mRNA_E-fasciculatus_F_contig14776.3413.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14776.3413.1
Unique NamemRNA_E-fasciculatus_F_contig14776.3413.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14776.3413.1 vs. uniprot
Match: A0A6H5KJ83_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ83_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.530e-16
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 LRRSCISRWASPVVCVVKKNWSVQVTANLKRPNSATSVVPCSARPHIAECVDQLG 165
            LRRS  S WASPVVCV+KKN SV+VTANLKR NSAT VVPCS  PHIAEC+DQLG
Sbjct:  156 LRRSN-SEWASPVVCVMKKNGSVRVTANLKRLNSAT-VVPCSVLPHIAECIDQLG 208
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14776.3413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ83_9PHAE3.530e-1680.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14776contigE-fasciculatus_F_contig14776:782..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.7928534-CDS-E-fasciculatus_F_contig14776:781..11111622927960.7928534-CDS-E-fasciculatus_F_contig14776:781..1111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14776 782..1111 +
1695995768.1908145-CDS-E-fasciculatus_F_contig14776:781..11111695995768.1908145-CDS-E-fasciculatus_F_contig14776:781..1111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14776 782..1111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14776.3413.1prot_E-fasciculatus_F_contig14776.3413.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14776 782..1111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14776.3413.1

>prot_E-fasciculatus_F_contig14776.3413.1 ID=prot_E-fasciculatus_F_contig14776.3413.1|Name=mRNA_E-fasciculatus_F_contig14776.3413.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
LRRSCISRWASPVVCVVKKNWSVQVTANLKRPNSATSVVPCSARPHIAEC
VDQLGAAPSSRCSTWSEASTKPGSTRSPSIVTSTALCDFIRVPMGASGAP
NYSVAIVSG*
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mRNA from alignment at E-fasciculatus_F_contig14776:782..1111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14776.3413.1 ID=mRNA_E-fasciculatus_F_contig14776.3413.1|Name=mRNA_E-fasciculatus_F_contig14776.3413.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14776:782..1111+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCGGCGATCTTGTATTAGCAGATGGGCGTCCCCGGTGGTGTGTGTGGT
GAAAAAGAACTGGTCGGTGCAAGTGACGGCCAATTTGAAACGACCGAATA
GTGCAACATCAGTAGTCCCCTGTAGTGCTCGTCCCCACATTGCAGAATGC
GTCGACCAGCTCGGGGCAGCTCCGTCTTCTCGATGCTCTACTTGGTCAGA
AGCTTCTACCAAGCCCGGATCCACGAGGAGTCCATCCATCGTGACGAGTA
CCGCTCTGTGCGACTTCATCCGTGTACCCATGGGGGCGAGTGGTGCTCCC
AACTACTCTGTTGCAATTGTATCTGGATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14776:782..1111+

>mRNA_E-fasciculatus_F_contig14776.3413.1 ID=mRNA_E-fasciculatus_F_contig14776.3413.1|Name=mRNA_E-fasciculatus_F_contig14776.3413.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14776:782..1111+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCGGCGATCTTGTATTAGCAGATGGGCGTCCCCGGTGGTGTGTGTGGT
GAAAAAGAACTGGTCGGTGCAAGTGACGGCCAATTTGAAACGACCGAATA
GTGCAACATCAGTAGTCCCCTGTAGTGCTCGTCCCCACATTGCAGAATGC
GTCGACCAGCTCGGGGCAGCTCCGTCTTCTCGATGCTCTACTTGGTCAGA
AGCTTCTACCAAGCCCGGATCCACGAGGAGTCCATCCATCGTGACGAGTA
CCGCTCTGTGCGACTTCATCCGTGTACCCATGGGGGCGAGTGGTGCTCCC
AACTACTCTGTTGCAATTGTATCTGGATGATTGCGGCGATCTTGTATTAG
CAGATGGGCGTCCCCGGTGGTGTGTGTGGTGAAAAAGAACTGGTCGGTGC
AAGTGACGGCCAATTTGAAACGACCGAATAGTGCAACATCAGTAGTCCCC
TGTAGTGCTCGTCCCCACATTGCAGAATGCGTCGACCAGCTCGGGGCAGC
TCCGTCTTCTCGATGCTCTACTTGGTCAGAAGCTTCTACCAAGCCCGGAT
CCACGAGGAGTCCATCCATCGTGACGAGTACCGCTCTGTGCGACTTCATC
CGTGTACCCATGGGGGCGAGTGGTGCTCCCAACTACTCTGTTGCAATTGT
ATCTGGATGA
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