mRNA_E-fasciculatus_F_contig14759.3399.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14759.3399.1
Unique NamemRNA_E-fasciculatus_F_contig14759.3399.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14759.3399.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.250e-36
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 GNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLE-KRPAPKPADPEMV 195
            GNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLE +RPAPKPADPEMV
Sbjct:  126 GNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKPADPEMV 191
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BLAST of mRNA_E-fasciculatus_F_contig14759.3399.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.770e-35
Identity = 75/110 (68.18%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 GNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLE-KRPAPKPADPEMV----------SGSGGAXXX---------------GQPAAPGNTV 252
            GNLFKPVDPEGCTWQID+PGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLE +RPAPKPADPEMV          S +GG                   GQ AAPGNTV
Sbjct:  228 GNLFKPVDPEGCTWQIDDPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKPADPEMVRKAIEAIKAKSAAGGGTKLTAKPGPAKVGAGGRGGQQAAPGNTV 337
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14759.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI6_ECTSI2.250e-3696.97CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JLQ0_9PHAE2.770e-3568.18CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14759contigE-fasciculatus_F_contig14759:8..2728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-27_003850.1
Exons4
Model size619
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14759.3399.1prot_E-fasciculatus_F_contig14759.3399.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14759 920..2667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.0449288-UTR-E-fasciculatus_F_contig14759:7..561622927959.0449288-UTR-E-fasciculatus_F_contig14759:7..56Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 8..56 +
1695995767.3087626-UTR-E-fasciculatus_F_contig14759:7..561695995767.3087626-UTR-E-fasciculatus_F_contig14759:7..56Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 8..56 +
1622927959.0588853-UTR-E-fasciculatus_F_contig14759:779..9191622927959.0588853-UTR-E-fasciculatus_F_contig14759:779..919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 780..919 +
1695995767.3169475-UTR-E-fasciculatus_F_contig14759:779..9191695995767.3169475-UTR-E-fasciculatus_F_contig14759:779..919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 780..919 +
1622927959.116755-UTR-E-fasciculatus_F_contig14759:2667..27281622927959.116755-UTR-E-fasciculatus_F_contig14759:2667..2728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 2668..2728 +
1695995767.3586018-UTR-E-fasciculatus_F_contig14759:2667..27281695995767.3586018-UTR-E-fasciculatus_F_contig14759:2667..2728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14759 2668..2728 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927959.0737314-CDS-E-fasciculatus_F_contig14759:919..9411622927959.0737314-CDS-E-fasciculatus_F_contig14759:919..941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 920..941 +
1695995767.325685-CDS-E-fasciculatus_F_contig14759:919..9411695995767.325685-CDS-E-fasciculatus_F_contig14759:919..941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 920..941 +
1622927959.0935824-CDS-E-fasciculatus_F_contig14759:1994..22801622927959.0935824-CDS-E-fasciculatus_F_contig14759:1994..2280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 1995..2280 +
1695995767.3341398-CDS-E-fasciculatus_F_contig14759:1994..22801695995767.3341398-CDS-E-fasciculatus_F_contig14759:1994..2280Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 1995..2280 +
1622927959.10592-CDS-E-fasciculatus_F_contig14759:2606..26671622927959.10592-CDS-E-fasciculatus_F_contig14759:2606..2667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 2607..2667 +
1695995767.343068-CDS-E-fasciculatus_F_contig14759:2606..26671695995767.343068-CDS-E-fasciculatus_F_contig14759:2606..2667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14759 2607..2667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14759.3399.1

>prot_E-fasciculatus_F_contig14759.3399.1 ID=prot_E-fasciculatus_F_contig14759.3399.1|Name=mRNA_E-fasciculatus_F_contig14759.3399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MVSGSGGAGGGGQPAAPGNTVTAAASNGNTPRSAAGTAGGPTPAAGVAAA
GAGKSPTGAGAGSGDAAGAAAAGAAAAAAAAATPPSSQKSGKGGGKKKNR
KKNCCCRATLELKGGREVENKA*
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mRNA from alignment at E-fasciculatus_F_contig14759:8..2728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14759.3399.1 ID=mRNA_E-fasciculatus_F_contig14759.3399.1|Name=mRNA_E-fasciculatus_F_contig14759.3399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2721bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14759:8..2728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAACTTGTTCAAGCCGGTCGACCCGGAGGGCTGCACTTGGCAGATCGG
TGCGTCTTTCACTGCTTTACAACGAAGTGCTGTACTGTAATTCGATCGTG
GAAGTCGAGTCGCATTTGAAGCGCTCGGGCGTTGGTGCGCCGGAGTGTTT
ATAGTGTTTCTTTCTGTCATGGTCATGCTGTGTGGTGTAGTCGTGGTGGC
GGTCGCGGTGGTGGCGATATTGTTTTCGTGTTTTGGTGTTGGGGGTCGAA
ATCGCTGCTCTCGATGATGCGACCCATCATCCGAGTGTACAGTGCACGAA
AACTCCAACGCACCTTGATGCACGCACGGGTGGTGCAACGAGCACATGAA
AAAGACGACACATTTTCAGATAGATCTCGGCAATGAAACGCAGCACGAGC
ACCAGCAGGAGAGGATGCTCTGCCGATTCTTGTAGACTTGACGTTCTGGT
TGGCGGTACCAGTCTATCGCTCCCCTTCTGCTGACAGTAGTGGTCGCCAC
CGAAAGTACGCTGGTGGTATTCTACAGAAGGCGGACACGTACCTCTGACA
ATGACAAGACAACAGGGGTTGTTCAATTTTTATGCAGCTTTTCGTCAAAT
AAACTGGTCCATGTCGGGCATCGCTGCCGCTACCATAGCTCGCCGCTTAC
GGTGTGGTATGCCACAACGATCAGATGACTCCTTAATGTCGGTCATGTGT
GCGGCCTCAATACGTGGCACAATGTGATCGACTTCTGCGTTGCTTTTCCC
ATGCACCTTTTTTTTTTTTCAGATAATCCGGGGCCGGGACAGCCGAAAGA
GGTGACCATCACTCTCCTCAAGGCCGAGCCCGCCAAGAGTCGCGAGGCGT
GGTGGCGCGCCCCGTTGAAAGGCCTCGAGAAACGACCGGCACCTAAGCCA
GCCGATCCGGAGATGGTGAGTGGTAGTGGTGGTGGTGGTGGTGGGCCAGA
AGGTGGCGAGAAACGATGCACGACAGGGTACTGTAGGTACCTCGTGGGCT
GTGCCCTCTGCTCCAAGGTGTGGGTAGCTAATATGCTGTGCCTTGTGCTC
ATGGGGGTAGGTGACTCATCTGCTGTGCCTTCTCTAGGTTAACCCGATGC
AAATAGATGTAAAGATGACCTATATATAGGCCCGACAGCTCTAAGCCGGG
ATGTACAGCAGTACAGTACCCCCTCCCTACCCCCGAAAAAGGCGAGCTCG
AGCTTAAGGGAAGGGAAGGGAACTGATTTTGTCTTGTCGCCTGTGTGGGG
AATGGTGATAAGAAGGGATGGGCGAGGGAAACCAAGGGAAAACGCGGGGT
GGGGTTACATACCCAGAGGAGAGGAGAGCCCACCAAGAAATGTGTATTGA
TGGCATGGAAAGATGGGCTGATGAAAGAATAGCGGCCCCTGGCCGGCAGC
CTAGTTTGGGGCGTGGCTAGCGGAAGGAAAGAATTAAAGAGGTTGAAAAA
GATAGGAACGGATTCTACAGGCGGGTGGGGAGGTTACACGCGTACAAAAG
CGAGGAGTGAGGAAGAGGAATGCCGATGGAAAGAGGAGCACGTGCCCGAC
CGATCATACAGAGAAAAGTCACGAGCGGGTGGGTGCACAGCGTTTTTGAG
AGTGACAGGGGGAGTCTTAAGATGCAACGACCGCAAAGCTAGCATATAAC
ATTTCCCTGGTTTTGATGTGTACGATGTCGTTCGTGTCGGTCCTGCCCTC
AATCTCCCTCGTAATTATGCGCGCACGCATACTCCAGCATCGACTCCCAC
TTCTCCTTGTCTATTATCTTACGTTCCTAGCACCTTTACCCAACATCCAC
GACTACTATGATACTCCGCATGTACGCTTGCTCATTTTAGCCTGGCTCGT
TGGCTGACCGACCCCCCCCCCTCTGCCACGGAACAAAAACGTGAAGGTGC
GGAAAGCCATCGAGGCCATCAAGGCCAAGTCGGCGGCGGGCGGTGGGACC
AAGCTCACCGCTAAGCCCGGCCCCACAGGAGTTGGAGCCGGCGGCGGCGG
CCAGCCGGCGGCCCCAGGGAACACGGTCACCGCCGCAGCCTCCAACGGGA
ATACCCCTCGCTCTGCCGCGGGTACTGCCGGAGGGCCGACACCGGCGGCG
GGCGTAGCTGCTGCCGGCGCAGGAAAGTCCCCAACGGGGGCGGGGGCGGG
GAGCGGGGACGCCGCCGGGGCGGCGGCAGCGGGGGCGGCGGCGGCAGCGG
CGGCGGCAGCGACCCCACCGTCGTCCCAAAAGTCGGGCAAGGGCGGGGGA
AAGAAGAAGAACCGCAAGAAGAAGTGAAGTGAACAATGATACGGAGTGGC
ACTCATCCACATTCGACTCGGCTTGGATTTGACTGAGATCTGACCTTTGG
TTGGTTTGATTCATCGGTCGGTCGATTTGGGTCAGCTAGGTGGTATTACC
CTACAAGGAGTTGGATCACCCGGAGAAGATTTTTCTTTTTTGGTTCTGGT
GAGGCTTTCGGTCGAATTGTTGAGCCACCAGCTACTGCAGTAGCCTCTTC
TTCGGGTGCATCTTGTGTGTTCCGACGTAGAGCGTACGTTTTGCACGATC
ATGCATCGGCAGTATGAGCGATGTTTTTGTCTTTTTTATCTCTCTGCAGT
TGCTGTTGTCGTGCGACGCTGGAACTGAAGGGGGGTCGAGAGGTGGAAAA
CAAAGCATGAACGAACAGCGGACGATTGGGGACAGGCCCGTCGCGCCGCC
CTAGCCTCCGTTGTAGCCATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14759:8..2728+

>mRNA_E-fasciculatus_F_contig14759.3399.1 ID=mRNA_E-fasciculatus_F_contig14759.3399.1|Name=mRNA_E-fasciculatus_F_contig14759.3399.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14759:8..2728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGAGTGGTAGTGGTGGTGATGGTGAGTGGTAGTGGTGGTGCCGGCG
GCGGCGGCCAGCCGGCGGCCCCAGGGAACACGGTCACCGCCGCAGCCTCC
AACGGGAATACCCCTCGCTCTGCCGCGGGTACTGCCGGAGGGCCGACACC
GGCGGCGGGCGTAGCTGCTGCCGGCGCAGGAAAGTCCCCAACGGGGGCGG
GGGCGGGGAGCGGGGACGCCGCCGGGGCGGCGGCAGCGGGGGCGGCGGCG
GCAGCGGCGGCGGCAGCGACCCCACCGTCGTCCCAAAAGTCGGGCAAGGG
CGGGGGAAAGAAGAAGAACCGCAAGAAGAACCGGCGGCGGCGGCCAGCCG
GCGGCCCCAGGGAACACGGTCACCGCCGCAGCCTCCAACGGGAATACCCC
TCGCTCTGCCGCGGGTACTGCCGGAGGGCCGACACCGGCGGCGGGCGTAG
CTGCTGCCGGCGCAGGAAAGTCCCCAACGGGGGCGGGGGCGGGGAGCGGG
GACGCCGCCGGGGCGGCGGCAGCGGGGGCGGCGGCGGCAGCGGCGGCGGC
AGCGACCCCACCGTCGTCCCAAAAGTCGGGCAAGGGCGGGGGAAAGAAGA
AGAACCGCAAGAAGAATTGCTGTTGTCGTGCGACGCTGGAACTGAAGGGG
GGTCGAGAGGTGGAAAACAAAGCATGATTGCTGTTGTCGTGCGACGCTGG
AACTGAAGGGGGGTCGAGAGGTGGAAAACAAAGCATGA
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