mRNA_E-fasciculatus_F_contig14729.3383.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14729.3383.1
Unique NamemRNA_E-fasciculatus_F_contig14729.3383.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A6H5KQX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX4_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.580e-29
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    4 QGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            +GHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG
Sbjct:    7 KGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 55
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A6H5KXP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXP8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.130e-27
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            + GHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG
Sbjct:  144 EDGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 193
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A835Z8M3_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8M3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.580e-25
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 QGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            +GHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVW+LSNCKL TNL+GH G
Sbjct:  146 EGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWSLSNCKLRTNLVGHNG 194
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A6T5NED6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NED6_HETAK)

HSP 1 Score: 102 bits (254), Expect = 4.980e-25
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            ++GHTEWVSCVRFSPSP APV+VSAGWDKLVKVW+L+NCKL TNLIGHTG
Sbjct:  144 EEGHTEWVSCVRFSPSPQAPVVVSAGWDKLVKVWSLTNCKLSTNLIGHTG 193
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: K8EQC7_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQC7_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 4.100e-23
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    4 QGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            +GHTEWVSCVRFSP+PS P+IVS GWDKLVKVW L+NCKL TNL+GHTG
Sbjct:  145 EGHTEWVSCVRFSPAPSNPIIVSCGWDKLVKVWNLNNCKLRTNLVGHTG 193
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A6U1PCN7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PCN7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.570e-23
Identity = 41/50 (82.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            ++GHTEWVSCVRFSPS +APVIVSAGWDKLVKVW+L++CKL TNLIGH+G
Sbjct:  144 EEGHTEWVSCVRFSPSATAPVIVSAGWDKLVKVWSLTDCKLRTNLIGHSG 193
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A7S2FMH3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FMH3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.770e-23
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    4 QGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            +GHTEWVSCVRFSPS +APVIVS GWDKLVKVW+L+NC+L TNL+GHTG
Sbjct:  160 EGHTEWVSCVRFSPSATAPVIVSCGWDKLVKVWSLANCRLRTNLVGHTG 208
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A7R9UZ45_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UZ45_DIALT)

HSP 1 Score: 94.7 bits (234), Expect = 9.300e-23
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            + GHTEWVSCVRFSPS S P+IVS GWDK+VKVW LSNCKL TNL+GHTG
Sbjct:  163 EDGHTEWVSCVRFSPSASNPLIVSCGWDKIVKVWNLSNCKLRTNLVGHTG 212
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A7S2F795_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F795_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.510e-22
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            ++GHTEWVSCVRFSPS +APVIVS GWDKLVKVW+LSNC+L T+L GHTG
Sbjct:  156 EEGHTEWVSCVRFSPSQTAPVIVSCGWDKLVKVWSLSNCRLRTDLAGHTG 205
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BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Match: A0A8J5XE79_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XE79_DIALT)

HSP 1 Score: 94.7 bits (234), Expect = 4.350e-22
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG 150
            + GHTEWVSCVRFSPS S P+IVS GWDK+VKVW LSNCKL TNL+GHTG
Sbjct:  148 EDGHTEWVSCVRFSPSASNPLIVSCGWDKIVKVWNLSNCKLRTNLVGHTG 197
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14729.3383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQX4_9PHAE3.580e-2997.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXP8_9PHAE1.130e-2796.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z8M3_9STRA2.580e-2589.80WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6T5NED6_HETAK4.980e-2586.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8EQC7_9CHLO4.100e-2381.63Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A6U1PCN7_9STRA5.570e-2382.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FMH3_9STRA6.770e-2381.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UZ45_DIALT9.300e-2380.00Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S2F795_9STRA3.510e-2280.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J5XE79_DIALT4.350e-2280.00Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14729contigE-fasciculatus_F_contig14729:152..304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue6.6e-22
Seed eggNOG ortholog2880.D8LNZ9
Preferred nameLACK1
KEGG koko:K14753
KEGG Pathwayko05162,map05162
GOsGO:0000003,GO:0000122,GO:0000429,GO:0000430,GO:0000433,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006996,GO:0007154,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0022414,GO:0022607,GO:0030154,GO:0030587,GO:0031252,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032502,GO:0032879,GO:0032991,GO:0034728,GO:0035091,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0040008,GO:0042221,GO:0042304,GO:0042393,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043486,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045892,GO:0045893,GO:0045894,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046890,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070784,GO:0070887,GO:0071103,GO:0071496,GO:0071824,GO:0071840,GO:0071944,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090702,GO:0099120,GO:0140110,GO:1900428,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.positive regulation of Golgi to plasma membrane protein transport
EggNOG OGsKOG0279@1,KOG0279@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGuanine nucleotide-binding protein subunit beta-like
Ec32 orthologEc-01_000580.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927957.4239426-CDS-E-fasciculatus_F_contig14729:151..3041622927957.4239426-CDS-E-fasciculatus_F_contig14729:151..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14729 152..304 -
1695995766.6213636-CDS-E-fasciculatus_F_contig14729:151..3041695995766.6213636-CDS-E-fasciculatus_F_contig14729:151..304Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14729 152..304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14729.3383.1prot_E-fasciculatus_F_contig14729.3383.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14729 152..304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14729.3383.1

>prot_E-fasciculatus_F_contig14729.3383.1 ID=prot_E-fasciculatus_F_contig14729.3383.1|Name=mRNA_E-fasciculatus_F_contig14729.3383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=51bp
KQGHTEWVSCVRFSPSPSAPVIVSAGWDKLVKVWALSNCKLHTNLIGHTG
*
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mRNA from alignment at E-fasciculatus_F_contig14729:152..304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14729.3383.1 ID=mRNA_E-fasciculatus_F_contig14729.3383.1|Name=mRNA_E-fasciculatus_F_contig14729.3383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14729:152..304- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACAGGGTCACACGGAGTGGGTGTCGTGCGTGCGGTTCTCCCCGTCGCC
GTCCGCCCCCGTGATCGTGTCGGCGGGATGGGACAAGCTCGTCAAGGTCT
GGGCTCTGTCGAACTGCAAGCTGCACACCAACCTCATCGGCCACACCGGG
TGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14729:152..304-

>mRNA_E-fasciculatus_F_contig14729.3383.1 ID=mRNA_E-fasciculatus_F_contig14729.3383.1|Name=mRNA_E-fasciculatus_F_contig14729.3383.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14729:152..304- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAACAGGGTCACACGGAGTGGGTGTCGTGCGTGCGGTTCTCCCCGTCGCC
GTCCGCCCCCGTGATCGTGTCGGCGGGATGGGACAAGCTCGTCAAGGTCT
GGGCTCTGTCGAACTGCAAGCTGCACACCAACCTCATCGGCCACACCGGG
TGAAAACAGGGTCACACGGAGTGGGTGTCGTGCGTGCGGTTCTCCCCGTC
GCCGTCCGCCCCCGTGATCGTGTCGGCGGGATGGGACAAGCTCGTCAAGG
TCTGGGCTCTGTCGAACTGCAAGCTGCACACCAACCTCATCGGCCACACC
GGGTGA
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