|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig14750.3395.1 vs. uniprot
Match: D8LAT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAT0_ECTSI) HSP 1 Score: 435 bits (1118), Expect = 1.170e-147 Identity = 251/300 (83.67%), Postives = 259/300 (86.33%), Query Frame = 1
Query: 109 SQDSACGSPFRSSTSSRAAGSGRXXXGGGHHGVDVDSAEPSERRXXXXRKPSMGQGEGQSIVAAAMATFGGGVGGTPGAIPEEGRDLSRSFQGSSADDSGVGAXXXXXXXXXXXXXXXXXXXEGGEAMSFRNTSESMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPTSLNGQSGAYAEGITPKRSPVSKLLKDVLPNDEGGRSTPAAVRQLQVEVQRLRQRNAQAHSKEEKYKSEIAHLKRLMAVMESQIAKADQDLADANSSRSRSARQM 1008
SQDSACGSPFRSSTSSR AGSGR GGHHGV VD+AEPSERR RK SM QGEGQSIVAAAMA FGGGV PGAIPEEGR LSRSFQGS + D G + XXXXXX GGEA SFRNT+E+MEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPTSLNGQSGA+AEG+TPKRSPVSKLLKDV PNDEGGRSTPAAVRQLQVEVQRLRQRNAQAHSKEEKYKSEIAHLKRLMAVMESQ+A AD DLA ANSSRSRSARQM
Sbjct: 80 SQDSACGSPFRSSTSSRTAGSGRRSSTGGHHGVGVDTAEPSERRRRRHRKSSMAQGEGQSIVAAAMANFGGGVDANPGAIPEEGRVLSRSFQGSDSADPGDDSAAAEAAVGRPAXXXXXX---GGEATSFRNTAETMEDDERETLLALLTGAYGQVNDLTDELKISLDKLNDTEKELKAVNAAHAKLQAMPNPSPTSLNGQSGAHAEGVTPKRSPVSKLLKDVFPNDEGGRSTPAAVRQLQVEVQRLRQRNAQAHSKEEKYKSEIAHLKRLMAVMESQVANADPDLASANSSRSRSARQM 376
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_006480.1 |
| Exons | 5 |
| Model size | 1011 |
| Cds size | 1011 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14750.3395.1 >prot_E-fasciculatus_F_contig14750.3395.1 ID=prot_E-fasciculatus_F_contig14750.3395.1|Name=mRNA_E-fasciculatus_F_contig14750.3395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=337bp
RRSGSSRSFHHKRSASRGSNHDLITPTSHGRPGLGASQDSACGSPFRSST
SSRAAGSGRRSSGGGHHGVDVDSAEPSERRRRRHRKPSMGQGEGQSIVAA
AMATFGGGVGGTPGAIPEEGRDLSRSFQGSSADDSGVGAAAAEAAVVGRP
AAAAAAADEGGEAMSFRNTSESMEDDERETLLALLTGAYGQVNDLTDELK
ISLDKLNDTEKELKAVNAAHAKLQAMPNPSPTSLNGQSGAYAEGITPKRS
PVSKLLKDVLPNDEGGRSTPAAVRQLQVEVQRLRQRNAQAHSKEEKYKSE
IAHLKRLMAVMESQIAKADQDLADANSSRSRSARQM* back to topmRNA from alignment at E-fasciculatus_F_contig14750:433..3230- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14750.3395.1 ID=mRNA_E-fasciculatus_F_contig14750.3395.1|Name=mRNA_E-fasciculatus_F_contig14750.3395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14750:433..3230- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCGCTCCGGCAGCAGTCGATCGTTCCATCACAAGCGCAGCGCGAGCCG
CGGCAGCAACCATGATCTCATCACCCCAACGTCGCACGGCCGGCCCGGCC
TCGGCGCCAGCCAAGACTCGGCCTGCGGCTCTCCATTCCGGTCCTCAACA
TCCTCCCGCGCTGCGGGGAGTGGTCGGCGCTCTAGCGGGGGCGGACATCA
TGGCGTCGATGTTGATTCTGCCGAGCCTTCAGAGCGCCGGCGCCGCCGGC
ATAGGAAGCCTTCGATGGGGCAGGGGGAGGGGCAGTCGATCGTCGCCGCG
GCGATGGCTACCTTCGGAGGCGGTGTCGGCGGAACCCCCGGGGCCATCCC
AGAGGAAGGGAGAGACTTGTCGAGGTCGTTCCAGGGGTCCTCTGCTGATG
ATTCGGGGGTTGGTGCGGCTGCTGCTGAGGCAGCTGTGGTGGGTAGGCCG
GCGGCGGCAGCGGCGGCGGCGGACGAGGGAGGCGAGGCTATGTCCTTCCG
GAATACATCGGAGTCGATGGAGGACGACGAGAGAGAGACGCTGCTGGCAT
TGCTCACCGGGGCGTACGGCCAGGTGGGTGGCTGATGGGAGGGACAGGGG
TGTGTGTGTGTTTCGGAGGGAAGGGGGGTGAGGGAGACAGAGGGACAGGG
ATGTGTGTGTGTGTTTCGGAGGGAAGGGGGGGTGAGGGAGACAGACTTCA
CTGACAGACGAATAGCTACGACAGGCAGACAGAGAAAAGCAGACAGAGAA
AGGCAGACAGACGGACAGGCAGCGACGTGAGACAAAGATAGACACACCAA
GTTCCTGTATGTCTGCACGTGCTCATACAGTCCCGTCAACTAGACGCAAG
AAGCATCGCTCATTTTTTTCTGCCGTGTCGGTTGCCCACGAATGTTCTCC
TCACTACTTGGTGCTGTTGGCTCCAAACAACATCAGGTGAACGACCTCAC
GGACGAGCTCAAGATATCCCTCGACAAGCTCAACGACACAGAGAAGGAGC
TGAAGGCGGTTAACGCTGCCCACGCCAAGCTACAGGCCATGCCCAACCCA
TCCCCCACATGTGAGCCGGCGGAAGAAACGGTGGTTTTGTGTTGTTGCTG
TTGCTGCTGCTGTCGGTTGTTTTTGGCGTGTTGGTATGAGGCCGGGGATG
GCGAGAGGGCGTACGGCTTAGCAGGCACGACAGACGCGTCACCCGGGGTA
GTCGTCTTGTGTGTTGTCGGGTGTTGAGCAGTTGGCGGCCTCGAGGGTTG
ATGGCTTTCGAACATTCCAACGATCCTTGCCGCCAAACCCGTTCTGCAAG
CGTGATGGGCAACACTGACCCTGATCTTTGGTTCCTCTGCGACCACACTG
CCCCAGACATGCGGGCAGATGGTTCGCTCATCCCTTAACCTTAACATCAT
CCCGCCCGCTCTTCTCGCACATTTCCCCTGCTATGTTTCTGTATCCCTCT
CCCCCGCGGTGCGTGTTTTCAGCTTTGAACGGCCAATCAGGCGCGTACGC
AGAGGGAATAACCCCGAAGCGATCTCCCGTTTCGAAGCTGCTGAAGGATG
TCTTACCGAACGACGAGGTAAGCCTCGCTACATAAATACTCCATGGCTGA
GATCCCCGCTCTCACGGTACGCATCTTGTGTTCCATTGCGCGTGATTGCC
GTGGTGTGAAAGTTTCTTGATGACTTTCACACATTCGAAACATGCTTGCT
TGGGATTATCATCGTGTACGTCTCACGGACTGCTTGCTAAAATAGCTGCC
TTCAGGGCGTCTTTGGCGTTTTTTACGGTGGATTTTGTGCGGAGGCTCTA
GAGCCGAGTGCCTATCATAGTTGGAATCTTCAAGTTCATATCCGGAACGC
TCGCGTATTCCTGTAAGTACCGTGCTGGTATGACCGGTTTGCCTACCGTC
CACGCCGCCGGCTATGCAACGTCTCGCCTCTTTGGAAACGCTGTGTCTGC
CCGGCGAAGAGTTTTATTCCTGTGCTATGTAGGGTGACAGGGGTGGTGCC
TGCATGAAAGGGACCCCCCCGCTATTGCTGCAGGTTGCTCTTGTGGCGAT
GAACGATTTTTTTCTTTTTTATACGGGTTATGTATGCGTGCGTGGAATGT
GGAACTTAATGACGGTACGTTGTTTTGCGTGGCAGGGCGGGAGGTCGACG
CCGGCTGCCGTTAGGCAGCTACAGGTGGAGGTGCAAAGGCTGAGACAGAG
GAACGCACAGGCTCATTCCAAGGAGGAGAAGTACAAGTCCGAGATCGCCC
ACTTGAAGAGGTAGGGGGCGACCGCGACACACACAAGAGAGAGCCGGGGG
GAGAGCACACATATTGAAAGGTCACATAGATTCAGCACAGATGGGCAATG
TGTAGATGGATGCTGAGTCAACGGCAGAGAAAATGGAAATAAGGGCAGCA
CAGATAGAGAGAGGGACGGGGGGGGAGGGAGAGAAAACGGGCACTTGAAG
CCTTGCGAGAGTGCCTCAATCAACACATGTGGAACTTCAGAGAAACAGGC
TGCTGCTGCTCCGTTGTGCGCTATGTCCACGACTTTGTTCGCGCTGGTTG
CGGAGGATCGACCCCGTGCGTCTCTCAATTGTAACAGATTCGCTTAAACT
GAAAAGGTTAAGGTTTCTGATCCCAGACCCCTCGCCGTCGTCCCCTCCCC
TTTCCTGTCCCTCGTCGCGTTGTTTTCGGCTGTTACGTATGTACATGTAT
GCAGACTGATGGCGGTGATGGAATCGCAGATCGCCAAAGCCGACCAGGAC
CTTGCTGATGCCAACTCATCCCGGAGCCGTTCTGCGAGACAAATGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14750:433..3230- >mRNA_E-fasciculatus_F_contig14750.3395.1 ID=mRNA_E-fasciculatus_F_contig14750.3395.1|Name=mRNA_E-fasciculatus_F_contig14750.3395.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2022bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14750:433..3230- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCGCTCCGGCAGCAGTCGATCGTTCCATCACAAGCGCAGCGCGAGCCG
CGGCAGCAACCATGATCTCATCACCCCAACGTCGCACGGCCGGCCCGGCC
TCGGCGCCAGCCAAGACTCGGCCTGCGGCTCTCCATTCCGGTCCTCAACA
TCCTCCCGCGCTGCGGGGAGTGGTCGGCGCTCTAGCGGGGGCGGACATCA
TGGCGTCGATGTTGATTCTGCCGAGCCTTCAGAGCGCCGGCGCCGCCGGC
ATAGGAAGCCTTCGATGGGGCAGGGGGAGGGGCAGTCGATCGTCGCCGCG
GCGATGGCTACCTTCGGAGGCGGTGTCGGCGGAACCCCCGGGGCCATCCC
AGAGGAAGGGAGAGACTTGTCGAGGTCGTTCCAGGGGTCCTCTGCTGATG
ATTCGGGGGTTGGTGCGGCTGCTGCTGAGGCAGCTGTGGTGGGTAGGCCG
GCGGCGGCAGCGGCGGCGGCGGACGAGGGAGGCGAGGCTATGTCCTTCCG
GAATACATCGGAGTCGATGGAGGACGACGAGAGAGAGACGCTGCTGGCAT
TGCTCACCGGGGCGTACGGCCAGAGGCGCTCCGGCAGCAGTCGATCGTTC
CATCACAAGCGCAGCGCGAGCCGCGGCAGCAACCATGATCTCATCACCCC
AACGTCGCACGGCCGGCCCGGCCTCGGCGCCAGCCAAGACTCGGCCTGCG
GCTCTCCATTCCGGTCCTCAACATCCTCCCGCGCTGCGGGGAGTGGTCGG
CGCTCTAGCGGGGGCGGACATCATGGCGTCGATGTTGATTCTGCCGAGCC
TTCAGAGCGCCGGCGCCGCCGGCATAGGAAGCCTTCGATGGGGCAGGGGG
AGGGGCAGTCGATCGTCGCCGCGGCGATGGCTACCTTCGGAGGCGGTGTC
GGCGGAACCCCCGGGGCCATCCCAGAGGAAGGGAGAGACTTGTCGAGGTC
GTTCCAGGGGTCCTCTGCTGATGATTCGGGGGTTGGTGCGGCTGCTGCTG
AGGCAGCTGTGGTGGGTAGGCCGGCGGCGGCAGCGGCGGCGGCGGACGAG
GGAGGCGAGGCTATGTCCTTCCGGAATACATCGGAGTCGATGGAGGACGA
CGAGAGAGAGACGCTGCTGGCATTGCTCACCGGGGCGTACGGCCAGGTGA
ACGACCTCACGGACGAGCTCAAGATATCCCTCGACAAGCTCAACGACACA
GAGAAGGAGCTGAAGGCGGTTAACGCTGCCCACGCCAAGCTACAGGCCAT
GCCCAACCCATCCCCCACATGTGAACGACCTCACGGACGAGCTCAAGATA
TCCCTCGACAAGCTCAACGACACAGAGAAGGAGCTGAAGGCGGTTAACGC
TGCCCACGCCAAGCTACAGGCCATGCCCAACCCATCCCCCACATCTTTGA
ACGGCCAATCAGGCGCGTACGCAGAGGGAATAACCCCGAAGCGATCTCCC
GTTTCGAAGCTGCTGAAGGATGTCTTACCGAACGACGAGCTTTGAACGGC
CAATCAGGCGCGTACGCAGAGGGAATAACCCCGAAGCGATCTCCCGTTTC
GAAGCTGCTGAAGGATGTCTTACCGAACGACGAGGGCGGGAGGTCGACGC
CGGCTGCCGTTAGGCAGCTACAGGTGGAGGTGCAAAGGCTGAGACAGAGG
AACGCACAGGCTCATTCCAAGGAGGAGAAGTACAAGTCCGAGATCGCCCA
CTTGAAGAGGGCGGGAGGTCGACGCCGGCTGCCGTTAGGCAGCTACAGGT
GGAGGTGCAAAGGCTGAGACAGAGGAACGCACAGGCTCATTCCAAGGAGG
AGAAGTACAAGTCCGAGATCGCCCACTTGAAGAGACTGATGGCGGTGATG
GAATCGCAGATCGCCAAAGCCGACCAGGACCTTGCTGATGCCAACTCATC
CCGGAGCCGTTCTGCGAGACAAATGTGAACTGATGGCGGTGATGGAATCG
CAGATCGCCAAAGCCGACCAGGACCTTGCTGATGCCAACTCATCCCGGAG
CCGTTCTGCGAGACAAATGTGA back to top
|