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Homology
BLAST of mRNA_E-fasciculatus_F_contig147.3370.1 vs. uniprot
Match: D7FLJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 4.490e-18 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1
Query: 340 MRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEDFNQDLRWVL 483
+RLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLE FNQDLRWVL
Sbjct: 16 VRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEGFNQDLRWVL 63
BLAST of mRNA_E-fasciculatus_F_contig147.3370.1 vs. uniprot
Match: A0A6H5JK24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK24_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.840e-17 Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1
Query: 340 MRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEDFNQDLRWVL 483
+RLARYQRVLHVVWAALGVSIQRIVSWPGG RLTFLEDF+QDLRWVL
Sbjct: 16 VRLARYQRVLHVVWAALGVSIQRIVSWPGGEGRLTFLEDFDQDLRWVL 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2379 |
| Cds size | 1443 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig147.3370.1 >prot_E-fasciculatus_F_contig147.3370.1 ID=prot_E-fasciculatus_F_contig147.3370.1|Name=mRNA_E-fasciculatus_F_contig147.3370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=481bp
MPPSLSSLFFDTPHVTTAGQHKKYFVGRHGNTATINITAATPTTRSGILS VTPATSPELPMRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEDF NQDLRWVLWPEGLRELTFREGFNQPIEDVVFPKGLERLSLGADFNQNIQN ASFPPALTFLSLGASFNHPLEGAELPKSLTTLVWGQLFDQPVEKVRWPPA LQSIAFGDAFNNPVEQAEFPARVESLQLGKAFDQQVERVAWPQRLESLSF GHDFNHPVAEMSWPEAVKEVSFGYSFDKPLSGVRWPPYLESVIFGFRFNK SLDNVTWPALCRSIQLGESFNLPLGGVSWPQGLLELDLGDDFNHPLEGVT LPAGLERLYLSVFFNQPVVAVKWPEGLLELDFGLNFNMPIEGTSFPRGLQ SVCFGRCFNQDVTRVSWPEELTRIAFGRAFVGALDGDSWPPPKLEVLDLG SKFHAKHRIDEANLRQGCQVFYLYVPGSDY* back to topmRNA from alignment at E-fasciculatus_F_contig147:6336..10687+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig147.3370.1 ID=mRNA_E-fasciculatus_F_contig147.3370.1|Name=mRNA_E-fasciculatus_F_contig147.3370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4352bp|location=Sequence derived from alignment at E-fasciculatus_F_contig147:6336..10687+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TCTCTAAATCCACCTTCGCCCACAATAACGTCACTAGCGGCGCTTCAGCT
GGCCTTCACTTCTGGATACGAGGGTCATCAACAGCCGCAGCTGGTATCTC
TCGACCTCTGCAATGCCTGTCGCGAATCGGTGGCCATCCGTTTACGTCTC
ACAGACCGCATGCCGCCGTCCCTCAGCTCCTTGTTCTTCGACACTCCACA
CGTGACGACTGCAGGGCAGCATAAGAAATACTTCGTCGGCAGACATGGCA
ACACCGCCACCATCAACATCACCGCCGCCACCCCCACCACCAGGAGCGGA
ATACTTTCTGTCACGCCTGCCACTTCGCCAGAACTACCGATGCGGCTTGC
GAGGTACCAAAGGGTGTTGCACGTTGTGTGGGCGGCTCTGGGCGTATCGA
TTCAACGCATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTG
GAGGACTTCAATCAAGACCTACGGTGGGTGCTATGGCCCGAGGGACTGCG
CGAGCTGACCTTTCGAGAGGGGTTCAACCAGCCCATTGAAGATGTGGTCT
TTCCAAAGGGCCTGGAGAGGCTATCCCTTGGTGCGGATTTCAACCAGAAT
ATACAAAATGCGTCGTTCCCTCCTGCATTAACGTTCCTGTCCCTAGGAGC
GTCTTTCAACCATCCTCTCGAGGGAGCTGAGCTCCCGAAGTCGCTAACAA
CACTCGTGTGGGGACAGCTGTTCGATCAGCCCGTTGAAAAGGTGCGCTGG
CCGCCGGCGTTGCAGAGCATCGCCTTCGGGGATGCGTTCAATAACCCCGT
CGAGCAGGCTGAGTTTCCGGCCCGAGTGGAGTCCCTTCAGCTTGGAAAAG
CATTCGATCAGCAGGTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGC
CTGTCATTCGGACATGACTTTAACCACCCGGTGGCGGAGATGTCATGGCC
GGAGGCCGTGAAAGAGGTGCGTGTTCTCTAGAAGTGGCGCCTATCTTATG
ATAGCGACTCGTCTATATCGCACACGAGTGCTACGCGGGTTTTTCAATGC
CGCAGCACACAGGTACTTCGTTTCGTGTGTAGGACGGCGGCCTTTCAATG
TGCTTGGACTTGATGCCTCTGCCGCTACAATGCACAAGGACTCACAGTAT
CGCCACAGTCTCGGGAGTTTTGTGGATTTTTGCGTGGGCCGCCCACGGGT
ATACCTAAGAGCTGCCCATGGAATATTAGTACCCATTGGTGGCAGATAGA
ACCAAACATTCCTACTACATGTATGTGTAGTCCATTCACCCCACGACTCA
GACGGCACGCCTACACGCCTTACATTCTTTACATGTAAGCAAAGGAAATC
AAATTGTCAATCGGTTGCAGTCAGCTCGCCGAAGCTCAATCGTTCAGTTG
ATGAAACGGGCGTGCATCGACCGGTAACTACGTTTACCCCGCACTAAGAA
CCTTGTCGCGTAGCGTAGAAGACAATTGACCGGAAGCAGCGGTCCCACAA
TGATACAGGTATACACGCCGCAGCCACGAGTCAGCGGCGGCGGCGGCGCC
CATCACAAAAACGGCAACAACTATACGACACCGTTCAACCGTAACCCACG
ACGAAGAACACGCTGCCAAACGTTAGGTCCTTACGAATGATTCACGAAAG
TCGTTTGTCGCGGCGGCTCCTACTCACAATGCCAAGGTTTCTTTCGGGTA
CAGCTTTGACAAACCGTTGTCGGGAGTAAGGTGGCCGCCTTACCTTGAGA
GCGTCATTTTCGGCTTCCGCTTCAACAAGTCCCTCGACAACGTCACGTGG
CCCGCGCTCTGCCGCTCCATTCAGCTTGGAGAGTCCTTCAACCTTCCTTT
GGGCGGCGTAAGGTATGGCGACCAACAGACCGTCAAGCAGCTGTTAGTTA
GGCAAATTGTACAGCCGCTACTCCGCACCATGTGGTATCGCAACCAGACG
GCGTAAGCCAAGGGTATTGAAAGCTATGGGGGCGGAAATCACAACAGCCT
CGACGCGACCATCCTGAGCGGCTCCCCTAGAGACACTGGCTAGGTTACTC
GAGACCCTCGCCAGTCACCTCTACTTCCGCCAAAAAATGCAACCGTGCCG
CGGTAATAACAGACAAGCGTGCACTATCGAACATGGCCGTCAGACTCCCC
CCCCTTTAGCTTGCCCCTGGTGGCGGAAGATACTGAACGTCGCTGCTTGC
GGGTGTCCCAACAACGAGAGAGGTGTTAACCACGAAAGTAGAAAAGTAAG
TTCGAGGTCGAGACACGCAACCAACTAGCCTTAAAGCACGTCAAGTAGCC
ACCCCCATGCAAAACATGGCCGGTGTTTCTATCGTCGTGACGGTTTTATA
TGGCCATCCTTCAAATGGTACGGCAGGCACGGAAAGAAAAAAAACAAGAA
CGTACAACGGAACCCTGCGTTTATCCCATTTTGGTCTTGCACCGAAACAA
GTTGGCCGCAGGGGCTGCTCGAGTTGGACCTGGGGGACGACTTCAACCAC
CCCTTGGAAGGCGTTACTCTGCCAGCGGGGCTGGAACGGCTCTACCTCTC
GGTACGCCTGCTTTCATCGTACACAGCGTGTTTATTGGCAGCCATGGCCT
GGGGGCAGGTCACTGCTGCTGTTGCTGTTGATACTGTCGCAGCTGTTGCT
GGTTGTACGGTCCGTTCTCGCGCACGTCACCAATACCTCATCGGAGTCAT
GTGCCCACATACGTGTGGCGGTTGGGGTATGGCTGGGAAAGCTCCGAGGT
CGCGTTTCTATTGCGAAAACGCCATTTTTTTGCCGAATTCTGGTCGTTTT
TTCCTTGTTCGATGAAGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTAAG
TGGCCCGAAGGACTGCTCGAGCTTGATTTTGGGCTGAACTTCAACATGCC
AATCGAAGGAACGTCGTTTCCCCGGGGATTGCAGTCGGTGTGCTTCGGCC
GGTGCTTCAATCAGGACGTCACGCGCGTTTCGTGGCCGGAGGAATTGACT
CGGGTAAAACGTTGTTCTGTGGTTGTTGTTGTTGTGGTTGTTGTTATTGT
TGCTGCTGCTGCTCCTGCCTCTGTTAACGTGGACGTTGTAGTAGTTGATG
CTATCACAGCTCTTCTGGGTGGTGTTTGGGACACCACTTTTGTTCCGATC
GCAAAGCTAACCTGACCAGCCACCACTTACCAAAAGTTACCGCCAAGGCA
AGAGACACCCCTCAAAGCTTCGTTCTCAAAAAACGCGTGAGAGTCTCTCT
CCACGCACGGGCCTCTCCTCGATGGATGGTCCACATGGACTTGAGGAGAG
ACGCGTTTAATACAACGCAACCCACGAGCGTGCTGCCTGCACTACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCGCTCTATCGGAAACGCCAATCGATGTA
GATCGCCTTCGGACGAGCGTTCGTCGGGGCCCTTGATGGAGACTCCTGGC
CACCCCCGAAGCTGGAAGTATTGGACCTGGGCAGCAAGTTCCACGCGAAG
CACCGAATTGACGAGGCCAACCTTCGGCAAGGGTGTCAGGTGTTCTACCT
CTACGTTCCCGGCAGCGACTACTAGGTCGCGATCGTTGTTGCTGGTGTTG
CTATTGTTGTTTTTCCGTGTTGTTCTTGATCTTGGTGCTCTTGCCGTTGT
TGCAGTGGTTGTTGTTTTCGCTGTTGCTGTTGTTCAGAGAGTCCCATGTG
TCTCGCCTCGGGCAGCGGTGACTGTCGCTTGTAGACAAACCAAGCACGTG
AAGTGCCCCGTGTTCTTTGTTTTATGTTTAAGCCTGTTGACACAAGGTTG
CCCGAATACTACTGCGTGGCATGTAGGGGATGGATTTTCCCTTTCAGGAA
AAAACGATGGGAATTATTGGTAAAAACGCAATATGAGCATATATGTGCTG
TTTTCGTGGGGGTGGGGGGCGTCGGAAGGATACCAACTGCAGGAGGAAAC
CGCCGACTGTAGGGTTATTCCAGGCTTTTCGCCTCACGAAGTGCAGCCGC
AACAGGGCTCGGGATACCTCTACCTGCTTCAGACGTTTCGTTGAATTGAA
TTCGCGCCCTTCAGGTGGCGGCAGGTACCGGCGGGTTGCCCACAGGCAAA
GAAATATGCACCACAATGTGAACCATCTGCTATGCGTGCCGTCCATTGGG
AATGTCGGCGAGAGGCGTGGGGGTCCTCCGACGGATGTGGTCTTTCATAC
CGATTGGCTACATTGAATGGTCAAAAGGCTGGGTTTGTGAGTGCCAACTA
CATGATCATATTGAAGTTGGTAAGGGGTGAATTGGTCCGCTTTTAACATT
CCAAGAACAAGTCAGGGAAGTGGTCGGGGTAATATGCGGGGCGGTGTCTG
GG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig147:6336..10687+ >mRNA_E-fasciculatus_F_contig147.3370.1 ID=mRNA_E-fasciculatus_F_contig147.3370.1|Name=mRNA_E-fasciculatus_F_contig147.3370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2886bp|location=Sequence derived from alignment at E-fasciculatus_F_contig147:6336..10687+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCCGCCGTCCCTCAGCTCCTTGTTCTTCGACACTCCACACGTGACGAC TGCAGGGCAGCATAAGAAATACTTCGTCGGCAGACATGGCAACACCGCCA CCATCAACATCACCGCCGCCACCCCCACCACCAGGAGCGGAATACTTTCT GTCACGCCTGCCACTTCGCCAGAACTACCGATGCGGCTTGCGAGGTACCA AAGGGTGTTGCACGTTGTGTGGGCGGCTCTGGGCGTATCGATTCAACGCA TTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGGAGGACTTC AATCAAGACCTACGGTGGGTGCTATGGCCCGAGGGACTGCGCGAGCTGAC CTTTCGAGAGGGGTTCAACCAGCCCATTGAAGATGTGGTCTTTCCAAAGG GCCTGGAGAGGCTATCCCTTGGTGCGGATTTCAACCAGAATATACAAAAT GCGTCGTTCCCTCCTGCATTAACGTTCCTGTCCCTAGGAGCGTCTTTCAA CCATCCTCTCGAGGGAGCTGAGCTCCCGAAGTCGCTAACAACACTCGTGT GGGGACAGCTGTTCGATCAGCCCGTTGAAAAGGTGCGCTGGCCGCCGGCG TTGCAGAGCATCGCCTTCGGGGATGCGTTCAATAACCCCGTCGAGCAGGC TGAGTTTCCGGCCCGAGTGGAGTCCCTTCAGCTTGGAAAAGCATTCGATC AGCAGGTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGCCTGTCATTC GGACATGACTTTAACCACCCGGTGGCGGAGATGTCATGGCCGGAGGCCGT GAAAGAGATGCCGCCGTCCCTCAGCTCCTTGTTCTTCGACACTCCACACG TGACGACTGCAGGGCAGCATAAGAAATACTTCGTCGGCAGACATGGCAAC ACCGCCACCATCAACATCACCGCCGCCACCCCCACCACCAGGAGCGGAAT ACTTTCTGTCACGCCTGCCACTTCGCCAGAACTACCGATGCGGCTTGCGA GGTACCAAAGGGTGTTGCACGTTGTGTGGGCGGCTCTGGGCGTATCGATT CAACGCATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGGA GGACTTCAATCAAGACCTACGGTGGGTGCTATGGCCCGAGGGACTGCGCG AGCTGACCTTTCGAGAGGGGTTCAACCAGCCCATTGAAGATGTGGTCTTT CCAAAGGGCCTGGAGAGGCTATCCCTTGGTGCGGATTTCAACCAGAATAT ACAAAATGCGTCGTTCCCTCCTGCATTAACGTTCCTGTCCCTAGGAGCGT CTTTCAACCATCCTCTCGAGGGAGCTGAGCTCCCGAAGTCGCTAACAACA CTCGTGTGGGGACAGCTGTTCGATCAGCCCGTTGAAAAGGTGCGCTGGCC GCCGGCGTTGCAGAGCATCGCCTTCGGGGATGCGTTCAATAACCCCGTCG AGCAGGCTGAGTTTCCGGCCCGAGTGGAGTCCCTTCAGCTTGGAAAAGCA TTCGATCAGCAGGTTGAACGAGTGGCATGGCCTCAACGCCTAGAGAGCCT GTCATTCGGACATGACTTTAACCACCCGGTGGCGGAGATGTCATGGCCGG AGGCCGTGAAAGAGGTTTCTTTCGGGTACAGCTTTGACAAACCGTTGTCG GGAGTAAGGTGGCCGCCTTACCTTGAGAGCGTCATTTTCGGCTTCCGCTT CAACAAGTCCCTCGACAACGTCACGTGGCCCGCGCTCTGCCGCTCCATTC AGCTTGGAGAGTCCTTCAACCTTCCTTTGGGCGGCGTAAGGTTTCTTTCG GGTACAGCTTTGACAAACCGTTGTCGGGAGTAAGGTGGCCGCCTTACCTT GAGAGCGTCATTTTCGGCTTCCGCTTCAACAAGTCCCTCGACAACGTCAC GTGGCCCGCGCTCTGCCGCTCCATTCAGCTTGGAGAGTCCTTCAACCTTC CTTTGGGCGGCGTAAGTTGGCCGCAGGGGCTGCTCGAGTTGGACCTGGGG GACGACTTCAACCACCCCTTGGAAGGCGTTACTCTGCCAGCGGGGCTGGA ACGGCTCTACCTCTCGTTGGCCGCAGGGGCTGCTCGAGTTGGACCTGGGG GACGACTTCAACCACCCCTTGGAAGGCGTTACTCTGCCAGCGGGGCTGGA ACGGCTCTACCTCTCGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTAAGT GGCCCGAAGGACTGCTCGAGCTTGATTTTGGGCTGAACTTCAACATGCCA ATCGAAGGAACGTCGTTTCCCCGGGGATTGCAGTCGGTGTGCTTCGGCCG GTGCTTCAATCAGGACGTCACGCGCGTTTCGTGGCCGGAGGAATTGACTC GGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTAAGTGGCCCGAAGGACTG CTCGAGCTTGATTTTGGGCTGAACTTCAACATGCCAATCGAAGGAACGTC GTTTCCCCGGGGATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAATCAGG ACGTCACGCGCGTTTCGTGGCCGGAGGAATTGACTCGGATCGCCTTCGGA CGAGCGTTCGTCGGGGCCCTTGATGGAGACTCCTGGCCACCCCCGAAGCT GGAAGTATTGGACCTGGGCAGCAAGTTCCACGCGAAGCACCGAATTGACG AGGCCAACCTTCGGCAAGGGTGTCAGGTGTTCTACCTCTACGTTCCCGGC AGCGACTACTAGATCGCCTTCGGACGAGCGTTCGTCGGGGCCCTTGATGG AGACTCCTGGCCACCCCCGAAGCTGGAAGTATTGGACCTGGGCAGCAAGT TCCACGCGAAGCACCGAATTGACGAGGCCAACCTTCGGCAAGGGTGTCAG GTGTTCTACCTCTACGTTCCCGGCAGCGACTACTAG back to top
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