mRNA_E-fasciculatus_F_contig1475.3393.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE) HSP 1 Score: 642 bits (1655), Expect = 6.470e-218 Identity = 327/357 (91.60%), Postives = 341/357 (95.52%), Query Frame = 1
Query: 1 MDRYLGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKAVKKLSTLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPDACGDSVVDRRLKKARKIKQQ---AVEGETWDVGPAAVSEAGGTTVMAMKRPFRAMHEQRGRLFTVEFLERRAAKGVTLETLKPILV 1062
MDRY+GSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTY +DS+NGRADPNRCGAAASPLLSAKS MNT IEGG+DSKLTAKLQKLQG+AV ESASERALKMDFF KVREFGNRLGLTHAMQEHACLLLR+AEDSGLF+VKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMF+VSLKALNKAVKKLS LEIE+APSLRGEHHIP LCDKLGLPPFV+VAA+HAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNP ACGD VVDRR KKARK +QQ AVEGETWDV PAAVSEAGGTTVMAMKRPFRAM+EQRGRLFTVEFLERRAAK VTLETLKPIL+
Sbjct: 1 MDRYMGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYAEDSNNGRADPNRCGAAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKLSNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGDGVVDRRSKKARKTQQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPILM 357
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: TF2B_DICDI (Transcription initiation factor IIB n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=TF2B_DICDI) HSP 1 Score: 102 bits (255), Expect = 7.780e-20 Identity = 74/262 (28.24%), Postives = 126/262 (48.09%), Query Frame = 1
Query: 25 MFCKEC-VAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAI---CVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKAVK--KLSTLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLV 792
++C C + + DI D G++ICR C VV+G+R +D+ +EW+T+ + S G ADPNR G +PLL + T +G +DS +LQ L + A K ++ + + L +Q+ A L R +D KK+ +G ++ A + CRQ +T KE++ + +V K +++ K K + + ++ E C L LP V A+H ++ A +V G P +V AA++ +V
Sbjct: 21 LWCMVCRIQDPDIIEDYAKGDLICRGCGVVVGDRIVDEHSEWRTFSNSESTG-ADPNRVGGPINPLLRDSALSTTVGKGSKDSGTLTRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDD------KKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMV 270
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: F0ZB51_DICPU (Uncharacterized protein gtf2b n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZB51_DICPU) HSP 1 Score: 102 bits (254), Expect = 1.680e-19 Identity = 76/262 (29.01%), Postives = 127/262 (48.47%), Query Frame = 1
Query: 25 MFCKEC-VAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAI---CVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKAVK--KLSTLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLV 792
++CK C V + DI D G++ICR C VV+G+R +D+ +EW+T+ + S G ADPNR G +PLL + T +G RDS +LQ L + A K ++ + + L +Q+ A L R +D KK+ +G ++ A + CRQ +T KE++ + +V K +++ K K + + ++ E C L LP V ++H ++ A +V G P +V AA++ +V
Sbjct: 46 LWCKICRVNDPDIIEDYAKGDLICRECGVVVGDRIVDEHSEWRTFSNSESTG-ADPNRVGGPINPLLRDSALSTTIGKGSRDSSSLNRLQNKSALGTGDRNLLAAFK-----EIGRMADHMNLPQTVQDRANELFRFMDD------KKSTKGRSVDGMVAAALYIACRQEHLSRTFKEIAALTNVPKKEISRCYKIMKETFSSVLNLQTISTEDFTSRFCSTLKLPIEVKKISEHVSKTAMDMGIVAGKSPISVTAASIYMV 295
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A024GL73_9STRA (TFIIB-type domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GL73_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.340e-19 Identity = 72/263 (27.38%), Postives = 131/263 (49.81%), Query Frame = 1
Query: 31 CKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNG-RADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKA---VKKLSTLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWN 807
C +C ++ DI D AG+++CR C +V+GER +DD EW+T+ +D G A +R G + +++ T + K+ Q + +N+ ++ K + ++RE L L + E A + ++AE G+ ++ E+ ++ AV + CRQ +T+KE+ V K + K+ +KK + ++A + +++ C +LGLP V A A++A L DG P+A+AA+ + LV + N
Sbjct: 8 CVDCGSD-DIVTDYGAGDVVCRNCGIVLGERIVDDTPEWRTFSNDDRGGDAASKSRVGQLEDQGIE-NATLTTILVDSTLDKINGNTQTTRLPKLNKESANIRRKQNMTNRIREISETLSLPKIIVECAMQVYQEAERKGIL-IRGPEKE-SVAAAVVFIACRQAGHARTLKELEGASGVMKKKIGKSFLILKKQLNFDFQQATTT---NYVERFCSRLGLPAKTQVIAHDVAKKAQTLGLTDGKSPTALAASVIYLVAAYTN 263
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: UPI0006451B5A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451B5A) HSP 1 Score: 101 bits (251), Expect = 3.220e-19 Identity = 83/268 (30.97%), Postives = 139/268 (51.87%), Query Frame = 1
Query: 7 RYLGSTMFCKECV-AESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGG--RDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFD-VSLKALNKAVKKLSTLEIEKA--PSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLV 792
+ L + + C C + DI D G++ICR C VVIG+R +D+ +EW+T+ + S G +DPNR G +PLLS S ++T I G +DS +++Q LA + +R L ++ F ++ G+ +GL + + A L +Q ED + + A+ +A A + CR +T KE+ + + VS K LN+ K + K ++ E + C L LP + AA+H ++ A+ +V G P +VAAA++ +V
Sbjct: 25 KELFNNVTCPVCKNPDPDIVEDYARGDLICRECGVVIGDRIVDEHSEWRTFSNSESTG-SDPNRVGGPTNPLLS-DSGLSTVIGKGNSKDSGALSRMQNRGALA----SGDRTL-LNGFKEISRMGDHMGLPQMVMDTANELYKQMEDKKSLKGRSADGFLA---ASLYIACRLKGITRTFKEICALSNNVSKKDLNRCYKLMKESLSTKVNLQAISTEDFMTRFCVNLQLPKEIKQAAEHVSRTATELGIVAGKNPISVAAASIYMV 282
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A8J4V4M4_9MYCE (TFIIB-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V4M4_9MYCE) HSP 1 Score: 99.0 bits (245), Expect = 1.930e-18 Identity = 77/259 (29.73%), Postives = 132/259 (50.97%), Query Frame = 1
Query: 25 MFCKEC-VAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFD-VSLKALNKAVKKLS-TLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLV 792
++C C V + DI D G++ICR C VVIG+R +D+ +EW+T+ + S G +DPNR G +PLL S+++T I G+ SK T+ L +LQ + + L F ++ + +GL + + A L R +D + + A+ + A L+ CR + +T KE+S + + VS K +++ K + + ++ + C L LP V AA++ ++ A +V G P +V AA++ LV
Sbjct: 34 LWCPVCKVTDPDIVEDYAKGDMICRECGVVIGDRIVDEHSEWRTFSNSESTG-SDPNRVGGPTNPLLR-DSALSTTI--GKGSKDTSSLTRLQNKSALGTGDRNLLAA--FKEIGRMADHMGLPQTVADLANELYRNMDDKKTIKGRSAD---GMYAAALLIACRHEKISRTFKEISALTNNVSKKDISRCFKIMKENIPNFNLQTISTDDFTTRFCSNLKLPVEVKKAAEYVSKTAMDMGIVAGKSPISVTAASIYLV 283
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A152A9B4_9MYCE (Transcription initiation factor IIB n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A9B4_9MYCE) HSP 1 Score: 98.6 bits (244), Expect = 2.600e-18 Identity = 78/256 (30.47%), Postives = 128/256 (50.00%), Query Frame = 1
Query: 49 ESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLL---TCRQWRRGQTMKEMSTMFDVS--LKALNKAVKKLSTLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLVCSC 801
+ DI D G++ICR C VV+G+R ID+ +EW+T+ + S G ADPNR G +PLL +++++T I G+ +K T L KLQ S L F+++ +RLGL + + A L R +D R K A+ +A + + T RQ++ + T D+S K + ++ +L+ ++ E I C +L LP V +A+H ++ A +V G P +V AA++ +V C
Sbjct: 42 DPDIVEDYAKGDLICRGCGVVLGDRIIDEHSEWRTFSNSESTG-ADPNRVGGPTNPLLR-EAALSTTI--GKGAKDTGSLSKLQNRNALGSGDRNLLAA--FSEIGRMVDRLGLPQTIHDKANELYRMMDDRKPLRGKSADGMMAAALYMACRIDGTTRQFKEIAILTSNVTKVDISRCYKTMKDSLSDYISLQ-----TITSEDFITRYCSELKLPLDVKKSAEHVSKTAQDMGIVSGKSPISVTAASIYMVSQC 286
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: R4X9C9_TAPDE (Transcription initiation factor IIB n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4X9C9_TAPDE) HSP 1 Score: 98.6 bits (244), Expect = 2.770e-18 Identity = 78/277 (28.16%), Postives = 136/277 (49.10%), Query Frame = 1
Query: 10 YLGSTMFCKECVAES-DIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIEGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNK---AVKKLSTLEIEKAPSLRGEHHIPP------------LCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLV 792
+L T+ CK C + ++ + AG+ +C TC +V+G+R ID +EW+T+ +D G DP+R GAA++PLL+ S ++T I SK A + N + + + + + L ++Q+ A L ++A+D+ + K E +A C+ + CRQ +T+KE+ T+ +S K L K A++KL E APS + P C++L LP + A + A++A +DG P ++AAA + ++
Sbjct: 17 HLVVTLMCKNCREDPPNLVEETSAGDTVCGTCGLVLGDRVIDTRSEWRTFSNDE--GGDDPSRVGAASNPLLNG-SQLDTLIA----SKDAAGQALARAQNRNSGMKGERNLVQAYKDISAMCDAISLPRSVQDIAKHLYKRADDTKSLKGKPVESIIAACI---FIACRQQNVPRTIKEICTLTSISKKDLGKCFKAIEKLLQAEGTNAPSGASQDQYVPTKATNAAELMIRFCNRLALPQKIVSACQELAKKAQVAGTLDGRSPISIAAAGIYMI 283
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A5C3QZ22_9AGAR (Cyclin-like protein n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3QZ22_9AGAR) HSP 1 Score: 98.2 bits (243), Expect = 4.150e-18 Identity = 77/271 (28.41%), Postives = 133/271 (49.08%), Query Frame = 1
Query: 13 LGSTMFCKECVAESDIYVDP-RAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHI---EGGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKAVKKL---------STLEIEKAPSLRG-EHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAV 783
L + C EC++++ V+ AG+++C +C +V+G+R +D +EW+T+ +D + DP+R GAA+ PL+ ++T I +GG S L+ +LQ+ + + S SER L + F + + ++ L + + A L ++A++ L R K E +A C+ + CRQ +T +E+ T+ VS K L + K L +T K G E + C+ L LPP V QA + G P ++A A+
Sbjct: 27 LAVRLICPECLSQNPNIVEEFGAGDLVCASCGLVLGDRIVDTRSEWRTFANDEGD---DPSRVGAASDPLMDGVEQLDTVISFRDGG--SGLSRELQRAATRSQSGSRSERNL-LTAFRDISSWCDQFTLPKTISDIAKQLYKRADEEKLLRGKPLEAVIAACI---FIACRQAHVPRTFREICTLTHVSKKMLGQCYKALEQAFNLSPGATASANKTGQTTGAEGLLGRFCNHLDLPPNVQAICSDIIIQARNLGIAAGRSPVSIAGGAI 288
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Match: A0A8H6X977_9AGAR (Transcription initiation factor IIB n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6X977_9AGAR) HSP 1 Score: 98.2 bits (243), Expect = 4.150e-18 Identity = 70/276 (25.36%), Postives = 131/276 (47.46%), Query Frame = 1
Query: 13 LGSTMFCKECVAES-DIYVDPRAGEIICRTCAVVIGERCIDDGAEWQTYVDDSSNGRADPNRCGAAASPLLSAKSSMNTHIE---GGRDSKLTAKLQKLQGLAVNESASERALKMDFFAKVREFGNRLGLTHAMQEHACLLLRQAEDSGLFRVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFDVSLKALNKAVKKL----------STLEIEKAPSLRGEHHIPPLCDKLGLPPFVAVAAKHAAQQASRWDLVDGMKPSAVAAAAVLLVCS 798
L + C EC+ + +I + +G+++CR C +V+G+R +D +EW+T+ +D + DP+R GAA+ PL+ + ++T + GG S + +LQ+ A + A L F + + ++ L + + A L +++++ L R K + +A+C+ + CRQ +T +E+ + VS K + + L S +PS E+ + C+ L LPP V QA + + DG P ++A A+ C+
Sbjct: 26 LSVRLMCPECIDPNPNIAEEFGSGDLVCRKCGLVLGDRIVDTRSEWRTFANDEGD---DPSRVGAASDPLMKGREQLDTVVSFRNGG--SGMARELQRAASRAQSSRAERNFLTA--FRDISSWCDQFSLPKTVSDIAKQLYKRSDEERLLRGKPLDAVIAVCI---FIACRQAHVPRTFQEIYNLTGVSKKTFGQCYRALEQAFNLTAGASAATSTPSPSAGPENMLARYCNHLDLPPNVQFICSDIIVQARKHGIADGRSPVSIAGGAIFFTCN 291 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1475.3393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1475.3393.1 >prot_E-fasciculatus_F_contig1475.3393.1 ID=prot_E-fasciculatus_F_contig1475.3393.1|Name=mRNA_E-fasciculatus_F_contig1475.3393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=355bp MDRYLGSTMFCKECVAESDIYVDPRAGEIICRTCAVVIGERCIDDGAEWQback to top mRNA from alignment at E-fasciculatus_F_contig1475:6378..11880+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1475.3393.1 ID=mRNA_E-fasciculatus_F_contig1475.3393.1|Name=mRNA_E-fasciculatus_F_contig1475.3393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5503bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1475:6378..11880+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1475:6378..11880+ >mRNA_E-fasciculatus_F_contig1475.3393.1 ID=mRNA_E-fasciculatus_F_contig1475.3393.1|Name=mRNA_E-fasciculatus_F_contig1475.3393.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2130bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1475:6378..11880+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |