mRNA_E-fasciculatus_F_contig1469.3363.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1469.3363.1
Unique NamemRNA_E-fasciculatus_F_contig1469.3363.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1469.3363.1 vs. uniprot
Match: A0A6H5K7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W6_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.640e-40
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:  244 SSATQEPLSGQKIRIDVVVVPEGPSDQTTALVFRDIAETVQHGLHNLGHPSRIVYCANLVTDHCFAKEGKFIILAPHNLESYFTGDGGLAVL 519
            +++TQ+ L  Q+ RIDVVVV EGPSDQTTALVFRDIAETVQ GL NLGHPSRIVYC NLVTDHCFAK GKFIILAPHNL SYFTGDGGLAVL
Sbjct:   11 TTSTQKLLWVQQ-RIDVVVVLEGPSDQTTALVFRDIAETVQDGLQNLGHPSRIVYCTNLVTDHCFAKGGKFIILAPHNLASYFTGDGGLAVL 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1469.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7W6_9PHAE2.640e-4083.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1469contigE-fasciculatus_F_contig1469:131..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size519
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1469.3363.1prot_E-fasciculatus_F_contig1469.3363.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1469 131..1055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.865266-CDS-E-fasciculatus_F_contig1469:130..3981622927952.865266-CDS-E-fasciculatus_F_contig1469:130..398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1469 131..398 -
1695995764.543831-CDS-E-fasciculatus_F_contig1469:130..3981695995764.543831-CDS-E-fasciculatus_F_contig1469:130..398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1469 131..398 -
1622927952.8809478-CDS-E-fasciculatus_F_contig1469:942..10551622927952.8809478-CDS-E-fasciculatus_F_contig1469:942..1055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1469 943..1055 -
1695995764.5525749-CDS-E-fasciculatus_F_contig1469:942..10551695995764.5525749-CDS-E-fasciculatus_F_contig1469:942..1055Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1469 943..1055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.8930962-UTR-E-fasciculatus_F_contig1469:1055..11931622927952.8930962-UTR-E-fasciculatus_F_contig1469:1055..1193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1469 1056..1193 -
1695995764.5614805-UTR-E-fasciculatus_F_contig1469:1055..11931695995764.5614805-UTR-E-fasciculatus_F_contig1469:1055..1193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1469 1056..1193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1469.3363.1

>prot_E-fasciculatus_F_contig1469.3363.1 ID=prot_E-fasciculatus_F_contig1469.3363.1|Name=mRNA_E-fasciculatus_F_contig1469.3363.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
MRNLGRLWMLVGLVRLAPSATGENRQHLDRRDLQDSSATQEPLSGQKIRI
DVVVVPEGPSDQTTALVFRDIAETVQHGLHNLGHPSRIVYCANLVTDHCF
AKEGKFIILAPHNLESYFTGDGGLAVL
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mRNA from alignment at E-fasciculatus_F_contig1469:131..1193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1469.3363.1 ID=mRNA_E-fasciculatus_F_contig1469.3363.1|Name=mRNA_E-fasciculatus_F_contig1469.3363.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1063bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1469:131..1193- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGAACCATTTCTCGCCTCATCCAACGTCCAACATTGGATACTATCCTTG
CACATCACCTGGTTTGCGATCGAAACGTATTGCTGCGCCTAACGTGAGGT
GCTAGATCTCGGCAACTTGATCCCATCAGCTACCCTCTATGAGAAATCTC
GGCAGACTATGGATGCTCGTTGGACTGGTTCGTCTCGCTCCGTCAGCAAC
CGGAGAAAACAGACAACATCTCGACCGCCGCGATCTCCAAGATTCATCAG
CGTGAGCAACAAAGCCCATTCGTGACTATACATGATGAATATGGAGAATG
GAGATGGTCTCTCCGCGGTTGTTTCAGCTACAGTAGTCTCGGCACCTCAC
AACGTCCTGCTGTTAAAAAACTCGTCGCGTTATATTTAGTAGGCTTTGCA
CATGTCATGTATGCATAGTCTATCCGACGTCAAAATCTGACATCCCAATA
CGGTGTTGTGGGATGACAGCACACAGACAAGCGCTGTTACCTGGTATGCA
TGCGGTCGGATGAACGTTTCTACCGGACTACAATGTATGTTGGTGCTGAC
CCCAGCTGTGGCTCTACTGGTGGGGGATGTCCATCTTCAGCAATGATACC
GGTAGGCGACATGTTGTCGACTACATATACTCCTGGTGGCCCCAGTTTGT
CTACTAGTACTGCCGATTAGTCTGAGGAATTTCCCGGACGCCTGTTCAAC
TGTGCACCAATGATTATCAATTTTACTCGGCAAGCAGGCCCACGATCTGT
TGTTCACATGACCCACCCCATGACCCAATCCCACCCGACGACCAGCACAC
AGGAACCGTTGTCGGGACAAAAAATACGGATTGACGTCGTTGTCGTGCCG
GAAGGGCCTTCGGACCAAACGACAGCCCTGGTGTTTCGTGACATTGCTGA
GACTGTGCAACATGGTCTGCACAACCTTGGGCACCCATCGAGGATTGTGT
ATTGCGCGAACTTAGTGACTGACCATTGCTTTGCCAAGGAGGGGAAATTC
ATCATCCTCGCGCCACACAATCTGGAGAGTTACTTCACTGGGGATGGAGG
ACTAGCGGTACTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1469:131..1193-

>mRNA_E-fasciculatus_F_contig1469.3363.1 ID=mRNA_E-fasciculatus_F_contig1469.3363.1|Name=mRNA_E-fasciculatus_F_contig1469.3363.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1469:131..1193- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGAAATCTCGGCAGACTATGGATGCTCGTTGGACTGGTTCGTCTCGC
TCCGTCAGCAACCGGAGAAAACAGACAACATCTCGACCGCCGCGATCTCC
AAGATTCATCAGCATGAGAAATCTCGGCAGACTATGGATGCTCGTTGGAC
TGGTTCGTCTCGCTCCGTCAGCAACCGGAGAAAACAGACAACATCTCGAC
CGCCGCGATCTCCAAGATTCATCAGCCACACAGGAACCGTTGTCGGGACA
AAAAATACGGATTGACGTCGTTGTCGTGCCGGAAGGGCCTTCGGACCAAA
CGACAGCCCTGGTGTTTCGTGACATTGCTGAGACTGTGCAACATGGTCTG
CACAACCTTGGGCACCCATCGAGGATTGTGTATTGCGCGAACTTAGTGAC
TGACCATTGCTTTGCCAAGGAGGGGAAATTCATCATCCTCGCGCCACACA
ATCTGGAGAGTTACTTCACTGGGGATGGAGGACTAGCGGTACTCCACACA
GGAACCGTTGTCGGGACAAAAAATACGGATTGACGTCGTTGTCGTGCCGG
AAGGGCCTTCGGACCAAACGACAGCCCTGGTGTTTCGTGACATTGCTGAG
ACTGTGCAACATGGTCTGCACAACCTTGGGCACCCATCGAGGATTGTGTA
TTGCGCGAACTTAGTGACTGACCATTGCTTTGCCAAGGAGGGGAAATTCA
TCATCCTCGCGCCACACAATCTGGAGAGTTACTTCACTGGGGATGGAGGA
CTAGCGGTACTC
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