mRNA_E-fasciculatus_F_contig14763.3404.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14763.3404.1
Unique NamemRNA_E-fasciculatus_F_contig14763.3404.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: D7FVH2_ECTSI (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH2_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.160e-51
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            +VYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI
Sbjct: 1284 EVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 1370
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A6H5JBI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBI4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.580e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    4 VYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            VYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI
Sbjct: 1290 VYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 1375
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A835Z597_9STRA (MyTH4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z597_9STRA)

HSP 1 Score: 165 bits (417), Expect = 8.130e-48
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            + YLQIMKQLT NPKP+S AKGWQVMCM C TFLPSM+FENYLLNF+LEKCQ +GAEACYA+YCLHTLEGMMSSRTNEGIVPTLEEI
Sbjct:  192 EAYLQIMKQLTENPKPESAAKGWQVMCMCCGTFLPSMEFENYLLNFVLEKCQADGAEACYARYCLHTLEGMMSSRTNEGIVPTLEEI 278
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A835YPP0_9STRA (Myosin I, high molecular weight-Acanthamoeba sp n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.120e-44
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            + YLQIMKQLT NPKP+S AKGWQV+CM C TFLPSMDFENYLLNF+L+K Q EGAEACYA+YCLHTLEGMMSSRTNEGIVPTLEEI
Sbjct: 1323 EAYLQIMKQLTDNPKPESAAKGWQVLCMCCGTFLPSMDFENYLLNFVLDKSQSEGAEACYARYCLHTLEGMMSSRTNEGIVPTLEEI 1409
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A7R9YD73_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD73_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.500e-28
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++Y Q+MKQL+SNPKP+S AKGWQ+MCM  STF P++DFENYLLNFIL+K +  GA   YAKYCL  LEGM++S  + G VP++EEI
Sbjct:  780 EIYCQVMKQLSSNPKPESIAKGWQMMCMCVSTFPPTIDFENYLLNFILKKVESRGAVKNYAKYCLRALEGMLTSGAS-GFVPSVEEI 865
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A482S091_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S091_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 4.680e-24
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQI-EGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++YLQI+KQL++NP+P+S AKGWQVMCM   TF PS +FE++LL++I+EK     GA   YA+YCL TLE M++S    G VP++EEI
Sbjct:  151 EIYLQIVKQLSNNPRPESVAKGWQVMCMCVGTFPPSFEFESFLLHYIIEKRDRGRGAVVDYARYCLRTLEAMLNSGDGTGFVPSVEEI 238
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A7S2FEI0_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FEI0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.840e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++Y+QIMKQLT NP  DS AKGWQVMCM  S F PS DFE+YLLNF+L + + +GA   YA+YCL +LEG+++S      +PT+EEI
Sbjct: 1417 EIYMQIMKQLTKNPTADSIAKGWQVMCMCVSCFPPSSDFEDYLLNFMLMQREKKGAVKNYARYCLRSLEGILTSG-GSNYIPTVEEI 1502
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A7S3HK87_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK87_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.570e-22
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQI-EGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++Y+ I+KQL++NP+P+S AKGWQVMCM   TF PS +FEN+LL++I+EK     GA   YA+YCL TLE +++S    G VP++EEI
Sbjct:  245 EIYMLIIKQLSNNPRPESVAKGWQVMCMCVGTFPPSPEFENFLLHYIIEKRDRGRGAVIDYARYCLRTLEAILNSGDGTGFVPSVEEI 332
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A2R5G113_9STRA (Myosin-6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G113_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.250e-19
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++Y+Q+ K LT+NPKP+S  + WQ+MCM   TF PS DF+ +LLNF+LE   + G    Y++Y L  L+GM+  R   G VP ++EI
Sbjct: 1296 EIYIQLCKHLTNNPKPESVGRAWQLMCMAVGTFPPSDDFKMFLLNFLLEHVHVGGLVGSYSRYALRRLDGMLI-RGASGFVPNIDEI 1381
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BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Match: A0A8H8N7D2_9AGAM (Rho GTPase-activating-like protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8N7D2_9AGAM)

HSP 1 Score: 79.0 bits (193), Expect = 3.200e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QVYLQIMKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQ-IEGAEACYAKYCLHTLEGMMSSRTNEGIVPTLEEI 261
            ++Y Q++KQLT NP P+ST +GWQ++C+   TF PS +FE YL +F+L K +  EG     AKYCLH L  +++ +   G  PT +EI
Sbjct:  598 EIYCQVVKQLTDNPNPESTFRGWQLLCVLLVTFPPSKNFEGYLRSFMLGKVKHTEGRVDVMAKYCLHRLP-VIAKKGPRGKPPTAQEI 684
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14763.3404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVH2_ECTSI1.160e-5198.85Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A6H5JBI4_9PHAE1.580e-51100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z597_9STRA8.130e-4886.21MyTH4 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YPP0_9STRA4.120e-4485.06Myosin I, high molecular weight-Acanthamoeba sp n=... [more]
A0A7R9YD73_9STRA2.500e-2863.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A482S091_9ARCH4.680e-2455.68Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2FEI0_9STRA1.840e-2357.47Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3HK87_9STRA1.570e-2253.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R5G113_9STRA7.250e-1945.98Myosin-6 n=1 Tax=Hondaea fermentalgiana TaxID=2315... [more]
A0A8H8N7D2_9AGAM3.200e-1545.45Rho GTPase-activating-like protein n=2 Tax=Ceratob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14763contigE-fasciculatus_F_contig14763:30..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D7FVH2
Preferred nameMyo22
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG4229@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size243
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14763.3404.1prot_E-fasciculatus_F_contig14763.3404.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14763 48..1054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.7674096-UTR-E-fasciculatus_F_contig14763:29..471622927959.7674096-UTR-E-fasciculatus_F_contig14763:29..47Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14763 30..47 +
1695995767.6354647-UTR-E-fasciculatus_F_contig14763:29..471695995767.6354647-UTR-E-fasciculatus_F_contig14763:29..47Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14763 30..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.8049297-CDS-E-fasciculatus_F_contig14763:47..2001622927959.8049297-CDS-E-fasciculatus_F_contig14763:47..200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14763 48..200 +
1695995767.6521473-CDS-E-fasciculatus_F_contig14763:47..2001695995767.6521473-CDS-E-fasciculatus_F_contig14763:47..200Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14763 48..200 +
1622927959.819924-CDS-E-fasciculatus_F_contig14763:964..10541622927959.819924-CDS-E-fasciculatus_F_contig14763:964..1054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14763 965..1054 +
1695995767.6604729-CDS-E-fasciculatus_F_contig14763:964..10541695995767.6604729-CDS-E-fasciculatus_F_contig14763:964..1054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14763 965..1054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14763.3404.1

>prot_E-fasciculatus_F_contig14763.3404.1 ID=prot_E-fasciculatus_F_contig14763.3404.1|Name=mRNA_E-fasciculatus_F_contig14763.3404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=81bp
MKQLTSNPKPDSTAKGWQVMCMGCSTFLPSMDFENYLLNFILEKCQIEGA
EACYAKYCLHTLEGMMSSRTNEGIVPTLEEI
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mRNA from alignment at E-fasciculatus_F_contig14763:30..1054+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14763.3404.1 ID=mRNA_E-fasciculatus_F_contig14763.3404.1|Name=mRNA_E-fasciculatus_F_contig14763.3404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1025bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14763:30..1054+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTACTTGCAGATAATGAAGCAGCTCACGAGCAACCCTAAGCCGGA
CAGCACTGCCAAGGGGTGGCAGGTGATGTGCATGGGGTGCAGCACCTTCC
TCCCGAGCATGGACTTCGAGAACTACCTGCTGAACTTCATCCTCGAGAAG
TGCCAAATAGAGGGAGCGGAGGTGCGTGTTGAGAAGCGAGGCGGGAGCGA
ACAAGTTGACGCTCGGCAGCCTGTTGCTGTGAAGTTGGGTTGTTGTTGAT
GATGGTGAACATGTCTGTGTTGGTGATTGTGGTAAAAAGGTGTGATCTGT
TGCGTTGTTGCCTTTGGACATATGATCGTGATGGTGGTGTGGGTGATGTC
CTCCCGTCCGGGGGTCCCAACACGTGGCCGAGAGCTCCTCCAACAGTCCA
ACCATGTTGCAAAAATAGGAAGTCACGTGCTACCTACACGTCACCGCTAC
TTGCTGCTGCGCGCGGTGGTATCTATCACAGCAAAAGTACTGTACGCACG
TCGGAAAACATGAGTCGTCTCAGGTCGAGATCGGAGGAAGCACACGTCCT
CTGCTGGTCCTCTTCTGTAAACGGAAATGGCCAACATCTCGCATCTCACA
CACACCCCGTCGTCGTCTCCCTCCCCCCGTGCAGCACTTTCCATCCTAAC
CCTAGCTAGACTTATTCCGGTGAATGCGTCGTGTTTGTCTTGTGCGCGTG
CAACGCGAAGTACTGCCTACTGCCTCCCAACCTCCCAACCTAGTCCTGCA
CTTGCGTGCGTCTTGTGTACGCGAAACCACTAATAACCTAATCCTACACT
TGGCGAGCGCCACGCGCCCGTGTGTCCCTGTACTGCTGAAGGCGTGCTTT
ACCGCCTGCTGCCTTCCAAACCCCTACGACGTATTCCTGCGCTTTCGTAC
AACGCCGTGCGTGTGTGTCCCTGTACTTGTTGTAGGCGTGCTACGCAAAG
TACTGCCTACACACGTTGGAAGGCATGATGTCTTCCCGGACCAACGAGGG
CATTGTGCCCACGCTGGAGGAGATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14763:30..1054+

>mRNA_E-fasciculatus_F_contig14763.3404.1 ID=mRNA_E-fasciculatus_F_contig14763.3404.1|Name=mRNA_E-fasciculatus_F_contig14763.3404.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14763:30..1054+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCAGCTCACGAGCAACCCTAAGCCGGACAGCACTGCCAAGGGGTG
GCAGGTGATGTGCATGGGGTGCAGCACCTTCCTCCCGAGCATGGACTTCG
AGAACTACCTGCTGAACTTCATCCTCGAGAAGTGCCAAATAGAGGGAGCG
GAGATGAAGCAGCTCACGAGCAACCCTAAGCCGGACAGCACTGCCAAGGG
GTGGCAGGTGATGTGCATGGGGTGCAGCACCTTCCTCCCGAGCATGGACT
TCGAGAACTACCTGCTGAACTTCATCCTCGAGAAGTGCCAAATAGAGGGA
GCGGAGGCGTGCTACGCAAAGTACTGCCTACACACGTTGGAAGGCATGAT
GTCTTCCCGGACCAACGAGGGCATTGTGCCCACGCTGGAGGAGATCGCGT
GCTACGCAAAGTACTGCCTACACACGTTGGAAGGCATGATGTCTTCCCGG
ACCAACGAGGGCATTGTGCCCACGCTGGAGGAGATC
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