mRNA_E-fasciculatus_F_contig14693.3366.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14693.3366.1
Unique NamemRNA_E-fasciculatus_F_contig14693.3366.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: D7FP62_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP62_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.190e-64
Identity = 98/101 (97.03%), Postives = 100/101 (99.01%), Query Frame = 1 
Query:   19 QDSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            +DSLTTASGLKINKLV+G GPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR
Sbjct:   87 EDSLTTASGLKINKLVQGKGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 187
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A835ZAW5_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAW5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.380e-37
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:   22 DSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            + +TTASGLKI KL +G G     GDL  VRFKG Y  +EFDNIF+T EP Y+RAG G LVKG++EA++MMR+GD+W+LT P  L FG KGR PSPG+PR
Sbjct:   67 EEITTASGLKIKKLAEGKGEQCAAGDLAAVRFKGRYKDFEFDNIFDTEEPLYVRAGGGFLVKGLDEAMVMMRIGDRWELTIPGALGFGEKGRSPSPGKPR 166
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A0G4ED53_VITBC (Peptidylprolyl isomerase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED53_VITBC)

HSP 1 Score: 115 bits (287), Expect = 1.960e-30
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   19 QDSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            +D   T SGL  + L  G GP  E GDL+ +RF+G Y     D++F T+EPYY RA  G LV G+EEALLMMRVGD+W+L  P  LAFG +GR P+PGRPR
Sbjct:   25 EDWKETDSGLAYSVLKSGEGPKVEAGDLVVIRFRGQYKNIVIDDLFRTSEPYYARAAGGKLVAGLEEALLMMRVGDRWKLKVPGALAFGQQGRSPAPGRPR 125
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7S1E780_9STRA (Peptidylprolyl isomerase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E780_9STRA)

HSP 1 Score: 112 bits (279), Expect = 5.930e-29
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:   22 DSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            +++TT+SG+    L  G GP  ++G+L  +RF    G  + D+IF+T EPYY R G G+L+KGVEE L  MRVGD+W LT P NLAFG KGRP S G+PR
Sbjct:   58 ETVTTSSGVSYEILKSGNGPKPDRGELAAIRFAAYAGKNKIDDIFDTPEPYYTRVGSGSLIKGVEEILPSMRVGDRWSLTVPGNLAFGPKGRPASAGKPR 157
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7R9U1I7_9STRA (Peptidylprolyl isomerase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1I7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.420e-27
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   31 TTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRP 318
            TT SGL+   L  G G  AE GD++ VRF G Y  Y  DN+ N  +PY+ R G GTL+ GVEEA+ MM+VGD+WQLT P  LAFG +G+  SPG+P
Sbjct:  135 TTESGLEYTVLQAGNGAAAEPGDIVCVRFLGKYKDYIIDNLMNAPQPYFYRVGSGTLLPGVEEAIKMMKVGDRWQLTLPGKLAFGQQGKRASPGKP 230
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A6U5L432_9STRA (Peptidylprolyl isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5L432_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.070e-27
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:   73 TGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            +GP  + G+L  +RFK NYG  + D+IF++ EPYY R G G ++KGVEE L MM+VGD+W LT P+ LAFG KGRP S G+PR
Sbjct:    1 SGPAPDLGELAAIRFKANYGEMKIDDIFDSPEPYYTRVGSGGMIKGVEEVLPMMKVGDRWTLTIPSQLAFGPKGRPASAGKPR 83
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7S2U7U7_9STRA (Peptidylprolyl isomerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7U7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.880e-27
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:   31 TTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            T  SG+ +  + KG GP+ + G+L  +RF+   G  + D+IF+T EPYY R G G L+KGV++ L  MRVGD+W+LT P NLAFG KGRP S G+PR
Sbjct:  124 TLPSGVDVKVIKKGDGPIPDIGELAAIRFRAFAGANKIDDIFDTPEPYYTRIGNGGLIKGVQDVLPTMRVGDRWELTIPGNLAFGPKGRPASAGKPR 220
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7S4I2W1_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I2W1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.390e-26
Identity = 51/97 (52.58%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   31 TTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            TT SG+ I+ +  G GP    G++  +RFK   G    D+IFNT EPYY R G G L+KG EE +  MRVGD+W LT P +LAFG KGRP S G+PR
Sbjct:   70 TTPSGVVIDVVKSGDGPSPSVGEMAAIRFKATIGGNVIDDIFNTPEPYYTRVGSGGLIKGAEEVIPKMRVGDRWVLTVPGDLAFGKKGRPASAGKPR 166
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7S0AN93_9STRA (Peptidylprolyl isomerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AN93_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.790e-26
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:   22 DSLTTASGLKINKLVKGTGPVAEQGDLIGVRFK------GNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            + +T  SG+K   +  G GPV   G+L G+RFK      GN    + D+IF+T EPYY R G G L+KGVEE L  MRVGD+W +T P NLAFG+KGRP S G+PR
Sbjct:   65 EDVTLPSGVKYEVVKAGNGPVPTVGELAGIRFKAFVKENGN----KIDDIFDTPEPYYTRVGSGGLIKGVEEVLPKMRVGDRWIITVPGNLAFGSKGRPASAGKPR 166
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BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Match: A0A7S2IBW6_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IBW6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.860e-26
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    4 PARTQQDSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDNIFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRPPSPGRPR 321
            PA    + +T  SG+       G GP+   G+L  +RFK   G  + D+I++T EPYY R G G ++KGVEE + MMRVGD+W LT P  LAFG KGRP S G+PR
Sbjct:   62 PAFADDEVITLPSGVSYTVTKAGDGPIPTIGELCAIRFKAFAGQNKIDDIYDTPEPYYTRVGSGGMIKGVEEVIPMMRVGDRWVLTVPGKLAFGPKGRPASAGKPR 167
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14693.3366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP62_ECTSI1.190e-6497.03Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835ZAW5_9STRA4.380e-3762.00Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A0G4ED53_VITBC1.960e-3055.45Peptidylprolyl isomerase n=1 Tax=Vitrella brassica... [more]
A0A7S1E780_9STRA5.930e-2953.00Peptidylprolyl isomerase n=1 Tax=Thalassionema nit... [more]
A0A7R9U1I7_9STRA1.420e-2754.17Peptidylprolyl isomerase n=2 Tax=Pinguiococcus pyr... [more]
A0A6U5L432_9STRA2.070e-2756.63Peptidylprolyl isomerase n=1 Tax=Grammatophora oce... [more]
A0A7S2U7U7_9STRA4.880e-2751.55Peptidylprolyl isomerase (Fragment) n=1 Tax=Atthey... [more]
A0A7S4I2W1_9STRA1.390e-2652.58Peptidylprolyl isomerase n=1 Tax=Odontella aurita ... [more]
A0A7S0AN93_9STRA2.790e-2651.89Peptidylprolyl isomerase n=1 Tax=Minutocellus poly... [more]
A0A7S2IBW6_9STRA2.860e-2648.11Peptidylprolyl isomerase n=1 Tax=Helicotheca tames... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14693contigE-fasciculatus_F_contig14693:820..1562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.5
Seed ortholog evalue2.5e-50
Seed eggNOG ortholog2880.D7FP62
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-08_000710.1
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927953.3226063-CDS-E-fasciculatus_F_contig14693:819..9361622927953.3226063-CDS-E-fasciculatus_F_contig14693:819..936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14693 820..936 -
1695995764.8022604-CDS-E-fasciculatus_F_contig14693:819..9361695995764.8022604-CDS-E-fasciculatus_F_contig14693:819..936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14693 820..936 -
1622927953.3393354-CDS-E-fasciculatus_F_contig14693:1355..15621622927953.3393354-CDS-E-fasciculatus_F_contig14693:1355..1562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14693 1356..1562 -
1695995764.816768-CDS-E-fasciculatus_F_contig14693:1355..15621695995764.816768-CDS-E-fasciculatus_F_contig14693:1355..1562Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14693 1356..1562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14693.3366.1prot_E-fasciculatus_F_contig14693.3366.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14693 820..1562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14693.3366.1

>prot_E-fasciculatus_F_contig14693.3366.1 ID=prot_E-fasciculatus_F_contig14693.3366.1|Name=mRNA_E-fasciculatus_F_contig14693.3366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
PPARTQQDSLTTASGLKINKLVKGTGPVAEQGDLIGVRFKGNYGTYEFDN
IFNTAEPYYMRAGVGTLVKGVEEALLMMRVGDKWQLTCPANLAFGNKGRP
PSPGRPR*
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mRNA from alignment at E-fasciculatus_F_contig14693:820..1562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14693.3366.1 ID=mRNA_E-fasciculatus_F_contig14693.3366.1|Name=mRNA_E-fasciculatus_F_contig14693.3366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=743bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14693:820..1562- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCCTGCTCGGACGCAACAGGACTCCTTGACGACGGCGAGTGGCCTCAA
GATCAACAAGTTGGTGAAGGGTACCGGTCCCGTGGCGGAGCAAGGCGACC
TCATCGGTGTCCGTTTCAAGGGCAACTACGGCACCTACGAGTTCGACAAC
ATCTTCAACACGGCGGAGCCCTACTACATGCGCGCGGGGGTCGGGACGCT
CGTCAAGGTAAGGAGAAAAATTCAGCTTGTTTACCCACAGGGGTGATACC
GCGGTTTGCTGCTCGGGAAACCGTAGGAAGTACAATGCTAGCAGTTAATT
GCTGACGTAAACGAACCCTTTGCTGTGGAACGAGGTGGATTTCGTTGTGT
TTGTTGTAAGACACGTTAAAAAGAAGCTCGGGGGGGGCGTAGAAGTACAC
GTTGATCATCATTCGACGCTATGGTTTCATGGATGTTCTTTCCCAGGCAA
CGCTATGGTTTCAGTGCTATTCTATCCCACGCTGTCTATCTGCGGAAGAG
ATCAATTTGCGGTGTTTTTGCATGAGTGACAAAAAACATAAGAAACATGT
TGGTAGAGGTCTTGCCAGCGATGATGTGACGATGTTTCTGTTGACTGTCC
TGTTTCTCGTGCGTGTGCGTGAAAAGGGCGTGGAGGAGGCGTTGTTAATG
ATGAGAGTGGGCGACAAGTGGCAGCTCACGTGCCCGGCTAACCTCGCCTT
CGGGAACAAGGGCCGCCCACCGAGCCCCGGAAGGCCGAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14693:820..1562-

>mRNA_E-fasciculatus_F_contig14693.3366.1 ID=mRNA_E-fasciculatus_F_contig14693.3366.1|Name=mRNA_E-fasciculatus_F_contig14693.3366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14693:820..1562- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCCTGCTCGGACGCAACAGGACTCCTTGACGACGGCGAGTGGCCTCAA
GATCAACAAGTTGGTGAAGGGTACCGGTCCCGTGGCGGAGCAAGGCGACC
TCATCGGTGTCCGTTTCAAGGGCAACTACGGCACCTACGAGTTCGACAAC
ATCTTCAACACGGCGGAGCCCTACTACATGCGCGCGGGGGTCGGGACGCT
CGTCAAGCCGCCTGCTCGGACGCAACAGGACTCCTTGACGACGGCGAGTG
GCCTCAAGATCAACAAGTTGGTGAAGGGTACCGGTCCCGTGGCGGAGCAA
GGCGACCTCATCGGTGTCCGTTTCAAGGGCAACTACGGCACCTACGAGTT
CGACAACATCTTCAACACGGCGGAGCCCTACTACATGCGCGCGGGGGTCG
GGACGCTCGTCAAGGGCGTGGAGGAGGCGTTGTTAATGATGAGAGTGGGC
GACAAGTGGCAGCTCACGTGCCCGGCTAACCTCGCCTTCGGGAACAAGGG
CCGCCCACCGAGCCCCGGAAGGCCGAGGTGAGGCGTGGAGGAGGCGTTGT
TAATGATGAGAGTGGGCGACAAGTGGCAGCTCACGTGCCCGGCTAACCTC
GCCTTCGGGAACAAGGGCCGCCCACCGAGCCCCGGAAGGCCGAGGTGA
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