mRNA_E-fasciculatus_F_contig14696.3367.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14696.3367.1
Unique NamemRNA_E-fasciculatus_F_contig14696.3367.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14696.3367.1 vs. uniprot
Match: D8LEJ3_ECTSI (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ3_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 2.680e-89
Identity = 271/333 (81.38%), Postives = 277/333 (83.18%), Query Frame = 1 
Query:   28 IRPVVDWLGAPDPEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSVRLTINSSGLDQKDDRDFIAAATTAGFPDNTAGLTLKRAEREEVAAAGQGAGPEPQRAEPTLAVPVYTEGGGGDWGLGFGREERGKIVCKQGDLLWKSVVGNLAKSTSWFVEEVGLSWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMRAAGAPPAFRHLRALCNYPEGRFSAWLERLVLDPSDDXXXXXXXXXXXXXXXXXXXPRPRPGRRLGGYDADDLPTSSLTTTSLAELGITYAAATWNTPR 1026
            IRPVVDWLGAPDPEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      S SVR T N SGLD+K  RD IAAATTAGFPD+   LTL+RA REEVAA GQGAGPEPQRAEPTLAVPVYTEG G      FGREER KIVCKQGDLLWKSVVGNLAKS SWFVEEVGLSW XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMRAAGAPPAFRHLRALCNYPE RFSAWLER+VLD  D                     RPRPGRRLGG DADD PTSSL+TTSLAELG+TYAAAT N PR
Sbjct:  309 IRPVVDWLGAPDPEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SASVRQTTNPSGLDRKSGRDRIAAATTAGFPDDAGELTLRRAAREEVAAVGQGAGPEPQRAEPTLAVPVYTEGVGXXXXXXFGREERRKIVCKQGDLLWKSVVGNLAKSASWFVEEVGLSWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMRAAGAPPAFRHLRALCNYPEDRFSAWLERIVLDADDSSSPATASSAVSPS-------RPRPGRRLGG-DADDPPTSSLSTTSLAELGLTYAAATMNAPR 627
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14696.3367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEJ3_ECTSI2.680e-8981.38Methyltranfer_dom domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14696contigE-fasciculatus_F_contig14696:423..3242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1238
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14696.3367.1prot_E-fasciculatus_F_contig14696.3367.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14696 1026..3129 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.3818748-UTR-E-fasciculatus_F_contig14696:422..10251622927953.3818748-UTR-E-fasciculatus_F_contig14696:422..1025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14696 423..1025 +
1695995764.825863-UTR-E-fasciculatus_F_contig14696:422..10251695995764.825863-UTR-E-fasciculatus_F_contig14696:422..1025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14696 423..1025 +
1622927953.4405222-UTR-E-fasciculatus_F_contig14696:3129..32421622927953.4405222-UTR-E-fasciculatus_F_contig14696:3129..3242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14696 3130..3242 +
1695995764.8609889-UTR-E-fasciculatus_F_contig14696:3129..32421695995764.8609889-UTR-E-fasciculatus_F_contig14696:3129..3242Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14696 3130..3242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.3960543-CDS-E-fasciculatus_F_contig14696:1025..10341622927953.3960543-CDS-E-fasciculatus_F_contig14696:1025..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 1026..1034 +
1695995764.8339036-CDS-E-fasciculatus_F_contig14696:1025..10341695995764.8339036-CDS-E-fasciculatus_F_contig14696:1025..1034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 1026..1034 +
1622927953.4100852-CDS-E-fasciculatus_F_contig14696:1365..14761622927953.4100852-CDS-E-fasciculatus_F_contig14696:1365..1476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 1366..1476 +
1695995764.84201-CDS-E-fasciculatus_F_contig14696:1365..14761695995764.84201-CDS-E-fasciculatus_F_contig14696:1365..1476Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 1366..1476 +
1622927953.4233658-CDS-E-fasciculatus_F_contig14696:2727..31291622927953.4233658-CDS-E-fasciculatus_F_contig14696:2727..3129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 2728..3129 +
1695995764.850728-CDS-E-fasciculatus_F_contig14696:2727..31291695995764.850728-CDS-E-fasciculatus_F_contig14696:2727..3129Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14696 2728..3129 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14696.3367.1

>prot_E-fasciculatus_F_contig14696.3367.1 ID=prot_E-fasciculatus_F_contig14696.3367.1|Name=mRNA_E-fasciculatus_F_contig14696.3367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
MRKVVERSPALLCLSVEHNLEPKLAFLVNELGLDPGSVRKAMRAAGAPPA
FRHLRALCNYPEGRFSAWLERLVLDPSDDSSSSSSPAATASSAAASSPPR
PRPGRRLGGYDADDLPTSSLTTTSLAELGITYAAATWNTPRRRRAAAAAT
GGASGEEAAEQREAFFFPPEERR*
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mRNA from alignment at E-fasciculatus_F_contig14696:423..3242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14696.3367.1 ID=mRNA_E-fasciculatus_F_contig14696.3367.1|Name=mRNA_E-fasciculatus_F_contig14696.3367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2820bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14696:423..3242+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTCTGCCTAAGCCTCGAGAAGAACATCCGGCCCGTCGTGGACTGGCT
TGGTGCCCCAGACCCCGAAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCACCCGGAGGGTTCACCGTCTTCTTCGGGAGCA
AGAAAGGAGACAAGCGCGCGCCCGTCTTCGTCGAGCTATTCCCCGCCGGC
TACCGCTGCGACGAGCGGCGGCAGCGGCGGCGGTTCGCCTAGCGTTAGAC
TAACGATAAACTCGTCCGGGTTGGACCAGAAAGATGACCGAGACTTCATC
GCTGCCGCCACCACCGCAGGATTCCCAGATAACACGGCAGGGTTGACGTT
AAAGAGGGCAGAGAGAGAAGAGGTTGCGGCGGCAGGGCAGGGGGCTGGCC
CGGAGCCGCAGCGGGCAGAGCCAACGCTGGCGGTGCCGGTGTACACGGAG
GGGGGTGGGGGGGACTGGGGGCTGGGGTTTGGCCGCGAGGAGCGGGGGAA
GATCGTTTGCAAGCAGGGGGACCTGTTGTGGAAAAGCGTCGTCGGCAATC
TCGCCAAGTCGACGTCTTGGTTCGTGGAGGAAGTCGGGCTGAGCTGGGAT
GAGATGCGCAAGGTGATCCGGTTTTTGTTTTATGGTTGGTGGGCCGCATC
GCTCTTCTTTTTTCTTTGTCGCTGCTTGAAAAAATAAGCCGCGCCGCCTG
CTTCATCTTGCATGGGGGTTATTGTTGTACACGAAAGCACTGCCACGGCT
TTAGCACGCACAAACAGTTGAATCAAGCTACAAGATTTATTGCTTTGGCT
GTCGCTGCACGGGTTTAGCAAGGGGCGTCCCGTGTTGTTGTCCCAGTTGC
GCCCGTTTCCCTCTAGACTTATCCCAACCTGGTTCTACCGCCCCTCGCCT
GCTCTCGTCCGTCGATGCACGGCTGGACCATGAACAAAACCAGGTAGTGG
AAAGGTCGCCGGCACTTCTGTGCCTAAGCGTGGAACACAACCTAGAGCCC
AAGCTAGCGTTCTTGGTTAACGAGCTCGGCTTGGACCCTGGATCTGTCAG
GAAGGTTTGTGCGACTTTGTCCTTGCGAATGGCGTCGTCTTCCTGTGATG
TTTCTTTTGCCGCTGGTCGCATCGTCCCTAAGTGTGCGGTGGCATGACAG
GGTTATTTTGTTTAATGTTGTTGCGGTGTTATCGTTGAGGCTGGTAGATT
TGTTTGTTTTGGCCGTGTTTTGCAGATAGTTCTTCCCCGAAGGTGAGCCG
GTTACTTCCGGCTTGGAGGCTTGTACGTGTCACTTGCGCGTGTATCTCTG
TGTCTGTCTCCCGTCTTCTTTCTGTCCGTCTTCTTTCTGCCCTCGTCTCA
TCGTCGGTCTCAACCCCGTTGGTTCATCTCTGCCGGTTTCACCTGTCTTG
GGTCTTCTGTCAACATCTACGCACCTCCCCGCTGAAAACATTCTTATTCG
ATACAAAATCCCATCTCTCAAACCATAATCCCACGCCTCCCAATTACCCA
CCTCTTTTTGCTCTCGTGCCTTGACCCCCCCCCCTGGGCCGACGAAAACC
CCGCATATCATTCCGTCCCGGGATGGTCTAACGGTTACAGCATGCGTTTA
CGTGCGTACCCCCCCCCCCCCCCCCCCCCCCTCCGCCCCCGGCATTTCCC
AGACAATTGTTAATCAGCCGTCGCTCATGACCCTGAGCGTTACCGGCAAC
CTCCGCCCGAAGGCAGCCTTCTTCCGGGACGAGCTGGGCGCCAACGAGGG
GGACATCGCCGACCTCCTCAACCAGTGCCCTCGGGTCATGAACGCCAGCG
TGGAGGGTCGGATACTGCCGAGAATGCAGGTTGACGGGTGTACATATATA
GCGGCTGCGCGTACCCGTGTAAGGAGCGCCTCGACCTTGGTCGAGTTTTG
ACCCAAAAGCGGGTCGACTTTTTAACGGCGCACTCTCGAAACGCTCTGCC
CATCCGATTATCGGCTTCGGCATCTAATCCTATCCTCGTCACACAGGCGT
TTGCTATTTGTGCGCGAATCCTTGGTTTCCTCAAACCATCGCAACCACGC
TAATATGTTTTTTTGCCCTGAGCACCCCCCCCCCACGGCTCGCTGACGTT
CTTGACACACGCAACCCCCCCCCGATCATCATTTTCCGGACCGCCTTCGA
GTATATTAAGATGTGTATGTGAAATATAAAGGGGGGGTGTCGTAACCCCA
GCCCTAACCCCTAACCAAGACCAAGCTTTTAAATCCTCGTGGAGTCCACC
GCCTTTTCCCTGCCCGCCAACGTCCTCCTACGCCCTTTCGACCGATCAAC
AACAGGCGATGCGGGCGGCGGGGGCCCCGCCGGCCTTCCGCCACCTCCGC
GCCCTCTGCAACTACCCGGAGGGCAGGTTCTCGGCCTGGTTGGAGAGACT
GGTCCTCGACCCCTCCGATGATTCTTCTTCTTCTTCTTCCCCGGCAGCAA
CGGCCTCCTCAGCAGCAGCTTCTTCTCCGCCGCGCCCGCGGCCAGGAAGG
CGGCTGGGCGGCTACGACGCCGACGACCTTCCGACATCCAGCCTGACCAC
CACCTCTCTGGCGGAGCTGGGCATAACATACGCCGCTGCGACTTGGAACA
CCCCGCGGCGGCGGCGAGCGGCAGCGGCGGCGACGGGAGGCGCGAGCGGC
GAAGAAGCGGCGGAACAGAGAGAGGCGTTTTTTTTTCCCCCGGAAGAGCG
GAGGTGAAGGCGCTGGTGCGAAAGCTGGCTCGCGGGCTGGACGTCCTCGA
CTTGATGTGCGGGACGGGGGGCTTCGCGCTCAACGCCGCTGCCGGGGGGG
CGCGGTCTGTGATAGGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14696:423..3242+

>mRNA_E-fasciculatus_F_contig14696.3367.1 ID=mRNA_E-fasciculatus_F_contig14696.3367.1|Name=mRNA_E-fasciculatus_F_contig14696.3367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14696:423..3242+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGCAAGATGCGCAAGGTAGTGGAAAGGTCGCCGGCACTTCTGTGCCT
AAGCGTGGAACACAACCTAGAGCCCAAGCTAGCGTTCTTGGTTAACGAGC
TCGGCTTGGACCCTGGATCTGTCAGGAAGGTAGTGGAAAGGTCGCCGGCA
CTTCTGTGCCTAAGCGTGGAACACAACCTAGAGCCCAAGCTAGCGTTCTT
GGTTAACGAGCTCGGCTTGGACCCTGGATCTGTCAGGAAGGCGATGCGGG
CGGCGGGGGCCCCGCCGGCCTTCCGCCACCTCCGCGCCCTCTGCAACTAC
CCGGAGGGCAGGTTCTCGGCCTGGTTGGAGAGACTGGTCCTCGACCCCTC
CGATGATTCTTCTTCTTCTTCTTCCCCGGCAGCAACGGCCTCCTCAGCAG
CAGCTTCTTCTCCGCCGCGCCCGCGGCCAGGAAGGCGGCTGGGCGGCTAC
GACGCCGACGACCTTCCGACATCCAGCCTGACCACCACCTCTCTGGCGGA
GCTGGGCATAACATACGCCGCTGCGACTTGGAACACCCCGCGGCGGCGGC
GAGCGGCAGCGGCGGCGACGGGAGGCGCGAGCGGCGAAGAAGCGGCGGAA
CAGAGAGAGGCGTTTTTTTTTCCCCCGGAAGAGCGGAGGTGAGCGATGCG
GGCGGCGGGGGCCCCGCCGGCCTTCCGCCACCTCCGCGCCCTCTGCAACT
ACCCGGAGGGCAGGTTCTCGGCCTGGTTGGAGAGACTGGTCCTCGACCCC
TCCGATGATTCTTCTTCTTCTTCTTCCCCGGCAGCAACGGCCTCCTCAGC
AGCAGCTTCTTCTCCGCCGCGCCCGCGGCCAGGAAGGCGGCTGGGCGGCT
ACGACGCCGACGACCTTCCGACATCCAGCCTGACCACCACCTCTCTGGCG
GAGCTGGGCATAACATACGCCGCTGCGACTTGGAACACCCCGCGGCGGCG
GCGAGCGGCAGCGGCGGCGACGGGAGGCGCGAGCGGCGAAGAAGCGGCGG
AACAGAGAGAGGCGTTTTTTTTTCCCCCGGAAGAGCGGAGGTGA
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