mRNA_E-fasciculatus_F_contig14700.3374.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14700.3374.1
Unique NamemRNA_E-fasciculatus_F_contig14700.3374.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14700.3374.1 vs. uniprot
Match: D8LFA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA2_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.340e-30
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:   11 RNKSDRAVEKMKREAAARRKAEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGGSLPRVSGA 229
            RNKSDRAVEKMKREAAAR  AEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGG LPRVSGA
Sbjct:  946 RNKSDRAVEKMKREAAARXXAEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGGGLPRVSGA 1018
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BLAST of mRNA_E-fasciculatus_F_contig14700.3374.1 vs. uniprot
Match: A0A6H5KVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.410e-21
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 2 
Query:   71 AEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGGSLPRVSGA 229
            AEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGG LPRVSGA
Sbjct: 1016 AEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSSNGRGGGLPRVSGA 1068
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14700.3374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFA2_ECTSI7.340e-3095.89Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVD9_9PHAE4.410e-2198.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14700contigE-fasciculatus_F_contig14700:413..1085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D8LFA2
KEGG koko:K10352
KEGG Pathwayko04530,map04530
EggNOG OGs28IV4@1,2QR6T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14700.3374.1prot_E-fasciculatus_F_contig14700.3374.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14700 453..1062 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.3085537-UTR-E-fasciculatus_F_contig14700:412..4521622927955.3085537-UTR-E-fasciculatus_F_contig14700:412..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14700 413..452 +
1695995765.7447188-UTR-E-fasciculatus_F_contig14700:412..4521695995765.7447188-UTR-E-fasciculatus_F_contig14700:412..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14700 413..452 +
1622927955.4106314-UTR-E-fasciculatus_F_contig14700:1062..10851622927955.4106314-UTR-E-fasciculatus_F_contig14700:1062..1085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14700 1063..1085 +
1695995765.786512-UTR-E-fasciculatus_F_contig14700:1062..10851695995765.786512-UTR-E-fasciculatus_F_contig14700:1062..1085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14700 1063..1085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927955.3316705-CDS-E-fasciculatus_F_contig14700:452..5171622927955.3316705-CDS-E-fasciculatus_F_contig14700:452..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 453..517 +
1695995765.7565565-CDS-E-fasciculatus_F_contig14700:452..5171695995765.7565565-CDS-E-fasciculatus_F_contig14700:452..517Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 453..517 +
1622927955.3481462-CDS-E-fasciculatus_F_contig14700:697..8221622927955.3481462-CDS-E-fasciculatus_F_contig14700:697..822Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 698..822 +
1695995765.7666302-CDS-E-fasciculatus_F_contig14700:697..8221695995765.7666302-CDS-E-fasciculatus_F_contig14700:697..822Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 698..822 +
1622927955.3728547-CDS-E-fasciculatus_F_contig14700:1036..10621622927955.3728547-CDS-E-fasciculatus_F_contig14700:1036..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 1037..1062 +
1695995765.7766812-CDS-E-fasciculatus_F_contig14700:1036..10621695995765.7766812-CDS-E-fasciculatus_F_contig14700:1036..1062Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14700 1037..1062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14700.3374.1

>prot_E-fasciculatus_F_contig14700.3374.1 ID=prot_E-fasciculatus_F_contig14700.3374.1|Name=mRNA_E-fasciculatus_F_contig14700.3374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
MKREAAARRKAEKRARDREERRNKQMELGWAGRSGGFDARPTSKGSVHSS
NGRGGSLPRVSGADKNQTRPG*
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mRNA from alignment at E-fasciculatus_F_contig14700:413..1085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14700.3374.1 ID=mRNA_E-fasciculatus_F_contig14700.3374.1|Name=mRNA_E-fasciculatus_F_contig14700.3374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=673bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14700:413..1085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGGGGGTCGTAATAAGAGTGACAGGGCGGTAGAGAAGATGAAACGAG
AGGCTGCCGCGCGAAGGAAGGCGGAGAAACGAGCAAGGGATAGGGAGGAG
CGTAGGTGAGTGTACGTAAGAGAGAATAACACAATGATACACACTGAGTA
ACGGAAGCTATATATACGTGTCTCATGCTACGCTGCTCGGGATCAAGAAT
ATAACAAAGCCACTACTTCGTGTGACCCTCAAATTGCGTACGTGTGTTTT
CCTTGTTATCCTCTCCCGGGCCCGTTCATGACCAGAAATAAGCAGATGGA
GCTTGGTTGGGCTGGTCGAAGCGGGGGTTTCGACGCTCGTCCGACAAGCA
AGGGTTCCGTCCATAGCAGTAACGGCCGTGGTGGCAGCCTTCCACGAGTC
AGCGGAGCAGGTGATTTTACTCCTGTGACTCGTTGAATGTTTAGAAAGTT
GTGACAGTTGCTGGACGCACTAATCACCGACTTGACAGCTCCAAGTCTGA
GATGGCTCATTGTTCGTGTAGCGCAGTAGTGGTAGTGGGCTTGGACAATT
AGAGGTATTGCCCAGGACGAAAATCCGCCCTAACGTTTTGACTCCTCCTC
CCGCACGCGCTCAATCGCGATCAGACAAAAACCAAACACGACCAGGTTGA
GGTCGGCGTCAACAACAATCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14700:413..1085+

>mRNA_E-fasciculatus_F_contig14700.3374.1 ID=mRNA_E-fasciculatus_F_contig14700.3374.1|Name=mRNA_E-fasciculatus_F_contig14700.3374.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14700:413..1085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAACGAGAGGCTGCCGCGCGAAGGAAGGCGGAGAAACGAGCAAGGGA
TAGGGAGGAGCGTAGATGAAACGAGAGGCTGCCGCGCGAAGGAAGGCGGA
GAAACGAGCAAGGGATAGGGAGGAGCGTAGAAATAAGCAGATGGAGCTTG
GTTGGGCTGGTCGAAGCGGGGGTTTCGACGCTCGTCCGACAAGCAAGGGT
TCCGTCCATAGCAGTAACGGCCGTGGTGGCAGCCTTCCACGAGTCAGCGG
AGCAGAAATAAGCAGATGGAGCTTGGTTGGGCTGGTCGAAGCGGGGGTTT
CGACGCTCGTCCGACAAGCAAGGGTTCCGTCCATAGCAGTAACGGCCGTG
GTGGCAGCCTTCCACGAGTCAGCGGAGCAGACAAAAACCAAACACGACCA
GGTTGAACAAAAACCAAACACGACCAGGTTGA
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