mRNA_E-fasciculatus_F_contig14730.3388.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: D8LDR5_ECTSI (Endo-1,3-beta-glucanase, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR5_ECTSI) HSP 1 Score: 264 bits (674), Expect = 4.070e-86 Identity = 129/158 (81.65%), Postives = 132/158 (83.54%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
QYY SENAAVANGVLAITA+KED+SSR FYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTE+VNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW
Sbjct: 74 QYYLSENAAVANGVLAITAKKEDFSSR-------------------------FYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTESVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 206
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A0Q6LQI7_9BURK (Uncharacterized protein n=3 Tax=unclassified Rhizobacter TaxID=2640088 RepID=A0A0Q6LQI7_9BURK) HSP 1 Score: 132 bits (333), Expect = 3.700e-33 Identity = 78/164 (47.56%), Postives = 98/164 (59.76%), Query Frame = 1
Query: 1 QYY--RSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNN----LAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
QYY R ENA+VANGVL+I A KE + S G R YTS+++ T NK + YGR EAR++LP GGQGLWPAFWM+P D+ YG WAASGEIDI E+ N N L YG ++PNN+N +G+ F+ L ++HVYAVEW
Sbjct: 403 QYYTARPENASVANGVLSIKALKERFCSTDGCRD---------------------YTSARLRTLNKGDWLYGRMEARIKLP-GGQGLWPAFWMLPSDSVYGGWAASGEIDIMEAVNAGAAGGNTVYGTLHYGGSWPNNTN-SGKPFVPATS-ILNDFHVYAVEW 542
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: UPI0013ED0B97 (glycoside hydrolase family 16 protein n=1 Tax=Thioalkalivibrio sp. XN8 TaxID=2712863 RepID=UPI0013ED0B97) HSP 1 Score: 127 bits (319), Expect = 8.900e-33 Identity = 71/162 (43.83%), Postives = 95/162 (58.64%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNNLA----YGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
Q+Y +NA + +GVL ITA++E + + YTS+++ T+++F+FRYGR EAR+RLP GGQGLWPAFWM+ QD+ YG WAASGEIDI E N N + YG FPNN +GE ++ D T + +HVYAVEW
Sbjct: 111 QFYLPDNAQLDDGVLQITARREQIGAFR-------------------------YTSARINTRDRFAFRYGRFEARMRLP-GGQGLWPAFWMLAQDSPYGTWAASGEIDIMEGVNLGAAGGNRIYGTIHYGGEFPNNLE-SGESYVVATDVTTD-FHVYAVEW 244
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A7L7KRV3_9FIRM (Family 16 glycosylhydrolase n=1 Tax=Firmicutes bacterium zrk13 TaxID=2710922 RepID=A0A7L7KRV3_9FIRM) HSP 1 Score: 128 bits (322), Expect = 9.720e-33 Identity = 71/160 (44.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFT-EAVNNLAYGNAFPNNSNHNGECFLDVPDGT-LEEYHVYAVEW 474
QYYR EN+ V +G L I A+ ED+ V YTSSK+ TK++F+ YGR EAR++LP G GLWPAFWMMP+DN YG WA SGEIDI E++ +A + YG ++PNN +G D+P G ++ +HVYAVEW
Sbjct: 168 QYYREENSLVEDGFLVIEAKLEDFGG-------------------------VPYTSSKLVTKDRFAQTYGRFEARIKLPLGN-GLWPAFWMMPEDNVYGGWARSGEIDIMEAKGRLPYDASGAIHYGGSWPNNVYQSGHH--DLPQGEGIDTFHVYAVEW 299
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A6L8EF78_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EF78_9GAMM) HSP 1 Score: 126 bits (316), Expect = 1.330e-32 Identity = 71/164 (43.29%), Postives = 93/164 (56.71%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNN------LAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
Q+Y +NA + NG L ITA+++ RQG +TS+++ T+++F+FRYGR EAR+RLP GQGLWPAFW+MPQ+NAYG WAASGEIDI E+ N A + YG A P N + E VP + +HVYAVEW
Sbjct: 80 QWYLPDNAHIENGNLVITARRQ----RQG---------------------DFQFTSARINTRDRFAFRYGRIEARIRLP-AGQGLWPAFWLMPQENAYGGWAASGEIDIMEAVNPGAGAAGGNTVHGTIHYGGASPGNRSSGSE--YTVPGSITDGFHVYAVEW 215
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A7Y2U344_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2U344_9GAMM) HSP 1 Score: 125 bits (314), Expect = 4.790e-32 Identity = 72/162 (44.44%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNN----LAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
Q+Y ++A + NGVL ITA++E S+ GK YTS+++ T+++F+F YGR EAR+RLP GGQGLWPAFW++PQD AYG WAASGEID+ E+ N N L YG +PNN GE + VP ++HVYA+EW
Sbjct: 110 QWYLPDSAQLDNGVLVITARQE---SQNGKD----------------------YTSARINTRDRFAFAYGRIEARIRLP-GGQGLWPAFWLLPQDFAYGGWAASGEIDVMEAVNLGGAGGNTVHGTLHYGGEWPNNV-FTGESY-GVPTDATTDFHVYALEW 243
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A7Y2MWT9_9GAMM (Glycoside hydrolase family 16 protein (Fragment) n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2MWT9_9GAMM) HSP 1 Score: 124 bits (312), Expect = 4.990e-32 Identity = 71/162 (43.83%), Postives = 92/162 (56.79%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN----NFTEAVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
QYYR+ENA + +GVL ITAQ+E + YTS+++TT ++ +FRYGR EAR++LP GGQGLWPAFWM+ QD+ YG WAASGEIDI E+ N L YG FPNN +G+ D T + +H YA+EW
Sbjct: 94 QYYRAENAVLEDGVLKITAQQESVAGYN-------------------------YTSARITTADRVAFRYGRIEARMKLP-GGQGLWPAFWMLAQDSPYGNWAASGEIDIMEAINLGAAGGDSVFGTLHYGGEFPNNV-FSGDGTSVGSDPTAD-FHNYAIEW 227
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A2M7YQG2_9BACT (Uncharacterized protein n=1 Tax=bacterium CG_4_9_14_3_um_filter_65_15 TaxID=1975567 RepID=A0A2M7YQG2_9BACT) HSP 1 Score: 129 bits (323), Expect = 9.750e-32 Identity = 69/158 (43.67%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRNNFTEAVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
+YYRS+N VA G L +TA+ E Y +TS KVTT K SF YGR E R +LP GG G+WPAFWMMPQD+ YG WAASGEIDI ES N T L YG +P N++ + L +++H+YAVEW
Sbjct: 69 EYYRSQNVTVAGGNLVLTAKAESYGGAS-------------------------FTSGKVTTSGKRSFLYGRIEMRAKLPVGG-GMWPAFWMMPQDDVYGSWAASGEIDIMESANAMTSVGGALHYGGQWPTNTSTSSSTTLGGAS-FADDFHIYAVEW 199
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: A0A520X7H6_9GAMM (Glycoside hydrolase family 16 protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A520X7H6_9GAMM) HSP 1 Score: 124 bits (311), Expect = 1.280e-31 Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 1 QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN----NFTEAVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
+YY +NA + +G L ITA++E + + YTS+++ T+++F+ RYGR EAR+RLP GGQG+WPAFWM+ QD+ YG W ASGEIDI E+ N + + YG +FP++ +GE +L VP ++H YAVEW
Sbjct: 108 EYYLPDNAQLVDGKLTITAREEQIGAFK-------------------------YTSARINTRDRFAVRYGRIEARMRLP-GGQGIWPAFWMLGQDSPYGNWPASGEIDIMEAVNLGGAGGNTVLGTIHYGTSFPSDYEFSGESYL-VPSDATADFHTYAVEW 242
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Match: UPI0016775196 (family 16 glycosylhydrolase n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0016775196) HSP 1 Score: 125 bits (315), Expect = 2.040e-31 Identity = 70/164 (42.68%), Postives = 95/164 (57.93%), Query Frame = 1
Query: 1 QYY--RSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVQVFYTSSKVTTKNKFSFRYGRAEARLRLPPGGQGLWPAFWMMPQDNAYGKWAASGEIDIFESRN----NFTEAVNNLAYGNAFPNNSNHNGECFLDVPDGTLEEYHVYAVEW 474
QYY R +N+ VANGVL +TA++E Y+ G R YTS+++ T++K +RYGR E R R+P G QGLWPA WM+P D+AYG WAASGEIDI E+ N E L YG +PNN+ ++GE + P ++ +H YA+EW
Sbjct: 208 QYYTARPQNSHVANGVLTLTARQERYTGPDGTRE---------------------YTSARLRTQHKGDWRYGRVEVRARMPEG-QGLWPAIWMLPTDDAYGGWAASGEIDIMEAVNLNNGGGNEVHGTLHYGGEWPNNT-YSGEAYTP-PTSVVDHFHEYAIEW 347 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14730.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14730.3388.1 >prot_E-fasciculatus_F_contig14730.3388.1 ID=prot_E-fasciculatus_F_contig14730.3388.1|Name=mRNA_E-fasciculatus_F_contig14730.3388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=159bp QYYRSENAAVANGVLAITAQKEDYSSRQGKRHGSQAQPLRFPLKPYPKYVback to top mRNA from alignment at E-fasciculatus_F_contig14730:390..2316- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14730.3388.1 ID=mRNA_E-fasciculatus_F_contig14730.3388.1|Name=mRNA_E-fasciculatus_F_contig14730.3388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1927bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14730:390..2316- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14730:390..2316- >mRNA_E-fasciculatus_F_contig14730.3388.1 ID=mRNA_E-fasciculatus_F_contig14730.3388.1|Name=mRNA_E-fasciculatus_F_contig14730.3388.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14730:390..2316- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |