mRNA_E-fasciculatus_F_contig14698.3369.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14698.3369.1
Unique NamemRNA_E-fasciculatus_F_contig14698.3369.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14698.3369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14698contigE-fasciculatus_F_contig14698:75..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size523
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14698.3369.1prot_E-fasciculatus_F_contig14698.3369.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14698 175..477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.5629873-UTR-E-fasciculatus_F_contig14698:74..1741622927953.5629873-UTR-E-fasciculatus_F_contig14698:74..174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14698 75..174 +
1695995764.9048152-UTR-E-fasciculatus_F_contig14698:74..1741695995764.9048152-UTR-E-fasciculatus_F_contig14698:74..174Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14698 75..174 +
1622927953.7445374-UTR-E-fasciculatus_F_contig14698:477..5971622927953.7445374-UTR-E-fasciculatus_F_contig14698:477..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14698 478..597 +
1695995764.9262502-UTR-E-fasciculatus_F_contig14698:477..5971695995764.9262502-UTR-E-fasciculatus_F_contig14698:477..597Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14698 478..597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.575992-CDS-E-fasciculatus_F_contig14698:174..4771622927953.575992-CDS-E-fasciculatus_F_contig14698:174..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14698 175..477 +
1695995764.9142835-CDS-E-fasciculatus_F_contig14698:174..4771695995764.9142835-CDS-E-fasciculatus_F_contig14698:174..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14698 175..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14698.3369.1

>prot_E-fasciculatus_F_contig14698.3369.1 ID=prot_E-fasciculatus_F_contig14698.3369.1|Name=mRNA_E-fasciculatus_F_contig14698.3369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MVNRVQYSSWISISLSLTHTQTHTQTLALVLSPFHSLHLALSATIPIPGQ
YLTRKVKTLSFQIFIFEHADIFWLLPDHEPLLPSCAASTSTPDRFSLCLF
*
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mRNA from alignment at E-fasciculatus_F_contig14698:75..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14698.3369.1 ID=mRNA_E-fasciculatus_F_contig14698.3369.1|Name=mRNA_E-fasciculatus_F_contig14698.3369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=523bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14698:75..597+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGCAACGGTGGACACGCCTGGAACTAGGGAGGGCCTAAGCTCTAAGAG
CATCCCTCCGTGGCCTCGGGAGGCTGGTCGATTCACCTCCTTGCTTGGTG
ATGGTTAACAGAGTGCAATATTCCTCATGGATCTCCATATCTCTCTCTCT
CACACACACACAAACACACACACAAACCCTCGCTCTCGTTCTCTCACCCT
TTCACTCTCTTCATCTCGCTCTCTCTGCCACTATCCCTATCCCCGGTCAA
TATCTGACCAGGAAGGTAAAAACCCTATCTTTCCAAATATTTATCTTCGA
ACATGCAGATATCTTCTGGCTTCTTCCCGACCATGAACCGCTACTACCGA
GTTGCGCTGCATCCACAAGCACCCCCGACAGATTCTCCCTATGCCTATTC
TGAAGCTTTAGCTTCAGCTTCTCAGACCAATATCCGGGTTTCATTCGAGT
ACCCCACCCCTTGCCCGACCGCTGATCTCGACCTACAACGAAAATCTCGC
GCAGTCTCGAGTATGGTTCGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14698:75..597+

>mRNA_E-fasciculatus_F_contig14698.3369.1 ID=mRNA_E-fasciculatus_F_contig14698.3369.1|Name=mRNA_E-fasciculatus_F_contig14698.3369.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14698:75..597+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTAACAGAGTGCAATATTCCTCATGGATCTCCATATCTCTCTCTCT
CACACACACACAAACACACACACAAACCCTCGCTCTCGTTCTCTCACCCT
TTCACTCTCTTCATCTCGCTCTCTCTGCCACTATCCCTATCCCCGGTCAA
TATCTGACCAGGAAGGTAAAAACCCTATCTTTCCAAATATTTATCTTCGA
ACATGCAGATATCTTCTGGCTTCTTCCCGACCATGAACCGCTACTACCGA
GTTGCGCTGCATCCACAAGCACCCCCGACAGATTCTCCCTATGCCTATTC
TGAATGGTTAACAGAGTGCAATATTCCTCATGGATCTCCATATCTCTCTC
TCTCACACACACACAAACACACACACAAACCCTCGCTCTCGTTCTCTCAC
CCTTTCACTCTCTTCATCTCGCTCTCTCTGCCACTATCCCTATCCCCGGT
CAATATCTGACCAGGAAGGTAAAAACCCTATCTTTCCAAATATTTATCTT
CGAACATGCAGATATCTTCTGGCTTCTTCCCGACCATGAACCGCTACTAC
CGAGTTGCGCTGCATCCACAAGCACCCCCGACAGATTCTCCCTATGCCTA
TTCTGA
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