mRNA_E-fasciculatus_F_contig14777.3414.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14777.3414.1
Unique NamemRNA_E-fasciculatus_F_contig14777.3414.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14777.3414.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.350e-41
Identity = 89/127 (70.08%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:    1 GFSLASLDEQLSQLESISQWLSALDSSQSLARSGEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXDTRRKLELVIAQCRTSLASAAKSLGGRSGGAEEGSHVLRLSNDGIVTSDVGCGRLERARREEA 381
            GFSLASLDEQLSQLES   WLSA DSS SLARSGEA                            DTR+KLELVIAQCRTSL+S AKSLGGRSGG EEGSHVLRLSNDGIVT DVGCGRLERARREEA
Sbjct:  537 GFSLASLDEQLSQLESFLGWLSAQDSSHSLARSGEATAAGAGKTSEVSEGPTKKNNRAEERRRRDTRKKLELVIAQCRTSLSSTAKSLGGRSGGTEEGSHVLRLSNDGIVTPDVGCGRLERARREEA 663
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14777.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPN2_ECTSI4.350e-4170.08CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14777contigE-fasciculatus_F_contig14777:96..1581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue4.1e-36
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-16_001340.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.8389072-CDS-E-fasciculatus_F_contig14777:95..2421622927960.8389072-CDS-E-fasciculatus_F_contig14777:95..242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 96..242 -
1695995768.2040696-CDS-E-fasciculatus_F_contig14777:95..2421695995768.2040696-CDS-E-fasciculatus_F_contig14777:95..242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 96..242 -
1622927960.8598223-CDS-E-fasciculatus_F_contig14777:694..7931622927960.8598223-CDS-E-fasciculatus_F_contig14777:694..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 695..793 -
1695995768.2238636-CDS-E-fasciculatus_F_contig14777:694..7931695995768.2238636-CDS-E-fasciculatus_F_contig14777:694..793Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 695..793 -
1622927960.880884-CDS-E-fasciculatus_F_contig14777:1098..11911622927960.880884-CDS-E-fasciculatus_F_contig14777:1098..1191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 1099..1191 -
1695995768.2341015-CDS-E-fasciculatus_F_contig14777:1098..11911695995768.2341015-CDS-E-fasciculatus_F_contig14777:1098..1191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 1099..1191 -
1622927960.8957145-CDS-E-fasciculatus_F_contig14777:1536..15811622927960.8957145-CDS-E-fasciculatus_F_contig14777:1536..1581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 1537..1581 -
1695995768.2427995-CDS-E-fasciculatus_F_contig14777:1536..15811695995768.2427995-CDS-E-fasciculatus_F_contig14777:1536..1581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14777 1537..1581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14777.3414.1prot_E-fasciculatus_F_contig14777.3414.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14777 96..1581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14777.3414.1

>prot_E-fasciculatus_F_contig14777.3414.1 ID=prot_E-fasciculatus_F_contig14777.3414.1|Name=mRNA_E-fasciculatus_F_contig14777.3414.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=128bp
GFSLASLDEQLSQLESISQWLSALDSSQSLARSGEAAAAGGGTTSEVSEG
RKKRHNRAEERRRRDTRRKLELVIAQCRTSLASAAKSLGGRSGGAEEGSH
VLRLSNDGIVTSDVGCGRLERARREEAG
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mRNA from alignment at E-fasciculatus_F_contig14777:96..1581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14777.3414.1 ID=mRNA_E-fasciculatus_F_contig14777.3414.1|Name=mRNA_E-fasciculatus_F_contig14777.3414.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14777:96..1581- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTTCAGTTTGGCTTCCCTCGACGAGCAGCTTAGCCAACTCGAGGTCGG
GCAGTACCTTTTGTTTGCGTGCTCCTCCGCTTATGGTTCTCGCCCCGTGC
GTCAGAAACATAGCCCGCCTCAATGCCCCCGGAGTGTGTAGATTCAGCCG
AGACACGCATGGTCTTCTTGACAACAAAATCCGCAGTGTATCCTACACAT
GAGGTACAGCAATGACATCGCTGTCTTTCCCCGCGTTAGGGTCGACTCTT
ACGTTGCGGATCTACCTCGTCTGATTTGAATTCCTGCAAGAGTAAGATTG
CTGGTTCCCAAAGTTCCTTTAACCCACGCCCAGGTATTATTTCTGACTGC
ACACCTCGTGTCGTTGACTGCGTGCCGTCCCTCTGCGCAGAGTATTTCGC
AGTGGCTCTCTGCGCTGGATTCTTCGCAAAGTCTTGCAAGGTCTGGGGAG
GCGGCCGCAGCCGGCGGGGGCACCACATCCGAGGTGTCGTGTCGTGTTGT
TTAGCCTGGTCGTGTCGTGAGACGCGGCAAGATGAGACGGTATCCCCGAC
ACGATTGGTATGATGGGTGCACCGAAGCATGAGACACCTATTCACCTGGC
CAGGGGTGGTTCCAGCTAGTGAATGATCGGCGCTAGAGTATATTTCCGTT
GTTGGATATAAGTGGTGAAGCTCTTGTAGAGTCATTAATCTGAGCGTGAA
ACCTAGTTGCTAATCTACCAGATGTGGAAATGACCGGACAAAGTTGTTTC
TGACTCGTAACAATGGTGCGCCCGCCACATATCGCCAGGTGTCCGAGGGG
CGAAAGAAGAGGCACAATCGCGCCGAAGAGCGCCGAAGACGCGACACACG
AAGAAAACTAGAGCTGGTCATTGCGCAGTGCCGAACGGTAAGCGCCCGGC
CTCGGGCGGGCGCCGCCTGGGAATAGGAACTACATAGGGGCGTGGGTAGC
GCTGTGTACTTGCTGTTCTTCTCAAAATAACCAACACAAGTACTCTTGAG
TGCTGTGAGAAGGTGTACAAGAAAACACAACCCGACTCGAGCCGTGGGTT
TCGCATGATTATTGTATGCCCCCTGTGTTTGAGGCGAAAACGATATTGTT
TTAGGCAGCCTCCGTTCACCCATAAGGCTGAGTGCTCGCGCCCTCATCGA
AGGAAAAGACGTTCGTCCGTACCGTACGCAAGTAAATATAAATTTGCTTA
GGCTGACCAACGTCCACCATAAGCTGCGGTAAGATACGATTGTTTCTGAA
AACAGCTGTTCGCACTAAATAACGTTTTTCTCTGCCAACGGCTCTATGTG
CGCACCCTTGATAATTTGGTCTTGTCGATCGGACACCAGTCTCTTGCTTC
GGCTGCCAAATCTCTTGGCGGGCGAAGCGGTGGGGCAGAGGAGGGCTCCC
ATGTGCTGCGGCTGAGCAATGACGGCATCGTCACGTCGGACGTAGGGTGT
GGGCGCTTGGAGAGGGCAAGGAGGGAGGAGGCGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14777:96..1581-

>mRNA_E-fasciculatus_F_contig14777.3414.1 ID=mRNA_E-fasciculatus_F_contig14777.3414.1|Name=mRNA_E-fasciculatus_F_contig14777.3414.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14777:96..1581- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTTCAGTTTGGCTTCCCTCGACGAGCAGCTTAGCCAACTCGAGGGCTT
CAGTTTGGCTTCCCTCGACGAGCAGCTTAGCCAACTCGAGAGTATTTCGC
AGTGGCTCTCTGCGCTGGATTCTTCGCAAAGTCTTGCAAGGTCTGGGGAG
GCGGCCGCAGCCGGCGGGGGCACCACATCCGAGAGTATTTCGCAGTGGCT
CTCTGCGCTGGATTCTTCGCAAAGTCTTGCAAGGTCTGGGGAGGCGGCCG
CAGCCGGCGGGGGCACCACATCCGAGGTGTCCGAGGGGCGAAAGAAGAGG
CACAATCGCGCCGAAGAGCGCCGAAGACGCGACACACGAAGAAAACTAGA
GCTGGTCATTGCGCAGTGCCGAACGGTGTCCGAGGGGCGAAAGAAGAGGC
ACAATCGCGCCGAAGAGCGCCGAAGACGCGACACACGAAGAAAACTAGAG
CTGGTCATTGCGCAGTGCCGAACGTCTCTTGCTTCGGCTGCCAAATCTCT
TGGCGGGCGAAGCGGTGGGGCAGAGGAGGGCTCCCATGTGCTGCGGCTGA
GCAATGACGGCATCGTCACGTCGGACGTAGGGTGTGGGCGCTTGGAGAGG
GCAAGGAGGGAGGAGGCGGGGTCTCTTGCTTCGGCTGCCAAATCTCTTGG
CGGGCGAAGCGGTGGGGCAGAGGAGGGCTCCCATGTGCTGCGGCTGAGCA
ATGACGGCATCGTCACGTCGGACGTAGGGTGTGGGCGCTTGGAGAGGGCA
AGGAGGGAGGAGGCGGGG
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