mRNA_E-fasciculatus_F_contig14775.3411.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14775.3411.1
Unique NamemRNA_E-fasciculatus_F_contig14775.3411.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.350e-62
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1
Query:   19 GWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 327
            GWLAVSPLLGAYTRSATET GGAAKALLPAWG+SIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW
Sbjct:  260 GWLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: A0A835ZDH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.600e-29
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   19 GWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGD-KQAGLLDGFRMITTLLQRW 327
            GWL +SPLLGAYT  AT T       L+PAW VSIPV + +R   KG +VPPVPF + S+I T + L AWR LY  +NPT   + K+ G+LDGFRMITTLL+RW
Sbjct:  170 GWLGLSPLLGAYTNQATATQKDMISTLVPAWAVSIPVALAIRGAVKG-DVPPVPFIIVSLIATGSLLAAWRGLYVVINPTSTAETKRGGILDGFRMITTLLRRW 272          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: A0A7S2UZN6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.940e-28
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   19 GWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQ---AGLLDGFRMITTLLQRW 327
            GWL ++PL GAYTR A    G +AK++  AW  SIP GIF RAL+KGGE+PP  F   SM  TL  L+ WR ++  VN  G  DK+    G++DGFRMITTL++RW
Sbjct:  178 GWLLLAPLAGAYTRQAVTDQGSSAKSVAVAWVASIPAGIFARALTKGGEIPPTSFIAVSMTATLVLLLTWRAIFVKVN--GSPDKEFRDGGIIDGFRMITTLIKRW 281          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: A0A1X6P744_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P744_PORUM)

HSP 1 Score: 85.1 bits (209), Expect = 4.210e-17
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   22 WLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVN--PTGEGDKQAGLLDGFRMITTLLQRW 327
            WLAV+PL+GAYTR A  T  GAA     AW V +P G+ LR +     +PP  FAV +++ T   L  WR  Y  +      EG K+ G+LDGFRMITTLL+RW
Sbjct:  337 WLAVAPLMGAYTRRAVGTYQGAAVTTARAWLVGVPSGLALRGVVTS-HLPPPSFAVVTLLSTAVLLGVWRGSYVKLRGAEVAEG-KRGGVLDGFRMITTLLRRW 438          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: A0A2V3IEJ3_9FLOR (Adenylate kinase, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEJ3_9FLOR)

HSP 1 Score: 85.1 bits (209), Expect = 4.590e-17
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 1
Query:   22 WLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVN-PTGEGDKQAGLLDGFRMITTLLQRW 327
            WL  SPLLGAYTR+AT       K  + AW V++P+GI LR +     VPPV FAV S++ TL  + +WR LY  +     +  ++ G+++ F+M+TTLL+RW
Sbjct:  368 WLISSPLLGAYTRAATANIPATLKYFVRAWAVAVPMGIGLRGVVTD-HVPPVVFAVISLVATLLLMGSWRTLYVLIRGDETDSARRGGVVETFKMVTTLLRRW 469          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: A0A5J4YRR5_PORPP (Adenylate kinase 8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRR5_PORPP)

HSP 1 Score: 77.0 bits (188), Expect = 3.640e-14
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   19 GWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEG--DKQAGLLDGFRMITTLLQR 324
            GW+  SP+LGAYT +AT +       +  +  V++P+G+ +R L     VPP  FA  +MI  L  L AWR  Y +V  T +   +K+ GLLDGF+MITTLL+R
Sbjct:  642 GWVLGSPVLGAYTAAATSSQSAVLACVARSALVALPLGLAIRGLETS-HVPPPSFAGIAMITNLILLSAWRSAYISVAGTSDPGPEKRGGLLDGFKMITTLLRR 744          
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Match: V4X812_9ARCH (Uncharacterized protein n=1 Tax=uncultured archaeon A07HR67 TaxID=1412871 RepID=V4X812_9ARCH)

HSP 1 Score: 49.3 bits (116), Expect = 4.800e-5
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 1
Query:   19 GWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRA-LSKGGEVPPVPFAVTSMIFTLAALMAWRQLY 240
            GW   SPL+GAY+  A ETA  +   ++ +W  +  VG+ LRA + +GG  P   F V  ++    AL  WR LY
Sbjct:   60 GWAVFSPLVGAYSAGAVETAKSSVPLVVRSWVPAAAVGLLLRAFVFRGGAAPA--FVVVILVSGTVALGGWRALY 132          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14775.3411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK66_ECTSI1.350e-6298.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH1_9STRA1.600e-2956.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZN6_9STRA5.940e-2852.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1X6P744_PORUM4.210e-1748.08Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2V3IEJ3_9FLOR4.590e-1743.69Adenylate kinase, chloroplastic n=1 Tax=Gracilario... [more]
A0A5J4YRR5_PORPP3.640e-1443.27Adenylate kinase 8 n=1 Tax=Porphyridium purpureum ... [more]
V4X812_9ARCH4.800e-538.67Uncharacterized protein n=1 Tax=uncultured archaeo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14775contigE-fasciculatus_F_contig14775:19..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.1
Seed ortholog evalue8.6e-51
Seed eggNOG ortholog2880.D8LK66
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF3054
Ec32 orthologEc-08_002930.1
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.6470087-CDS-E-fasciculatus_F_contig14775:18..3481622927960.6470087-CDS-E-fasciculatus_F_contig14775:18..348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 19..348 +
1695995768.1308093-CDS-E-fasciculatus_F_contig14775:18..3481695995768.1308093-CDS-E-fasciculatus_F_contig14775:18..348Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14775 19..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14775.3411.1prot_E-fasciculatus_F_contig14775.3411.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14775 19..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14775.3411.1

>prot_E-fasciculatus_F_contig14775.3411.1 ID=prot_E-fasciculatus_F_contig14775.3411.1|Name=mRNA_E-fasciculatus_F_contig14775.3411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MACTTTGWLAVSPLLGAYTRSATETAGGAAKALLPAWGVSIPVGIFLRAL
SKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFR
MITTLLQRW*
back to top

mRNA from alignment at E-fasciculatus_F_contig14775:19..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14775.3411.1 ID=mRNA_E-fasciculatus_F_contig14775.3411.1|Name=mRNA_E-fasciculatus_F_contig14775.3411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14775:19..348+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATGTACCACCACAGGTTGGTTGGCGGTTTCTCCCCTCCTAGGGGC ATACACGAGGTCGGCGACGGAGACGGCGGGAGGCGCGGCGAAGGCGCTCC TGCCGGCGTGGGGGGTTTCCATCCCGGTGGGCATATTCCTGCGGGCCCTG TCGAAGGGGGGAGAGGTTCCCCCGGTCCCCTTCGCGGTGACGTCGATGAT CTTCACGCTGGCGGCGCTGATGGCCTGGCGGCAGCTGTACACAGCGGTGA ACCCTACGGGGGAGGGGGACAAGCAGGCCGGGCTGCTGGACGGGTTTCGG ATGATCACGACGCTGTTGCAGCGGTGGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14775:19..348+

>mRNA_E-fasciculatus_F_contig14775.3411.1 ID=mRNA_E-fasciculatus_F_contig14775.3411.1|Name=mRNA_E-fasciculatus_F_contig14775.3411.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14775:19..348+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCATGTACCACCACAGGTTGGTTGGCGGTTTCTCCCCTCCTAGGGGC
ATACACGAGGTCGGCGACGGAGACGGCGGGAGGCGCGGCGAAGGCGCTCC
TGCCGGCGTGGGGGGTTTCCATCCCGGTGGGCATATTCCTGCGGGCCCTG
TCGAAGGGGGGAGAGGTTCCCCCGGTCCCCTTCGCGGTGACGTCGATGAT
CTTCACGCTGGCGGCGCTGATGGCCTGGCGGCAGCTGTACACAGCGGTGA
ACCCTACGGGGGAGGGGGACAAGCAGGCCGGGCTGCTGGACGGGTTTCGG
ATGATCACGACGCTGTTGCAGCGGTGGTGAATGGCATGTACCACCACAGG
TTGGTTGGCGGTTTCTCCCCTCCTAGGGGCATACACGAGGTCGGCGACGG
AGACGGCGGGAGGCGCGGCGAAGGCGCTCCTGCCGGCGTGGGGGGTTTCC
ATCCCGGTGGGCATATTCCTGCGGGCCCTGTCGAAGGGGGGAGAGGTTCC
CCCGGTCCCCTTCGCGGTGACGTCGATGATCTTCACGCTGGCGGCGCTGA
TGGCCTGGCGGCAGCTGTACACAGCGGTGAACCCTACGGGGGAGGGGGAC
AAGCAGGCCGGGCTGCTGGACGGGTTTCGGATGATCACGACGCTGTTGCA
GCGGTGGTGA
back to top