mRNA_E-fasciculatus_F_contig147.3371.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig147.3371.1
Unique NamemRNA_E-fasciculatus_F_contig147.3371.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig147.3371.1 vs. uniprot
Match: A0A6H5JKE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 7.360e-125
Identity = 182/213 (85.45%), Postives = 194/213 (91.08%), Query Frame = 1 
Query:   19 MAPKAEWRLFVPIVDSRRAPAEARSVVSLVDHVDPDARTDVYLKADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETFEKVKLGDDATPAEVVEHLRKEAGEGGGGVSDELEALMSTPLEVTVNKSVRKTTVTAGEGKASFEVTAEVSVSFPEMPEAYPKNWTTFCVEGKLESIEAFLGGEGKPLVALFSLRGALQVGYPHFIQMLSTQ 657
            MAPKAEWRLFVP VD  R PAEAR + SLVDHVDPDARTDVY+KADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETF+K+KLGD ATP EV+EHLRK+AG+G G VS+ LEALMSTPLEVTV KSVRKTTVT  EGKASFEVT EVSVSFPEMPE YPKNWTTFCVEGK+ SIEAFLG +GKPLVAL SLRGALQVGYPHF+QM+STQ
Sbjct:    1 MAPKAEWRLFVPTVDFHRVPAEAREMSSLVDHVDPDARTDVYIKADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETFQKIKLGDGATPTEVIEHLRKQAGKGEGAVSEGLEALMSTPLEVTVKKSVRKTTVTTREGKASFEVT-EVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMISTQ 212
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BLAST of mRNA_E-fasciculatus_F_contig147.3371.1 vs. uniprot
Match: D7FLJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 6.680e-86
Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:   19 MAPKAEWRLFVPIVDSRRAPAEARSVVSLVDHVDPDARTDVYLKADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETFEKVKLGDDATPAEVVEHLRKEAGEGGGGVSDELEALMSTPLEVTVNKSVRKTTVTAGEGKASFEVT 462
            MAPKAEWRLFVPIVDS RAPAEAR++ SLVDHV PDARTDVY+KADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETF+KV LGDDATPAEV+EHLRKEAGEG GGVS+ELEALMSTPLEV V KSVRKTTVTAGE KASFEVT
Sbjct:    1 MAPKAEWRLFVPIVDSHRAPAEARNMSSLVDHVHPDARTDVYIKADADVGVKRRGGGGLEFKALKQRQTLGGGVGPGAAETFQKVMLGDDATPAEVIEHLRKEAGEGEGGVSEELEALMSTPLEVAVKKSVRKTTVTAGERKASFEVT 148
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig147.3371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKE3_9PHAE7.360e-12585.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ5_ECTSI6.680e-8690.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig147contigE-fasciculatus_F_contig147:13215..16299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000950.1
Exons4
Model size660
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig147.3371.1prot_E-fasciculatus_F_contig147.3371.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig147 13215..16281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.902603-CDS-E-fasciculatus_F_contig147:13214..134111622927953.902603-CDS-E-fasciculatus_F_contig147:13214..13411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 13215..13411 -
1695995765.0268087-CDS-E-fasciculatus_F_contig147:13214..134111695995765.0268087-CDS-E-fasciculatus_F_contig147:13214..13411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 13215..13411 -
1622927953.9149637-CDS-E-fasciculatus_F_contig147:14138..143311622927953.9149637-CDS-E-fasciculatus_F_contig147:14138..14331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 14139..14331 -
1695995765.0365727-CDS-E-fasciculatus_F_contig147:14138..143311695995765.0365727-CDS-E-fasciculatus_F_contig147:14138..14331Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 14139..14331 -
1622927953.9287283-CDS-E-fasciculatus_F_contig147:14630..147201622927953.9287283-CDS-E-fasciculatus_F_contig147:14630..14720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 14631..14720 -
1695995765.0543954-CDS-E-fasciculatus_F_contig147:14630..147201695995765.0543954-CDS-E-fasciculatus_F_contig147:14630..14720Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 14631..14720 -
1622927953.9410088-CDS-E-fasciculatus_F_contig147:16119..162811622927953.9410088-CDS-E-fasciculatus_F_contig147:16119..16281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 16120..16281 -
1695995765.0656765-CDS-E-fasciculatus_F_contig147:16119..162811695995765.0656765-CDS-E-fasciculatus_F_contig147:16119..16281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig147 16120..16281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.9533212-UTR-E-fasciculatus_F_contig147:16281..162991622927953.9533212-UTR-E-fasciculatus_F_contig147:16281..16299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig147 16282..16299 -
1695995765.0743232-UTR-E-fasciculatus_F_contig147:16281..162991695995765.0743232-UTR-E-fasciculatus_F_contig147:16281..16299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig147 16282..16299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig147.3371.1

>prot_E-fasciculatus_F_contig147.3371.1 ID=prot_E-fasciculatus_F_contig147.3371.1|Name=mRNA_E-fasciculatus_F_contig147.3371.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp
MAPKAEWRLFVPIVDSRRAPAEARSVVSLVDHVDPDARTDVYLKADADVG
VKRRGGGGLEFKALKQRQTLGGGVGPGAAETFEKVKLGDDATPAEVVEHL
RKEAGEGGGGVSDELEALMSTPLEVTVNKSVRKTTVTAGEGKASFEVTAE
VSVSFPEMPEAYPKNWTTFCVEGKLESIEAFLGGEGKPLVALFSLRGALQ
VGYPHFIQMLSTQ*
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mRNA from alignment at E-fasciculatus_F_contig147:13215..16299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig147.3371.1 ID=mRNA_E-fasciculatus_F_contig147.3371.1|Name=mRNA_E-fasciculatus_F_contig147.3371.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3085bp|location=Sequence derived from alignment at E-fasciculatus_F_contig147:13215..16299- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGATAATTTGCGTACCATGGCGCCGAAAGCCGAGTGGAGGCTCTTTGT
TCCCATCGTAGACTCCCGCCGAGCCCCTGCGGAAGCACGGAGCGTGGTCT
CCCTGGTCGATCACGTCGATCCCGATGCTCGAACAGACGTGTACCTCAAG
GCAGATGCTGATGTTGGTGTCAAGCGAAGGGTAAGCTTGTAGGTGTGCGA
TGGCAGATTGAGACTGAAGCATGCCAAGTCGAGGTGACAAGACAGCGTGA
GAGCGTGCGCCCTGGGGTGCTGTGGGGATAGACAACAACATTTGATCGTT
CTGGCGTCCGGACTAATCTGGACGTGAGCGGAAATTTCTCGCAGCACCAC
GGCACTGGCTTTATTCTTGTGATGCCTCTGGTGCTCAAACTGCAGGCAGC
AGTACACACGTACTAGACACAATGCCTTTGGTGCAGGTCTTGAATGTGCG
GAACGCAAAGGATTAGTGGACCGCCAGCTGGAACCGTGCGGTTTGTGCCG
ATTGATGGGCACGATGAATCTAAACTCCGGAAATTTTGCCTGCTGGGGGT
GTCGGGCGAAATTTTTTTATCCCCGCGGATCTGTGGCGCATGCCTACACG
TGCACAGCATTTGTAGAGTTGAGAGACTAGCAGTGGCCTACTATAATCGA
GATAGCCTTGTACATCAGTAGTCTGGCACGGACAGGGCCCCCATCTACAT
TTCCATAGCAGTACAGGCCAGGCTTCTTCAAAATGTTGTCTTGGCATTGG
TTTGGCCAACCGCCACAGGGGAAAGCCCCAGAAACGCCAACATGTACCAA
GGCGTCCTGTTATTGCAGACCTCCTGCTTTCACGCACAGCACTGCCAACT
ACGGTACGCTGCTACTGCGTATCTGTGCTGGTCTCTCTTCTTTCTTACAC
GGCAGTGCTGCAGGTGTGGTTCTCGTGGCTGGCGCCGGATGCATGTCTAG
CCTTTTGGTTTCCCAAAATTGCAGGGCCGGAGGTGGGCACAACCATCTCT
AGTCTTTTAATTCTGTCTGACAATTAACACTCCGAAGTACTGCTGTAGGA
AGAGACTGCTCTGCCGGTTTGTCTTGAGCGCGAAAACAAAGTGTGTCCCG
GTACAGAGCGAGCACAACGTTCGTTACCACAGTAGTGACATCCATATGTG
GGAATCGGCTTCGTTATTTACCTGTTATTTTCTTGGGTACAACAAGGCAT
GGATTTTTTGGGGACCGAAAGAGACTGCCGGCGTTGATGGTTGATGGTTC
ACGTGCGTCAGGGGTAAAAAACTTAATCAATACCAGGCGGATACAGAGTT
CCTCCGCGGGTAGACTAGACTGATCCTTCATTATTCGGAATGCAATTTTG
ACCGACTTCGAATGAGAACATCGACACTAAATAGCAGCAGCACGACAGTG
TAATCAAAGTGGGACCTTCGACGGAGGTGCTTTGTAGGGAGGATGTTATG
ACGACGAGAGGCGTTCTCGATGGACGTCCAGGTACAACCCATGAACTGTA
GTACGGCCGACGGACGTCGTTGCTCTTGGACACGTTCACTTTGCAATTTC
ACCATCAACAACAACAACAACATCGACAGGGAGGCGGAGGGCTGGAGTTC
AAGGCCTTGAAGCAGCGGCAGACGTTGGGCGGTGGGGTTGGTCCTGGGGC
AGCAGAAACGTTCGAGAAGGTACGTGTCTTGGTGGGTCCGATGGCGCTAC
CGCTGTGTCCGTGTAGACAAGTTCTGGAGCTCCTTGCGCCCCCTCAGCCC
GCGTTCGTGAACGAGCACTGATCGATGTTGCCGGCGTACCGTCCACCTTG
AGTCTTCCATTTTTCTCGCTCTCCTTTTCCGGCCTCCTCTTCAATGTCAA
GCGACCCCCACCAACGATGTGATCCCGGCGGTGGCGACGCGACTCCGTCC
CAGAGCACTTCTGCCCGTACTTGACTGTTTCCGTCGTTGTCGTTGCACAC
GGAAACCCCGCTGGAAAGGTCAAGCTCGGAGACGATGCGACTCCGGCTGA
GGTCGTTGAGCACCTCCGTAAGGAGGCGGGGGAGGGAGGGGGCGGGGTGT
CCGACGAGTTGGAGGCGTTGATGAGCACGCCCTTAGAGGTTACCGTGAAC
AAGTCGGTGCGGAAGACGACGGTGACGGCTGGGGAGGGGAAGGCGAGCTT
TGAAGTTACAGGTGTGTTGTGGGGTTGTTGTCGTCGCGGTCTCATCCTCA
CGCTGTGTTGGTCTCCGCTAGCTTAAGCACCATCACCATGTTCTAAAACC
CTAACCCTTAAGGTTTCATGTGTTCTTCTTGATTGTGCCCGAAGTCGACT
AGCAATGATGTCAATCCTTCACGGCTGCTGTAAGCTTGGCGTGTATTGCA
GAAGGTCATTGCATGAAATTGCAAAACTACACTCCGAGAGGCGGTTTTTG
CTGTCGTCTCCAGATCGTACCTTTGATTGCGTAAGATAACACACCCCCTA
AACCAACTCTCACGCAACAATGCTTTGGGTCTACCTTGGGTCAGTAAATG
CTCGATTCTTTCACGAGGAGCAGGATGCCAAAATCGAAGTGTTCCTTGTT
GCAAGGCTCTCGGCGAGATGGTTACGACGCCTCCAGTTTCGGCACAATCA
AAATGTTCTTGCTGCTGAGTAATTGAGCTTGAACAAAGTCAAGTGTGCAT
GGAATCTTAATTGTTTTCGCAATCTACGGTACATCATGCACAGGTAACGA
CCTGTAGTCATTGAATGTTGAAACAACAGAACGTGCCCAAACCTTCCTGC
CGTCTACCTATCGCGTTAAACTCCGCGTGTGTTTATCCCGCACCTCTGAG
ATGAGGTGCATCAAGCCGGCGCGATCATTATCCAACCCGTGGTGACCTCG
CCCCCCCCCCATGCCGCATCGACAACTCAAAATGCGAGCAGAGGTGTCGG
TGAGCTTTCCCGAGATGCCGGAGGCGTACCCCAAGAACTGGACCACGTTC
TGCGTGGAGGGGAAATTGGAAAGCATAGAGGCGTTCTTGGGGGGCGAGGG
GAAGCCCCTTGTGGCCCTGTTCTCGCTCAGGGGGGCGCTGCAGGTCGGAT
ACCCGCACTTTATTCAGATGCTTTCGACGCAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig147:13215..16299-

>mRNA_E-fasciculatus_F_contig147.3371.1 ID=mRNA_E-fasciculatus_F_contig147.3371.1|Name=mRNA_E-fasciculatus_F_contig147.3371.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig147:13215..16299- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCCGAAAGCCGAGTGGAGGCTCTTTGTTCCCATCGTAGACTCCCG
CCGAGCCCCTGCGGAAGCACGGAGCGTGGTCTCCCTGGTCGATCACGTCG
ATCCCGATGCTCGAACAGACGTGTACCTCAAGGCAGATGCTGATGTTGGT
GTCAAGCGAAGGATGGCGCCGAAAGCCGAGTGGAGGCTCTTTGTTCCCAT
CGTAGACTCCCGCCGAGCCCCTGCGGAAGCACGGAGCGTGGTCTCCCTGG
TCGATCACGTCGATCCCGATGCTCGAACAGACGTGTACCTCAAGGCAGAT
GCTGATGTTGGTGTCAAGCGAAGGGGAGGCGGAGGGCTGGAGTTCAAGGC
CTTGAAGCAGCGGCAGACGTTGGGCGGTGGGGTTGGTCCTGGGGCAGCAG
AAACGTTCGAGAAGGGAGGCGGAGGGCTGGAGTTCAAGGCCTTGAAGCAG
CGGCAGACGTTGGGCGGTGGGGTTGGTCCTGGGGCAGCAGAAACGTTCGA
GAAGGTCAAGCTCGGAGACGATGCGACTCCGGCTGAGGTCGTTGAGCACC
TCCGTAAGGAGGCGGGGGAGGGAGGGGGCGGGGTGTCCGACGAGTTGGAG
GCGTTGATGAGCACGCCCTTAGAGGTTACCGTGAACAAGTCGGTGCGGAA
GACGACGGTGACGGCTGGGGAGGGGAAGGCGAGCTTTGAAGTTACAGGTC
AAGCTCGGAGACGATGCGACTCCGGCTGAGGTCGTTGAGCACCTCCGTAA
GGAGGCGGGGGAGGGAGGGGGCGGGGTGTCCGACGAGTTGGAGGCGTTGA
TGAGCACGCCCTTAGAGGTTACCGTGAACAAGTCGGTGCGGAAGACGACG
GTGACGGCTGGGGAGGGGAAGGCGAGCTTTGAAGTTACAGCAGAGGTGTC
GGTGAGCTTTCCCGAGATGCCGGAGGCGTACCCCAAGAACTGGACCACGT
TCTGCGTGGAGGGGAAATTGGAAAGCATAGAGGCGTTCTTGGGGGGCGAG
GGGAAGCCCCTTGTGGCCCTGTTCTCGCTCAGGGGGGCGCTGCAGGTCGG
ATACCCGCACTTTATTCAGATGCTTTCGACGCAGTGACAGAGGTGTCGGT
GAGCTTTCCCGAGATGCCGGAGGCGTACCCCAAGAACTGGACCACGTTCT
GCGTGGAGGGGAAATTGGAAAGCATAGAGGCGTTCTTGGGGGGCGAGGGG
AAGCCCCTTGTGGCCCTGTTCTCGCTCAGGGGGGCGCTGCAGGTCGGATA
CCCGCACTTTATTCAGATGCTTTCGACGCAGTGA
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