mRNA_E-fasciculatus_F_contig14761.3403.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14761.3403.1
Unique NamemRNA_E-fasciculatus_F_contig14761.3403.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14761.3403.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.060e-118
Identity = 252/343 (73.47%), Postives = 266/343 (77.55%), Query Frame = 1 
Query:    1 QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTIQVLKKLLEERREALAGVPPAAADTFTAVAGGC-NGWQEEETAEGAVLDGGFRSEVEESNPSPLATETVAXXXXXXXXXXATRDAIDSNEAAAEGXXXXXXXXXXXXXXXXXXXXXGAAANPQTLMHHVAMPVSGHHASMIMAPGFTGVPGHHVPTPSHGIPGHPGGPIFFAVPMYMPQGQGIP-AAAATAATAAVENAAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVI--DAMKPVPAPSGKKTWAVPAG--YQSMMTLQMPQFVTQALSAEEGNEKPTHAVCA 1011
            +VNEKFDQLLQVLEEAEATSGLEPPAAK+GKTAAHACINGRRVEVLSRTIQV+KKLL ERREALAGVPP A DT  AVA G  NGWQEE TAEG VLDGGFRSEVEE+           XXXXXXXXX  TRD IDSNEAAAEG              XXX    G  A   ++MHHVAM VSGHH SM+MAPGFTGVPGH VP+P HGIPGHPGGPIFFAVPMY+PQGQG+P  AA+TA TAA E+AAQ P           XXXXXXXXXXXXXXXXXXXXX     DA + VPAPSGKKTWAVPAG  YQSMMTLQMPQFVTQALS EEG+EKPTHAVCA
Sbjct:  233 EVNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEE-TAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXX--TRDVIDSNEAAAEGADAQAEAAIAATMVXXXE---GXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPSPPHGIPGHPGGPIFFAVPMYIPQGQGMPPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569
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BLAST of mRNA_E-fasciculatus_F_contig14761.3403.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 9.200e-55
Identity = 136/171 (79.53%), Postives = 142/171 (83.04%), Query Frame = 1 
Query:  520 MHHVAMPVSGHHASMIMAPGFTGVPGHHVPTPSHGIPGHPGGPIFFAVPMYMPQGQGIPAAAATAATAAVENAAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----GVIDAMKPVPAPSGKKTWAVPAG--YQSMMTLQMPQFVTQALSAEEGNEKPTHAVCA 1011
            MHHVAM VSGHH SM+MAPGFTGVPGH VP+P HGIPGHPGGPIFFAVPMY+PQGQG+PAAA               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GV+DA + VPAPSGKKTWAVPAG  YQSMMTLQMPQFVTQALS EEGNEKPTHAVCA
Sbjct:    1 MHHVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQHGIPGHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATEAVPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14761.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE2.060e-11873.47BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI9.200e-5579.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14761contigE-fasciculatus_F_contig14761:2119..3132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbHLH domain protein
Ec32 orthologEc-16_004620.1
Exons1
Model size1014
Cds size1014
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.7093127-CDS-E-fasciculatus_F_contig14761:2118..31321622927959.7093127-CDS-E-fasciculatus_F_contig14761:2118..3132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14761 2119..3132 -
1695995767.6265001-CDS-E-fasciculatus_F_contig14761:2118..31321695995767.6265001-CDS-E-fasciculatus_F_contig14761:2118..3132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14761 2119..3132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14761.3403.1prot_E-fasciculatus_F_contig14761.3403.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14761 2119..3132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14761.3403.1

>prot_E-fasciculatus_F_contig14761.3403.1 ID=prot_E-fasciculatus_F_contig14761.3403.1|Name=mRNA_E-fasciculatus_F_contig14761.3403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=338bp
QVNEKFDQLLQVLEEAEATSGLEPPAAKEGKTAAHACINGRRVEVLSRTI
QVLKKLLEERREALAGVPPAAADTFTAVAGGCNGWQEEETAEGAVLDGGF
RSEVEESNPSPLATETVAAAAAAAAAAAATRDAIDSNEAAAEGVDAQAEA
AVAALSATVAVSSEGAAANPQTLMHHVAMPVSGHHASMIMAPGFTGVPGH
HVPTPSHGIPGHPGGPIFFAVPMYMPQGQGIPAAAATAATAAVENAAQAP
AATAVAAPSLAATPAAAADLAPTPVAEAAAAPGVIDAMKPVPAPSGKKTW
AVPAGYQSMMTLQMPQFVTQALSAEEGNEKPTHAVCA*
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mRNA from alignment at E-fasciculatus_F_contig14761:2119..3132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14761.3403.1 ID=mRNA_E-fasciculatus_F_contig14761.3403.1|Name=mRNA_E-fasciculatus_F_contig14761.3403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14761:2119..3132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTCAACGAAAAGTTCGACCAGCTGCTTCAGGTCCTGGAAGAGGCCGA
GGCAACCTCCGGCCTGGAGCCCCCCGCCGCGAAGGAGGGCAAGACCGCGG
CGCACGCATGCATTAACGGGCGACGAGTGGAGGTGCTTTCCCGCACTATC
CAGGTGCTCAAGAAGCTCCTCGAGGAGAGACGCGAGGCGCTCGCCGGCGT
GCCGCCTGCGGCGGCGGATACCTTCACCGCTGTCGCCGGAGGTTGTAACG
GCTGGCAGGAGGAGGAGACGGCGGAAGGGGCGGTCCTGGACGGCGGCTTC
CGAAGCGAGGTTGAGGAGAGCAACCCCTCACCCTTGGCAACGGAGACCGT
TGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCAGCTACCCGCGACGCAA
TCGATTCCAACGAAGCTGCCGCCGAAGGAGTCGACGCCCAGGCAGAGGCA
GCGGTTGCCGCGTTGTCGGCGACGGTGGCGGTGTCGTCGGAGGGAGCTGC
CGCCAACCCCCAGACCCTCATGCATCACGTCGCCATGCCCGTGTCAGGAC
ACCACGCGTCGATGATCATGGCGCCTGGCTTCACTGGGGTGCCTGGCCAT
CACGTGCCCACACCCTCGCATGGCATACCCGGCCATCCGGGCGGGCCTAT
TTTCTTTGCGGTGCCGATGTACATGCCGCAGGGACAAGGCATTCCGGCGG
CGGCGGCAACCGCGGCAACCGCGGCAGTAGAGAACGCTGCTCAGGCGCCC
GCGGCGACGGCAGTGGCAGCGCCGTCGTTGGCGGCTACTCCGGCCGCCGC
TGCTGATCTCGCGCCAACGCCGGTGGCGGAAGCAGCGGCAGCGCCGGGGG
TCATTGACGCGATGAAGCCCGTACCCGCCCCCTCGGGCAAGAAGACGTGG
GCAGTGCCCGCTGGCTACCAGTCGATGATGACCTTGCAGATGCCTCAGTT
CGTGACCCAGGCCTTGTCTGCGGAGGAGGGGAACGAGAAGCCCACGCACG
CGGTGTGCGCATAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14761:2119..3132-

>mRNA_E-fasciculatus_F_contig14761.3403.1 ID=mRNA_E-fasciculatus_F_contig14761.3403.1|Name=mRNA_E-fasciculatus_F_contig14761.3403.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2028bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14761:2119..3132- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTCAACGAAAAGTTCGACCAGCTGCTTCAGGTCCTGGAAGAGGCCGA
GGCAACCTCCGGCCTGGAGCCCCCCGCCGCGAAGGAGGGCAAGACCGCGG
CGCACGCATGCATTAACGGGCGACGAGTGGAGGTGCTTTCCCGCACTATC
CAGGTGCTCAAGAAGCTCCTCGAGGAGAGACGCGAGGCGCTCGCCGGCGT
GCCGCCTGCGGCGGCGGATACCTTCACCGCTGTCGCCGGAGGTTGTAACG
GCTGGCAGGAGGAGGAGACGGCGGAAGGGGCGGTCCTGGACGGCGGCTTC
CGAAGCGAGGTTGAGGAGAGCAACCCCTCACCCTTGGCAACGGAGACCGT
TGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCAGCTACCCGCGACGCAA
TCGATTCCAACGAAGCTGCCGCCGAAGGAGTCGACGCCCAGGCAGAGGCA
GCGGTTGCCGCGTTGTCGGCGACGGTGGCGGTGTCGTCGGAGGGAGCTGC
CGCCAACCCCCAGACCCTCATGCATCACGTCGCCATGCCCGTGTCAGGAC
ACCACGCGTCGATGATCATGGCGCCTGGCTTCACTGGGGTGCCTGGCCAT
CACGTGCCCACACCCTCGCATGGCATACCCGGCCATCCGGGCGGGCCTAT
TTTCTTTGCGGTGCCGATGTACATGCCGCAGGGACAAGGCATTCCGGCGG
CGGCGGCAACCGCGGCAACCGCGGCAGTAGAGAACGCTGCTCAGGCGCCC
GCGGCGACGGCAGTGGCAGCGCCGTCGTTGGCGGCTACTCCGGCCGCCGC
TGCTGATCTCGCGCCAACGCCGGTGGCGGAAGCAGCGGCAGCGCCGGGGG
TCATTGACGCGATGAAGCCCGTACCCGCCCCCTCGGGCAAGAAGACGTGG
GCAGTGCCCGCTGGCTACCAGTCGATGATGACCTTGCAGATGCCTCAGTT
CGTGACCCAGGCCTTGTCTGCGGAGGAGGGGAACGAGAAGCCCACGCACG
CGGTGTGCGCATAACAGGTCAACGAAAAGTTCGACCAGCTGCTTCAGGTC
CTGGAAGAGGCCGAGGCAACCTCCGGCCTGGAGCCCCCCGCCGCGAAGGA
GGGCAAGACCGCGGCGCACGCATGCATTAACGGGCGACGAGTGGAGGTGC
TTTCCCGCACTATCCAGGTGCTCAAGAAGCTCCTCGAGGAGAGACGCGAG
GCGCTCGCCGGCGTGCCGCCTGCGGCGGCGGATACCTTCACCGCTGTCGC
CGGAGGTTGTAACGGCTGGCAGGAGGAGGAGACGGCGGAAGGGGCGGTCC
TGGACGGCGGCTTCCGAAGCGAGGTTGAGGAGAGCAACCCCTCACCCTTG
GCAACGGAGACCGTTGCTGCTGCTGCTGCTGCTGCGGCTGCGGCTGCAGC
TACCCGCGACGCAATCGATTCCAACGAAGCTGCCGCCGAAGGAGTCGACG
CCCAGGCAGAGGCAGCGGTTGCCGCGTTGTCGGCGACGGTGGCGGTGTCG
TCGGAGGGAGCTGCCGCCAACCCCCAGACCCTCATGCATCACGTCGCCAT
GCCCGTGTCAGGACACCACGCGTCGATGATCATGGCGCCTGGCTTCACTG
GGGTGCCTGGCCATCACGTGCCCACACCCTCGCATGGCATACCCGGCCAT
CCGGGCGGGCCTATTTTCTTTGCGGTGCCGATGTACATGCCGCAGGGACA
AGGCATTCCGGCGGCGGCGGCAACCGCGGCAACCGCGGCAGTAGAGAACG
CTGCTCAGGCGCCCGCGGCGACGGCAGTGGCAGCGCCGTCGTTGGCGGCT
ACTCCGGCCGCCGCTGCTGATCTCGCGCCAACGCCGGTGGCGGAAGCAGC
GGCAGCGCCGGGGGTCATTGACGCGATGAAGCCCGTACCCGCCCCCTCGG
GCAAGAAGACGTGGGCAGTGCCCGCTGGCTACCAGTCGATGATGACCTTG
CAGATGCCTCAGTTCGTGACCCAGGCCTTGTCTGCGGAGGAGGGGAACGA
GAAGCCCACGCACGCGGTGTGCGCATAA
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