prot_E-fasciculatus_F_contig14687.3362.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig14687.3362.1
Unique Nameprot_E-fasciculatus_F_contig14687.3362.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length153
Homology
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.070e-52
Identity = 93/130 (71.54%), Postives = 104/130 (80.00%), Query Frame = 0
Query:    1 MNNGTPXXXXXXXXXXXKRHPALAPLLPKSLITKKIPAPLPEDVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWS-QAGDPALCPTCRVPFNKIKKTLTPKDMAKEKLRNERDK 129
            MNNGTP           KRHPALAP+LPKSLITKKIPAP PEDV R KKAA +DAKK E+C +C  ALPDI RG++ACGHTFCFGCIH WS ++GD  LCP+CRVPFNKIKKTL+PKD+ KEKLRNE DK
Sbjct:    1 MNNGTPPGDAPTNN---KRHPALAPVLPKSLITKKIPAPHPEDVERTKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNEVDK 127          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.630e-51
Identity = 93/129 (72.09%), Postives = 102/129 (79.07%), Query Frame = 0
Query:    1 MNNGTPXXXXXXXXXXXKRHPALAPLLPKSLITKKIPAPLPEDVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIW-SQAGDPALCPTCRVPFNKIKKTLTPKDMAKEKLRNERD 128
            MNNGTP           KRHPALAP LPKSLITKKIPAP PEDV R +KAA +DAKK E+C +CL ALPDI RG++ACGHTFCFGCIH W S  GD ALCP+CR PFNKIKKTL+PKD+ KEKLRNERD
Sbjct:    1 MNNGTPPGDAPNNN---KRHPALAPFLPKSLITKKIPAPHPEDVERTRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERD 126          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 3.860e-16
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 0
Query:   18 KRHPALAPLLPKSLITKKIPAPLPED-VARAKKAALED-AKKEE------------------VCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKIKKTLTPKDMAKEK 122
            K  P LAP   +S +T+   APLPE+ +AR +  + E+ A++ E                  +C +C + LPD+ RGVL+CGH FCF CIH W++  + ++CP CRV   +I KTL+P D AK K
Sbjct:   19 KNQPTLAPTPDQSEVTRT--APLPEELIARTEGVSKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWTK--NSSICPGCRVQIKRITKTLSPADEAKSK 139          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.500e-14
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   18 KRHPALAPLLPKSLITKKIPAPLPED-VARAKKAALEDAKKEE--------------------VCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKIKKTLTPKDMAKEK 122
            K  P LAP   +S +T+   APLPE+ +AR +  + E                          +C +C + LP++ RGVL+CGH FCF CIH W++  + ++CP CRV   +I KTL+P D AK K
Sbjct:  114 KNQPTLAPTPDQSEVTRT--APLPEELIARTEGVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXMCAICCDKLPNLERGVLSCGHVFCFACIHQWTK--NSSICPGCRVQIKRITKTLSPADEAKAK 235          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A5A7PSE2_STRAF (Zinc finger family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PSE2_STRAF)

HSP 1 Score: 52.0 bits (123), Expect = 7.100e-5
Identity = 30/73 (41.10%), Postives = 36/73 (49.32%), Query Frame = 0
Query:   43 DVARAKKAALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIW----SQAGDPALCPTCRVPFNKIKK 111
            DV   K+ A   A  E  C +C        RGVL+CGH FCF CI  W    S +G P+ CP C+  F  I K
Sbjct:  296 DVDAGKRMA---APSELSCVICWTEF-SATRGVLSCGHRFCFHCIQNWADHMSLSGKPSTCPLCKASFTCIMK 364          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: A0A388L0H1_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L0H1_CHABU)

HSP 1 Score: 52.0 bits (123), Expect = 8.480e-5
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 0
Query:   61 CTVCLNALPDIG-RGVLACGHTFCFGCIHIWSQAGDPALCPTCRVPFNKI-KKTLTPKDMA 119
            C +CL    D   +G+L CGH FCF CI  W++      CP CR  FN I K+ L P+D A
Sbjct: 1433 CMICLLTTKDAEEKGLLPCGHVFCFKCICCWARTLVNPFCPICRSLFNIITKRRLRPEDEA 1493          
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Match: UPI0009E26718 (uncharacterized protein LOC110019553 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E26718)

HSP 1 Score: 51.6 bits (122), Expect = 9.610e-5
Identity = 23/62 (37.10%), Postives = 31/62 (50.00%), Query Frame = 0
Query:   54 DAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQA----GDPALCPTCRVPFNKIKK 111
            D + E  C +C      + RGVL CGH FC+ CI +W+      G  + CP C+  F  I K
Sbjct:  297 DQQTEPSCVICWTEFCSL-RGVLPCGHRFCYSCIQVWADCMASKGKVSACPLCKANFTSITK 357          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14687.3362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L829_9PHAE3.070e-5271.54RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGW0_ECTSI1.630e-5172.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2A7_9PHAE3.860e-1640.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI7.500e-1437.30Similar to PHD finger family protein, partial n=1 ... [more]
A0A5A7PSE2_STRAF7.100e-541.10Zinc finger family protein n=1 Tax=Striga asiatica... [more]
A0A388L0H1_CHABU8.480e-544.26Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI0009E267189.610e-537.10uncharacterized protein LOC110019553 n=1 Tax=Phala... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..145
NoneNo IPR availablePANTHERPTHR46563FAMILY NOT NAMEDcoord: 48..136
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 54..111
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 61..102
e-value: 8.3E-6
score: 35.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 61..103
e-value: 1.7E-7
score: 31.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 61..103
score: 12.637
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 44..150
e-value: 3.8E-15
score: 57.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 78..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14687contigE-fasciculatus_F_contig14687:75..2515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14687.3362.1mRNA_E-fasciculatus_F_contig14687.3362.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig14687 75..2515 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig14687.3362.1 ID=prot_E-fasciculatus_F_contig14687.3362.1|Name=mRNA_E-fasciculatus_F_contig14687.3362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=153bp
MNNGTPPGGAPNNNNNNKRHPALAPLLPKSLITKKIPAPLPEDVARAKKA
ALEDAKKEEVCTVCLNALPDIGRGVLACGHTFCFGCIHIWSQAGDPALCP
TCRVPFNKIKKTLTPKDMAKEKLRNERDKKRKNATKKQRDRMRRRRASVK
QPV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING