRLPLLSPSALWQYERSKSAAAAAIAAAAYPALAAASSSS
STFPVANGAGFWLAVVTAPRAFVSRQRQRLRRLKRRIAAAGGAENGYRTT
PLGAGGARVWWILPPPPPPPAASRSRRYGSRAGGSGESMATPKGGEKRLR
GRGDPSPWRLASGGDTAAVSPVEGEASPAAAAAAAARGGVVGHVWVALKL
RDPSMLMMRVVRQWNMARDEASVQQRRAAQLEAKRLWMFMPGISLWRVLV
QLVGMSLLVSYCVTLTLRAFHSTRCRASFNCDHETDPKLASLREWQTLAD
NMLSALSFLDMLLQFRTGYVDKNSKIIIDPKKVTKG* back to topmRNA from alignment at E-fasciculatus_F_contig14779:252..2720- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14779.3415.1 ID=mRNA_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2469bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14779:252..2720- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCCTGTC
CCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCCGCCG
CCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTCCTCT
TCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCGTGAC
GGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGGCTCA
AGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCACCACC
CCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCACCGCC
GCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCTGGGG
GCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCTCCGG
GGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACACGGC
TGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCTGCTG
CCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAAGCTG
CGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACATGGC
CAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAGGCCA
AGAGGTGGGGTTGGAGTGCTGTAGCGGTTACGGCGGTGGTTGGAGGCCTT
CGTCATTGGTTGTGATATGCTGCTGCTGTTACTGTTGTTCTTGTTCTTGT
TCTTGTTGCTGTTGCTGCTGTTGTTCCTATTGTTGCTGTTGCTGCCGCTG
CTGTTGGACGTTGTTGCTGTGGTCGCTGTTTTGTGTTGGTTGTCGGTGTG
GTTGTGGTTATCGTTGTTGGCTGGCAGCGTAAGTGTTGTTTCATCCTTGT
GCATTGCTCGTGCCTGGCCTGGGCCCTTGGGTTACCCTGACTTTCTCCGT
TGTGGTGAACAGCGGTCTACGGCGAAAAAGGACACAAGCCAACACCAGAG
ACAGACCTGAAACACCCAACAACTTCGAAGAAATCAGTGGTATAAACAAG
AACAGGAGTAACCCTAACCCTAGCCCTAGCCCTACATCGCTGTCCCTCTC
TGGATGTAGAAGAAACGGCTGCAAGCTGCACGCGAACAGTAGTGTTTGTA
TTGTTTTTGGTCGCCAGCAGTTGATTTATTTACTTTACCGACCGATTTTC
TGTTTGATGCACGCGATCTACATCGCTGCCCCGCTCCGGACGCAATAGAT
GTTTTTTCTTGTCCGTTTACCAACCGATATCCTGTTTGATGCACGCGACA
CGAATGATGGGCCCCACCGAGGCAGGCTGTGGATGTTCATGCCCGGGATC
TCTCTTTGGAGAGTGCTGGTGCAGCTGGTTGGTATGTCGCTGCTGGTGAG
CTACTGCGTAACCCTCACCCTGCGGGCCTTCCACAGCACCCGCTGCAGGG
CCTCCTTCAACTGCGACCACGAAACCGATCCCAAGCTCGCCAGCCTTCGA
GAGTGGCAGGTGAAAAACAAAGAAAACGGTAGATATGAAAGCACAGCCAA
ACGCTTGAATCGTCCTGAACGGGTAGTCTCTCTGTGATTGTATGAATGAT
TGTCTGACAAATCTTGTCGGAGTGTATGGGATTGCATGAAATGAGTGCGG
TCTTTCCCACCATTTTCCGCTGGGGAAGACATCCGTTGTATTGTGGCCAG
CCTCCGAGAGTGGCAGGTGATATAACAACTGAATATTAATTTTTTTCGGG
GATCAATATCAAATGTGTGTGTGCTTTGTTTTGTTTTGTTGTAATTATTT
AATTTTTGGTTTTGGGGACGCAATATATAAAAACATTTGTATGAAATTAC
GGCGAAATAATAAGATGCTGTGTTGATGTTTTTGCTGGATGTTCTAGCTG
TTGTTGCTGTAAATTCTAGCTGTCGTCGTCGTCGTCGTCGTTATCGCCGT
TGTTGTTGTTACTGCTGCCGTTGTCGTTGTTACTGCTGCCGTTGATATAA
GCTTCGACTCAAATATGAAATTTCAGGATCGTTGTTGTTACTGCTGCCGT
TGTTGTTGTTACTGCTGCCGTTGTTGTTGTTACTGCTGCCGTTGCTGTTG
TTACTGCTGCCGTTGCTGTTGTTACTGCTGCCGTTGTCACCGTTGCCGTT
TGCGTTTGTTCTTGCCGTTGTTCTTGCTGCCGCTCTCCCCTTACCCTTCC
GCGACGTCGGGGGCATTAACAACCCCCACCCCCACTCCTTTCGGTCGCGT
CTAACGCATGTCGTCGTGTGATAATTCTTCACTTGGTGCCGCGAAGACCC
TCGCCGACAACATGCTGAGCGCCTTGTCCTTCCTAGACATGCTGCTTCAG
TTCCGCACCGGCTACGTCGACAAGAACTCCAAGATCATCATCGACCCTAA
GAAGGTGACAAAAGGTTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14779:252..2720- >mRNA_E-fasciculatus_F_contig14779.3415.1 ID=mRNA_E-fasciculatus_F_contig14779.3415.1|Name=mRNA_E-fasciculatus_F_contig14779.3415.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2022bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14779:252..2720- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCCTGTC
CCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCCGCCG
CCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTCCTCT
TCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCGTGAC
GGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGGCTCA
AGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCACCACC
CCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCACCGCC
GCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCTGGGG
GCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCTCCGG
GGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACACGGC
TGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCTGCTG
CCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAAGCTG
CGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACATGGC
CAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAGGCCA
AGAGCAGGTGTGCCGACTGGCGACGGGAAAGTCAACGAGGCTCCCGCTCC
TGTCCCCCTCCGCCCTCTGGCAGTACGAGAGAAGCAAGAGCGCGGCCGCC
GCCGCCATCGCCGCAGCCGCCTACCCCGCCCTAGCAGCAGCATCCTCCTC
CTCTTCCACTTTCCCGGTCGCAAACGGCGCCGGCTTCTGGCTCGCCGTCG
TGACGGCCCCGCGAGCCTTCGTTTCGCGGCAGCGGCAGCGGCTGCGCCGG
CTCAAGCGCAGGATTGCGGCCGCCGGCGGCGCGGAAAACGGTTACCGCAC
CACCCCGCTCGGCGCCGGAGGCGCCAGGGTCTGGTGGATACTACCGCCAC
CGCCGCCGCCTCCCGCGGCATCGAGATCCAGGCGCTACGGGTCTAGGGCT
GGGGGCTCCGGCGAATCGATGGCTACCCCGAAGGGGGGGGAGAAGCGCCT
CCGGGGGAGGGGGGACCCTTCTCCGTGGAGGCTTGCTTCGGGCGGGGACA
CGGCTGCCGTGTCCCCTGTGGAGGGGGAGGCGAGCCCCGCTGCTGCTGCT
GCTGCCGCCGCCCGCGGCGGCGTGGTGGGCCACGTGTGGGTGGCTCTGAA
GCTGCGGGACCCCTCTATGCTCATGATGAGGGTGGTGCGGCAGTGGAACA
TGGCCAGGGACGAGGCGTCCGTGCAGCAGCGACGAGCGGCCCAGCTGGAG
GCCAAGAGGCTGTGGATGTTCATGCCCGGGATCTCTCTTTGGAGAGTGCT
GGTGCAGCTGGTTGGTATGTCGCTGCTGGTGAGCTACTGCGTAACCCTCA
CCCTGCGGGCCTTCCACAGCACCCGCTGCAGGGCCTCCTTCAACTGCGAC
CACGAAACCGATCCCAAGCTCGCCAGCCTTCGAGAGTGGCAGGCTGTGGA
TGTTCATGCCCGGGATCTCTCTTTGGAGAGTGCTGGTGCAGCTGGTTGGT
ATGTCGCTGCTGGTGAGCTACTGCGTAACCCTCACCCTGCGGGCCTTCCA
CAGCACCCGCTGCAGGGCCTCCTTCAACTGCGACCACGAAACCGATCCCA
AGCTCGCCAGCCTTCGAGAGTGGCAGACCCTCGCCGACAACATGCTGAGC
GCCTTGTCCTTCCTAGACATGCTGCTTCAGTTCCGCACCGGCTACGTCGA
CAAGAACTCCAAGATCATCATCGACCCTAAGAAGGTGACAAAAGGTTGAA
CCCTCGCCGACAACATGCTGAGCGCCTTGTCCTTCCTAGACATGCTGCTT
CAGTTCCGCACCGGCTACGTCGACAAGAACTCCAAGATCATCATCGACCC
TAAGAAGGTGACAAAAGGTTGA back to top
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