mRNA_E-fasciculatus_F_contig14773.3410.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14773.3410.1
Unique NamemRNA_E-fasciculatus_F_contig14773.3410.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14773.3410.1 vs. uniprot
Match: D7FRC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC5_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 4.650e-65
Identity = 485/698 (69.48%), Postives = 491/698 (70.34%), Query Frame = 1
Query:   58 MSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGQPVAGDASVPAAGSEDVVLEDKAAAXXXXXXEAGPEAEAXXXXXXXXXXAAGPLGFSTADPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGESSSPAADAADAAGRPELTVEVGDVVNGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSGNAAGRPTFERKSSSVMDLIREREKAAQSARLPPSARKETSAAHSPSLAAALTRGKAGARPWLGSSGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKVASLAPAEAXXXXXXXXXXX---------EKALSPSMAAARMRKTVDRSMWSSAPSSSGAGSSRPGLSATWAFNSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIRANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPASPAGFAAAKALFASTGGIPSSSKPSVPPPSKPRASTGXXXXXXXXXXXXXXXXXXXXXR-----ATTKPWEKK 2109
            MSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    P A  A VPAAGS+DVVLEDKAA        A  EAE            AGPLGFST DP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             AGRPELTVEVGDVVNG    XXXXXXXXXXXXXXXX                 RPSG+  GRPTFERKSSSVMDLIREREKAAQSARLPPSARKETSA HSPSLAAALTRGK GA+PW+G+S N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXX         EKALSPSMAAARMRKTVDRSMWSSAPSSSGAGS  PGLSATWAFNSAA  XXXXXXXXXXXXXX                                                                                                    PAGFAAAKALFASTGGIPS SK S+PPPSKPR ST XXXXXXXXXXXXXXXXXXXX R     ATTKPWEKK
Sbjct:    1 MSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PAADGAPVPAAGSDDVVLEDKAAVAEAAGGAAA-EAETATATVSAESATAGPLGFSTTDPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------AGRPELTVEVGDVVNG----XXXXXXXXXXXXXXXXLSAPSEESTIGDLGGGRRPSGSVGGRPTFERKSSSVMDLIREREKAAQSARLPPSARKETSATHSPSLAAALTRGKVGAKPWMGASDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEKALSPSMAAARMRKTVDRSMWSSAPSSSGAGSG-PGLSATWAFNSAAGKXXXXXXXXXXXXXXAEETEDGASGAPPAAVADCPP-------------------------------------------------------------------------------PAGFAAAKALFASTGGIPSGSKASLPPPSKPRTSTXXXXXXXXXXXXXXXXXXXXXPREPVHRATTKPWEKK 603          
BLAST of mRNA_E-fasciculatus_F_contig14773.3410.1 vs. uniprot
Match: A0A6H5L6G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G5_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 9.480e-46
Identity = 370/523 (70.75%), Postives = 380/523 (72.66%), Query Frame = 1
Query:   19 SGAPNCLSVVAGVMSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGQPVAGDASVPAAGSEDVVLEDKAAAXXXXXXEAGPEAEAXXXXXXXXXXAAGPLGFSTADPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGES--SSPAADAADAAGRPELTVEVGDVVNGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSGNAAGRPTFERKSSSVMDLIREREKAAQSARLPPSARKETSAAHSPSLAAALTRGKAGARPWLGSSGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------DKVASLAPAEAXXXXXXXXXXXEKALSPSMAAARMRKTVDRSMWSSAPSSSGAGSSRPGLSATWAFNSAA 1560
            SGAPNCLSVVAGV SVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYE XXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXXX                             XXXXX        XXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXX  ES  SSP A AA  AG PELTVEVG+VVNG    XXXXXXXXXXXXXXX                  +PSG+  GRPTFERK+SSVMDLIREREKAAQSARLPPSARKETS  HSP LAAALTRGK G +PWLG+S N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       +KVA LA AEA           + A+SPSMAAARMRKTVDRS+WSSAPSSSGAGS  PGLSATWA  SAA
Sbjct:  481 SGAPNCLSVVAGVTSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQEVAYEXXXXXXXXXXXXXXXXFARSKRNSPPRPRSQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLDGDNADVVXXXXXXXXXXXXXXXXXXXXXXXANESLPSSPTAAAA-CAGSPELTVEVGEVVNG----XXXXXXXXXXXXXXXALSAPSEVSITGDLGGGRQPSGSVGGRPTFERKTSSVMDLIREREKAAQSARLPPSARKETSVMHSPGLAAALTRGKVGTKPWLGASDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEKVAGLAAAEASAGAGG-----KMAMSPSMAAARMRKTVDRSLWSSAPSSSGAGSG-PGLSATWAVRSAA 985          
BLAST of mRNA_E-fasciculatus_F_contig14773.3410.1 vs. uniprot
Match: A0A835ZB29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB29_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.240e-11
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   13 DQSGAPNCLSVVAGVMSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQER-DQEVAYEE 195
            D++G  NCL VV+G+ ++ LQ L  +D L WA HLYQASAVANGGGYLL++ER  Q VA EE
Sbjct:  615 DEAGQLNCLRVVSGITTLTLQGLTHEDMLDWAKHLYQASAVANGGGYLLERERAKQRVADEE 676          
BLAST of mRNA_E-fasciculatus_F_contig14773.3410.1 vs. uniprot
Match: A0A7S2DGQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGQ6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.390e-5
Identity = 23/49 (46.94%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   34 CLSVVAGVMSVVLQALNRQDALSWASHLYQASAVANGGGYLLDQERDQE 180
            C  VV+GV ++V+QA   ++ + W++ LY A A+ANGGGYLLD +R+++
Sbjct:  132 CFKVVSGVATLVMQAETVEEMIEWSTLLYHAIAIANGGGYLLDMQREKK 180          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14773.3410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FRC5_ECTSI4.650e-6569.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6G5_9PHAE9.480e-4670.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZB29_9STRA5.240e-1161.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DGQ6_9STRA3.390e-546.94Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14773contigE-fasciculatus_F_contig14773:1..3209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue4.1e-65
Seed eggNOG ortholog2880.D7FRC5
KEGG koko:K15411,ko:K19951,ko:K20526
KEGG Pathwayko05168,map05168
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-26_002650.1
Exons3
Model size2424
Cds size2424
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14773.3410.1prot_E-fasciculatus_F_contig14773.3410.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14773 1..3209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927960.5702486-CDS-E-fasciculatus_F_contig14773:0..22151622927960.5702486-CDS-E-fasciculatus_F_contig14773:0..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 1..2215 -
1695995768.0917914-CDS-E-fasciculatus_F_contig14773:0..22151695995768.0917914-CDS-E-fasciculatus_F_contig14773:0..2215Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 1..2215 -
1622927960.5862317-CDS-E-fasciculatus_F_contig14773:2592..26781622927960.5862317-CDS-E-fasciculatus_F_contig14773:2592..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 2593..2678 -
1695995768.103609-CDS-E-fasciculatus_F_contig14773:2592..26781695995768.103609-CDS-E-fasciculatus_F_contig14773:2592..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 2593..2678 -
1622927960.601435-CDS-E-fasciculatus_F_contig14773:3086..32091622927960.601435-CDS-E-fasciculatus_F_contig14773:3086..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 3087..3209 -
1695995768.1143062-CDS-E-fasciculatus_F_contig14773:3086..32091695995768.1143062-CDS-E-fasciculatus_F_contig14773:3086..3209Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14773 3087..3209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14773.3410.1

>prot_E-fasciculatus_F_contig14773.3410.1 ID=prot_E-fasciculatus_F_contig14773.3410.1|Name=mRNA_E-fasciculatus_F_contig14773.3410.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=808bp
MCVTDQSGAPNCLSVVAGVMSVVLQALNRQDALSWASHLYQASAVANGGG
YLLDQERDQEVAYEEERRRRLAQEASERERFARSKRNSPQRPRSQAEEEQ
KEEEAGQPQQLQQQEGEDGQPVAGDASVPAAGSEDVVLEDKAAAAAAAGG
EAGPEAEAATATVSAESAAAGPLGFSTADPAAAAAAAAAAAAVAVAAPVD
DDAPAAARDSEQRSLDDDADEGVVVVPEDAGAGAGDDDSGGDASKKEDAD
ADANGESSSPAADAADAAGRPELTVEVGDVVNGGTSAAAAAASGGTAAAL
SAPSEEESAIGDLGGGGGGRRPSGNAAGRPTFERKSSSVMDLIREREKAA
QSARLPPSARKETSAAHSPSLAAALTRGKAGARPWLGSSGNNTPAAATST
PRGGSSMFFSSTPKGSTAAAARSGFSATAPAVASTGGDDATAGKEEEEEE
DKVASLAPAEASAGAGGGAGAGEKALSPSMAAARMRKTVDRSMWSSAPSS
SGAGSSRPGLSATWAFNSAAAGKQQKSSEEAAQKGGPAAETEDEGSAAAT
TTTATASTPAAVVDCPPPAGFAAAKAMFASTGGIRANSRPAAASAVAAAD
VLAAAAAERESSATAAAAGAGAGSSSVQQEVVVPASPAGFAAAKALFAST
GGIPSSSKPSVPPPSKPRASTGTAAAAYARAAATSNSTSVPAPRATTKPW
EKKTPAAGGGGASGASWGSAASASASASASASASASAAAAATTDSSSDED
GEPSSSAGGGRSLSPVTTPGAGGAAAKGSTSRHHQKSSEPRVSPAPAPAP
AAQLSSSS
back to top

mRNA from alignment at E-fasciculatus_F_contig14773:1..3209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14773.3410.1 ID=mRNA_E-fasciculatus_F_contig14773.3410.1|Name=mRNA_E-fasciculatus_F_contig14773.3410.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3209bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14773:1..3209- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGTGTGACGGATCAGAGCGGTGCCCCTAACTGCCTGTCGGTCGTGGC GGGAGTCATGTCCGTCGTGCTGCAGGCGTTGAATCGCCAGGACGCCTTGT CGTGGGCGAGCCATCTCTACCAGGTGAACACGGGAATAACAGTACCGTTG TCTGCCCATATTTATGTGGTAGTTTAACCGTTTTTGCGCCGGGGCGCATC CATCAGTCCGTGTTGAAATGTTGAGTAGTACGTGTACTTTTTTACTGATG TTGAGTCGGATGGGTCGTGCCTCGGTGGGTACAGTATGGTTTGTATGTAT TGGAGGACCCTCCCCCAATCATCTGATAAGTTGCACTATCCGTCGTCAAA TATACGGACCATTGTGGTATTTGCGCTTGTATCCGAATGGCCGTTACAAT TGCGAACAGCAGTGTGGTATCATTCAAGGCTATTACTCCGTGACGGCTAT TACTCCGTGACGGATCAACCCCCTCTGATTGATACCTTGTTGTATCTAAA CTCGATTTGACGCCTCCGATGATCGGTACAGGCAAGTGCGGTGGCCAACG GCGGAGGCTACCTGTTGGACCAGGAGAGGGACCAGGAGGTCGCCTACGAG GAGGAGAGACGCCGCAGGTGCCTTGTCTTGTCTTGTGTTCGCGCACCGTA CGTACGTCGTGTGCTGAAGGCTTGTGTTTGCTTTGCCACCTATTGTTGAG CTCTCTCTTCTCCCCCTGTGTTGAACTCGGTGTTGTCGCTTGTGTCGTTG CGCTTGCTGTGATGCTTGCGTATCCCCCTCTCGGCCTCTGCGTTTGCCCC CCTTTTAGTTGCGACTGACCGCCGTGTGTTCTTTTGTTCTTTTCTGTGCC TTAATACCTGTGCTTCGACTAACTCAAGACTTGCCACTTCTTGTCTCTCC GCCCGTGTTTCCTCCCCATTTCTGTCGCTGCCCGCGTATGGCTTTGGCAC GAAATGGGTGGGTTGATGGAATGAATCTCCGTTTGAACAACCAGGCTTGC CCAGGAAGCCTCAGAGCGGGAGCGGTTCGCCCGCAGCAAGCGGAACAGCC CGCAGCGACCGCGATCGCAGGCGGAAGAGGAGCAGAAGGAGGAGGAGGCG GGGCAGCCGCAACAGCTGCAGCAGCAGGAGGGGGAGGATGGACAGCCTGT AGCGGGCGACGCATCGGTACCCGCGGCCGGCTCAGAGGATGTCGTTTTGG AAGACAAGGCAGCGGCGGCGGCAGCGGCGGGAGGGGAGGCGGGACCGGAA GCCGAGGCTGCTACCGCCACGGTGTCCGCGGAAAGCGCAGCCGCGGGGCC CCTTGGTTTCTCGACGGCGGACCCCGCAGCAGCGGCAGCGGCAGCGGCAG CGGCAGCGGCGGTGGCGGTGGCCGCCCCTGTCGATGATGACGCCCCCGCC GCCGCTCGCGACAGCGAACAACGATCCCTCGACGATGACGCGGACGAGGG GGTGGTGGTGGTACCGGAGGACGCCGGCGCCGGCGCCGGAGATGATGATA GTGGCGGCGATGCCTCGAAGAAGGAAGATGCCGATGCCGATGCCAACGGC GAGTCTTCTTCTCCGGCTGCTGATGCTGCTGATGCTGCTGGTCGCCCCGA GCTGACGGTGGAAGTCGGAGACGTTGTCAACGGCGGTACGTCGGCGGCGG CGGCGGCGGCCTCGGGGGGCACGGCGGCTGCTCTCTCCGCTCCCTCGGAG GAGGAGTCGGCCATCGGCGACCTGGGTGGCGGCGGCGGCGGCAGGAGGCC TTCGGGGAATGCGGCCGGCCGGCCCACCTTCGAGAGGAAGTCTTCTTCCG TCATGGACCTAATCCGAGAGAGGGAGAAGGCCGCCCAGTCGGCCCGTCTG CCGCCGTCCGCCCGTAAGGAGACCTCGGCGGCGCACTCGCCGAGCCTGGC GGCGGCGCTGACGCGGGGCAAGGCGGGCGCCAGGCCCTGGCTGGGTTCTT CCGGGAACAACACCCCGGCCGCGGCCACGAGCACCCCGAGAGGGGGCTCT TCCATGTTCTTCTCCTCCACGCCTAAGGGTTCCACCGCAGCTGCTGCGAG GAGCGGCTTCTCCGCGACAGCCCCCGCCGTGGCCTCTACTGGCGGCGACG ATGCGACGGCCGGGAAGGAGGAAGAAGAGGAAGAGGATAAGGTTGCCAGT CTCGCGCCGGCGGAAGCAAGCGCGGGGGCCGGCGGTGGTGCCGGCGCCGG CGAGAAGGCCCTGTCGCCGTCGATGGCGGCGGCGCGGATGCGCAAGACCG TGGACCGATCTATGTGGAGCTCGGCGCCGTCGTCGAGCGGGGCGGGGAGC AGCAGGCCGGGCTTGTCGGCGACGTGGGCGTTTAACTCCGCCGCCGCCGG CAAGCAGCAGAAGAGCTCCGAGGAAGCCGCACAGAAAGGTGGTCCGGCTG CAGAGACGGAAGACGAAGGGTCAGCGGCGGCGACGACGACGACGGCTACG GCGTCGACACCGGCGGCGGTAGTGGACTGCCCGCCGCCCGCCGGGTTTGC GGCGGCGAAGGCGATGTTCGCGTCGACGGGGGGCATCCGCGCCAACAGCA GGCCGGCGGCGGCATCGGCGGTTGCGGCGGCGGATGTGCTGGCAGCGGCG GCGGCAGAACGCGAATCGTCAGCAACAGCAGCAGCAGCAGGGGCTGGGGC TGGGTCATCTTCTGTGCAGCAGGAGGTGGTGGTGCCGGCCTCCCCCGCCG GCTTCGCGGCCGCCAAGGCGCTGTTCGCCTCTACCGGAGGCATCCCCTCC AGCAGCAAGCCTTCGGTGCCGCCGCCGTCCAAGCCAAGGGCCAGCACCGG CACCGCCGCCGCCGCGTACGCGCGCGCCGCGGCCACGAGCAACTCCACCA GCGTCCCGGCCCCCAGGGCCACCACAAAGCCTTGGGAGAAGAAAACCCCG GCCGCTGGCGGCGGTGGCGCAAGCGGGGCTTCTTGGGGTTCCGCCGCTTC CGCTTCCGCTTCCGCTTCCGCTTCCGCTTCCGCTTCCGCTTCCGCCGCTG CCGCTGCCACGACCGACAGCAGCAGCGACGAGGACGGCGAGCCCAGCTCG TCCGCCGGGGGCGGGCGCTCCCTCTCCCCGGTCACCACCCCCGGCGCCGG CGGCGCCGCGGCCAAGGGCTCCACCTCTCGCCACCACCAGAAGAGCAGCG AGCCGCGCGTTTCCCCGGCGCCGGCGCCGGCGCCGGCGGCGCAGCTCTCG TCTTCGTCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14773:1..3209-

>mRNA_E-fasciculatus_F_contig14773.3410.1 ID=mRNA_E-fasciculatus_F_contig14773.3410.1|Name=mRNA_E-fasciculatus_F_contig14773.3410.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4848bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14773:1..3209- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGTGTGACGGATCAGAGCGGTGCCCCTAACTGCCTGTCGGTCGTGGC
GGGAGTCATGTCCGTCGTGCTGCAGGCGTTGAATCGCCAGGACGCCTTGT
CGTGGGCGAGCCATCTCTACCAGATGTGTGTGACGGATCAGAGCGGTGCC
CCTAACTGCCTGTCGGTCGTGGCGGGAGTCATGTCCGTCGTGCTGCAGGC
GTTGAATCGCCAGGACGCCTTGTCGTGGGCGAGCCATCTCTACCAGGCAA
GTGCGGTGGCCAACGGCGGAGGCTACCTGTTGGACCAGGAGAGGGACCAG
GAGGTCGCCTACGAGGAGGAGAGACGCCGCAGGCAAGTGCGGTGGCCAAC
GGCGGAGGCTACCTGTTGGACCAGGAGAGGGACCAGGAGGTCGCCTACGA
GGAGGAGAGACGCCGCAGGCTTGCCCAGGAAGCCTCAGAGCGGGAGCGGT
TCGCCCGCAGCAAGCGGAACAGCCCGCAGCGACCGCGATCGCAGGCGGAA
GAGGAGCAGAAGGAGGAGGAGGCGGGGCAGCCGCAACAGCTGCAGCAGCA
GGAGGGGGAGGATGGACAGCCTGTAGCGGGCGACGCATCGGTACCCGCGG
CCGGCTCAGAGGATGTCGTTTTGGAAGACAAGGCAGCGGCGGCGGCAGCG
GCGGGAGGGGAGGCGGGACCGGAAGCCGAGGCTGCTACCGCCACGGTGTC
CGCGGAAAGCGCAGCCGCGGGGCCCCTTGGTTTCTCGACGGCGGACCCCG
CAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGTGGCGGTGGCCGCC
CCTGTCGATGATGACGCCCCCGCCGCCGCTCGCGACAGCGAACAACGATC
CCTCGACGATGACGCGGACGAGGGGGTGGTGGTGGTACCGGAGGACGCCG
GCGCCGGCGCCGGAGATGATGATAGTGGCGGCGATGCCTCGAAGAAGGAA
GATGCCGATGCCGATGCCAACGGCGAGTCTTCTTCTCCGGCTGCTGATGC
TGCTGATGCTGCTGGTCGCCCCGAGCTGACGGTGGAAGTCGGAGACGTTG
TCAACGGCGGTACGTCGGCGGCGGCGGCGGCGGCCTCGGGGGGCACGGCG
GCTGCTCTCTCCGCTCCCTCGGAGGAGGAGTCGGCCATCGGCGACCTGGG
TGGCGGCGGCGGCGGCAGGAGGCCTTCGGGGAATGCGGCCGGCCGGCCCA
CCTTCGAGAGGAAGTCTTCTTCCGTCATGGACCTAATCCGAGAGAGGGAG
AAGGCCGCCCAGTCGGCCCGTCTGCCGCCGTCCGCCCGTAAGGAGACCTC
GGCGGCGCACTCGCCGAGCCTGGCGGCGGCGCTGACGCGGGGCAAGGCGG
GCGCCAGGCCCTGGCTGGGTTCTTCCGGGAACAACACCCCGGCCGCGGCC
ACGAGCACCCCGAGAGGGGGCTCTTCCATGTTCTTCTCCTCCACGCCTAA
GGGTTCCACCGCAGCTGCTGCGAGGAGCGGCTTCTCCGCGACAGCCCCCG
CCGTGGCCTCTACTGGCGGCGACGATGCGACGGCCGGGAAGGAGGAAGAA
GAGGAAGAGGATAAGGTTGCCAGTCTCGCGCCGGCGGAAGCAAGCGCGGG
GGCCGGCGGTGGTGCCGGCGCCGGCGAGAAGGCCCTGTCGCCGTCGATGG
CGGCGGCGCGGATGCGCAAGACCGTGGACCGATCTATGTGGAGCTCGGCG
CCGTCGTCGAGCGGGGCGGGGAGCAGCAGGCCGGGCTTGTCGGCGACGTG
GGCGTTTAACTCCGCCGCCGCCGGCAAGCAGCAGAAGAGCTCCGAGGAAG
CCGCACAGAAAGGTGGTCCGGCTGCAGAGACGGAAGACGAAGGGTCAGCG
GCGGCGACGACGACGACGGCTACGGCGTCGACACCGGCGGCGGTAGTGGA
CTGCCCGCCGCCCGCCGGGTTTGCGGCGGCGAAGGCGATGTTCGCGTCGA
CGGGGGGCATCCGCGCCAACAGCAGGCCGGCGGCGGCATCGGCGGTTGCG
GCGGCGGATGTGCTGGCAGCGGCGGCGGCAGAACGCGAATCGTCAGCAAC
AGCAGCAGCAGCAGGGGCTGGGGCTGGGTCATCTTCTGTGCAGCAGGAGG
TGGTGGTGCCGGCCTCCCCCGCCGGCTTCGCGGCCGCCAAGGCGCTGTTC
GCCTCTACCGGAGGCATCCCCTCCAGCAGCAAGCCTTCGGTGCCGCCGCC
GTCCAAGCCAAGGGCCAGCACCGGCACCGCCGCCGCCGCGTACGCGCGCG
CCGCGGCCACGAGCAACTCCACCAGCGTCCCGGCCCCCAGGGCCACCACA
AAGCCTTGGGAGAAGAAAACCCCGGCCGCTGGCGGCGGTGGCGCAAGCGG
GGCTTCTTGGGGTTCCGCCGCTTCCGCTTCCGCTTCCGCTTCCGCTTCCG
CTTCCGCTTCCGCTTCCGCCGCTGCCGCTGCCACGACCGACAGCAGCAGC
GACGAGGACGGCGAGCCCAGCTCGTCCGCCGGGGGCGGGCGCTCCCTCTC
CCCGGTCACCACCCCCGGCGCCGGCGGCGCCGCGGCCAAGGGCTCCACCT
CTCGCCACCACCAGAAGAGCAGCGAGCCGCGCGTTTCCCCGGCGCCGGCG
CCGGCGCCGGCGGCGCAGCTCTCGTCTTCGTCCGCTTGCCCAGGAAGCCT
CAGAGCGGGAGCGGTTCGCCCGCAGCAAGCGGAACAGCCCGCAGCGACCG
CGATCGCAGGCGGAAGAGGAGCAGAAGGAGGAGGAGGCGGGGCAGCCGCA
ACAGCTGCAGCAGCAGGAGGGGGAGGATGGACAGCCTGTAGCGGGCGACG
CATCGGTACCCGCGGCCGGCTCAGAGGATGTCGTTTTGGAAGACAAGGCA
GCGGCGGCGGCAGCGGCGGGAGGGGAGGCGGGACCGGAAGCCGAGGCTGC
TACCGCCACGGTGTCCGCGGAAAGCGCAGCCGCGGGGCCCCTTGGTTTCT
CGACGGCGGACCCCGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCG
GTGGCGGTGGCCGCCCCTGTCGATGATGACGCCCCCGCCGCCGCTCGCGA
CAGCGAACAACGATCCCTCGACGATGACGCGGACGAGGGGGTGGTGGTGG
TACCGGAGGACGCCGGCGCCGGCGCCGGAGATGATGATAGTGGCGGCGAT
GCCTCGAAGAAGGAAGATGCCGATGCCGATGCCAACGGCGAGTCTTCTTC
TCCGGCTGCTGATGCTGCTGATGCTGCTGGTCGCCCCGAGCTGACGGTGG
AAGTCGGAGACGTTGTCAACGGCGGTACGTCGGCGGCGGCGGCGGCGGCC
TCGGGGGGCACGGCGGCTGCTCTCTCCGCTCCCTCGGAGGAGGAGTCGGC
CATCGGCGACCTGGGTGGCGGCGGCGGCGGCAGGAGGCCTTCGGGGAATG
CGGCCGGCCGGCCCACCTTCGAGAGGAAGTCTTCTTCCGTCATGGACCTA
ATCCGAGAGAGGGAGAAGGCCGCCCAGTCGGCCCGTCTGCCGCCGTCCGC
CCGTAAGGAGACCTCGGCGGCGCACTCGCCGAGCCTGGCGGCGGCGCTGA
CGCGGGGCAAGGCGGGCGCCAGGCCCTGGCTGGGTTCTTCCGGGAACAAC
ACCCCGGCCGCGGCCACGAGCACCCCGAGAGGGGGCTCTTCCATGTTCTT
CTCCTCCACGCCTAAGGGTTCCACCGCAGCTGCTGCGAGGAGCGGCTTCT
CCGCGACAGCCCCCGCCGTGGCCTCTACTGGCGGCGACGATGCGACGGCC
GGGAAGGAGGAAGAAGAGGAAGAGGATAAGGTTGCCAGTCTCGCGCCGGC
GGAAGCAAGCGCGGGGGCCGGCGGTGGTGCCGGCGCCGGCGAGAAGGCCC
TGTCGCCGTCGATGGCGGCGGCGCGGATGCGCAAGACCGTGGACCGATCT
ATGTGGAGCTCGGCGCCGTCGTCGAGCGGGGCGGGGAGCAGCAGGCCGGG
CTTGTCGGCGACGTGGGCGTTTAACTCCGCCGCCGCCGGCAAGCAGCAGA
AGAGCTCCGAGGAAGCCGCACAGAAAGGTGGTCCGGCTGCAGAGACGGAA
GACGAAGGGTCAGCGGCGGCGACGACGACGACGGCTACGGCGTCGACACC
GGCGGCGGTAGTGGACTGCCCGCCGCCCGCCGGGTTTGCGGCGGCGAAGG
CGATGTTCGCGTCGACGGGGGGCATCCGCGCCAACAGCAGGCCGGCGGCG
GCATCGGCGGTTGCGGCGGCGGATGTGCTGGCAGCGGCGGCGGCAGAACG
CGAATCGTCAGCAACAGCAGCAGCAGCAGGGGCTGGGGCTGGGTCATCTT
CTGTGCAGCAGGAGGTGGTGGTGCCGGCCTCCCCCGCCGGCTTCGCGGCC
GCCAAGGCGCTGTTCGCCTCTACCGGAGGCATCCCCTCCAGCAGCAAGCC
TTCGGTGCCGCCGCCGTCCAAGCCAAGGGCCAGCACCGGCACCGCCGCCG
CCGCGTACGCGCGCGCCGCGGCCACGAGCAACTCCACCAGCGTCCCGGCC
CCCAGGGCCACCACAAAGCCTTGGGAGAAGAAAACCCCGGCCGCTGGCGG
CGGTGGCGCAAGCGGGGCTTCTTGGGGTTCCGCCGCTTCCGCTTCCGCTT
CCGCTTCCGCTTCCGCTTCCGCTTCCGCTTCCGCCGCTGCCGCTGCCACG
ACCGACAGCAGCAGCGACGAGGACGGCGAGCCCAGCTCGTCCGCCGGGGG
CGGGCGCTCCCTCTCCCCGGTCACCACCCCCGGCGCCGGCGGCGCCGCGG
CCAAGGGCTCCACCTCTCGCCACCACCAGAAGAGCAGCGAGCCGCGCGTT
TCCCCGGCGCCGGCGCCGGCGCCGGCGGCGCAGCTCTCGTCTTCGTCC
back to top