mRNA_E-fasciculatus_F_contig14697.3368.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14697.3368.1
Unique NamemRNA_E-fasciculatus_F_contig14697.3368.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14697.3368.1 vs. uniprot
Match: D7FYK0_ECTSI (SPX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK0_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 3.040e-74
Identity = 129/157 (82.17%), Postives = 132/157 (84.08%), Query Frame = 1 
Query:    1 RINNNTRKVAEFYRSREAWCFLALESTRGALFGLTRRASKDRLCLATQEPSAA-SPAVAXXXXXXXXXXXYGQSSGSSLEQDAAGELEGKFLEAKAGATVLLSESRGLVQFVDMNMHAFRKVLKKLDKWTSGVSGREYFTSLIQTHPWINGDRAHGV 468
            R+     KVAEFYRSREAWCFLALESTRGALFGLTRRASKDRLCLATQ P+AA SPAV             GQSSGS LEQD AGELEGKFLEAKAGATVLLSESR LVQFVDMNMHAFRK+LKKLDKWT GVSGREYFTSLIQTH WINGDRAHGV
Sbjct:   65 RLEIEKEKVAEFYRSREAWCFLALESTRGALFGLTRRASKDRLCLATQGPAAAASPAVGAGDSGTGN----GQSSGS-LEQDTAGELEGKFLEAKAGATVLLSESRDLVQFVDMNMHAFRKLLKKLDKWTGGVSGREYFTSLIQTHSWINGDRAHGV 216
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14697.3368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYK0_ECTSI3.040e-7482.17SPX domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14697contigE-fasciculatus_F_contig14697:1517..2859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size468
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14697.3368.1prot_E-fasciculatus_F_contig14697.3368.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14697 1517..2859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.4912724-CDS-E-fasciculatus_F_contig14697:1516..17821622927953.4912724-CDS-E-fasciculatus_F_contig14697:1516..1782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 1517..1782 +
1695995764.8715596-CDS-E-fasciculatus_F_contig14697:1516..17821695995764.8715596-CDS-E-fasciculatus_F_contig14697:1516..1782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 1517..1782 +
1622927953.5056298-CDS-E-fasciculatus_F_contig14697:2230..23201622927953.5056298-CDS-E-fasciculatus_F_contig14697:2230..2320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 2231..2320 +
1695995764.8815365-CDS-E-fasciculatus_F_contig14697:2230..23201695995764.8815365-CDS-E-fasciculatus_F_contig14697:2230..2320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 2231..2320 +
1622927953.5206616-CDS-E-fasciculatus_F_contig14697:2747..28591622927953.5206616-CDS-E-fasciculatus_F_contig14697:2747..2859Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 2748..2859 +
1695995764.894135-CDS-E-fasciculatus_F_contig14697:2747..28591695995764.894135-CDS-E-fasciculatus_F_contig14697:2747..2859Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14697 2748..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14697.3368.1

>prot_E-fasciculatus_F_contig14697.3368.1 ID=prot_E-fasciculatus_F_contig14697.3368.1|Name=mRNA_E-fasciculatus_F_contig14697.3368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=156bp
RINNNTRKVAEFYRSREAWCFLALESTRGALFGLTRRASKDRLCLATQEP
SAASPAVAGGDSSGGGGGGYGQSSGSSLEQDAAGELEGKFLEAKAGATVL
LSESRGLVQFVDMNMHAFRKVLKKLDKWTSGVSGREYFTSLIQTHPWING
DRAHGV
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mRNA from alignment at E-fasciculatus_F_contig14697:1517..2859+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14697.3368.1 ID=mRNA_E-fasciculatus_F_contig14697.3368.1|Name=mRNA_E-fasciculatus_F_contig14697.3368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1343bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14697:1517..2859+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTATAAACAACAACACACGAAAGGTTGCCGAGTTTTACCGCTCTAGGGA
GGCATGGTGCTTTCTAGCTCTCGAGTCGACGAGAGGCGCCTTGTTCGGCC
TAACGAGACGAGCGAGCAAGGACCGACTCTGTCTGGCGACCCAGGAACCT
TCGGCGGCTTCGCCGGCTGTTGCCGGCGGCGATAGCAGCGGCGGTGGCGG
CGGCGGCTACGGGCAGAGTTCTGGTTCCTCGCTGGAACAGGATGCCGCTG
GCGAGCTGGAGGGGAAGTGAGTCGCTCGCTGCACCGGCGACCATGGCCTG
ACCAGACATAGAAATGGGGGTTGGATGAACCAAGTGTTAATAGTAGTTGT
TGGGCCTGGCATCCACCTGTAGGGTAGCACGGTCTCTCATCTGCACGCCC
CCCCCCCCCCCCCCCCCCCCCCCACCCTTCTCCGTATGCCGCCCGAGTGG
ATGGTGGGTTGGGTGGGTGGCACACAGGCCGTAAGTAGCCTTGGCAAGGT
TTTTGTATTCACGGAAAATGTTGAATATGTTGAATACAGCATACGAATCG
GGGAAGTTGTGTCAAGGAATAGGGTCTGCGTACTCCTTCCTGTCGCACGT
CAATTCTCGCGAAGATGGTCTCGGTGGTTGTGGTTGCTGCTGTCATTGCT
TGAAGAGTTGACGGATGGCTCGAAATTTCTGCCCGTGTATTATTTTTTCC
TCGCCGCTCGGCAGGTTTCTAGAAGCCAAGGCCGGGGCCACGGTCCTTCT
GTCGGAGTCTCGGGGCCTGGTGCAGTTCGTGGACATGAACATGCACGCGT
TCCGGTAAGAGCCGGAGCACCGCCCATCAGGGAGCAGGGTGCTGTTATTG
GTTGACGGTGGGCGGAAGGCTGTCTGCTGGTTTATCTTTCTGTCCACACC
ACACCTTTCTTGCATCACTTGCTGCACTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGTCAGCCCGAATCGAAAGCCAAGCGGTACGTTCTTGCGAGAG
TGAGGTTGCCTCTACCGAAGGGCGAGCCTTACCTTCCCCTTTACCCTCAT
ATATGGCACTTTTTTCCGATTTCCGGCTTGGAAATGTGATGTACATGGTC
GGCTCGATTACGATCTCACATGAAAAACAAGGCGAGCTGCGACGTCCTAA
GAATGTTGTCCTACGTCTCAGGAGTGTGGCCCGCTGTCTCTTCTGTCTTT
GCTTTGCGGTTGTGTCACCTGGCGTTGGCAGAAAGGTCCTGAAAAAGCTT
GACAAGTGGACCAGCGGCGTGAGCGGGAGAGAGTACTTCACCTCCCTCAT
TCAGACACACCCTTGGATTAACGGCGATCGAGCGCACGGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14697:1517..2859+

>mRNA_E-fasciculatus_F_contig14697.3368.1 ID=mRNA_E-fasciculatus_F_contig14697.3368.1|Name=mRNA_E-fasciculatus_F_contig14697.3368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14697:1517..2859+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTATAAACAACAACACACGAAAGGTTGCCGAGTTTTACCGCTCTAGGGA
GGCATGGTGCTTTCTAGCTCTCGAGTCGACGAGAGGCGCCTTGTTCGGCC
TAACGAGACGAGCGAGCAAGGACCGACTCTGTCTGGCGACCCAGGAACCT
TCGGCGGCTTCGCCGGCTGTTGCCGGCGGCGATAGCAGCGGCGGTGGCGG
CGGCGGCTACGGGCAGAGTTCTGGTTCCTCGCTGGAACAGGATGCCGCTG
GCGAGCTGGAGGGGAACGTATAAACAACAACACACGAAAGGTTGCCGAGT
TTTACCGCTCTAGGGAGGCATGGTGCTTTCTAGCTCTCGAGTCGACGAGA
GGCGCCTTGTTCGGCCTAACGAGACGAGCGAGCAAGGACCGACTCTGTCT
GGCGACCCAGGAACCTTCGGCGGCTTCGCCGGCTGTTGCCGGCGGCGATA
GCAGCGGCGGTGGCGGCGGCGGCTACGGGCAGAGTTCTGGTTCCTCGCTG
GAACAGGATGCCGCTGGCGAGCTGGAGGGGAAGTTTCTAGAAGCCAAGGC
CGGGGCCACGGTCCTTCTGTCGGAGTCTCGGGGCCTGGTGCAGTTCGTGG
ACATGAACATGCACGCGTTCCGGTTTCTAGAAGCCAAGGCCGGGGCCACG
GTCCTTCTGTCGGAGTCTCGGGGCCTGGTGCAGTTCGTGGACATGAACAT
GCACGCGTTCCGAAAGGTCCTGAAAAAGCTTGACAAGTGGACCAGCGGCG
TGAGCGGGAGAGAGTACTTCACCTCCCTCATTCAGACACACCCTTGGATT
AACGGCGATCGAGCGCACGGGGTGAAAGGTCCTGAAAAAGCTTGACAAGT
GGACCAGCGGCGTGAGCGGGAGAGAGTACTTCACCTCCCTCATTCAGACA
CACCCTTGGATTAACGGCGATCGAGCGCACGGGGTG
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