mRNA_E-fasciculatus_F_contig14686.3361.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14686.3361.1
Unique NamemRNA_E-fasciculatus_F_contig14686.3361.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14686.3361.1 vs. uniprot
Match: A0A6H5KRZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ3_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.620e-16
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 DNVELPSHHWEWVGGWMVDSETESSSDQDGWIYGRS 108
            D+V LPSHHWEWVGGWMVDSETE+SSDQDGWIYGRS
Sbjct:  501 DDVGLPSHHWEWVGGWMVDSETEASSDQDGWIYGRS 536
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14686.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRZ3_9PHAE2.620e-1691.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14686contigE-fasciculatus_F_contig14686:2095..2202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927952.7317228-CDS-E-fasciculatus_F_contig14686:2094..22021622927952.7317228-CDS-E-fasciculatus_F_contig14686:2094..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14686 2095..2202 -
1695995764.486255-CDS-E-fasciculatus_F_contig14686:2094..22021695995764.486255-CDS-E-fasciculatus_F_contig14686:2094..2202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14686 2095..2202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14686.3361.1prot_E-fasciculatus_F_contig14686.3361.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14686 2095..2202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14686.3361.1

>prot_E-fasciculatus_F_contig14686.3361.1 ID=prot_E-fasciculatus_F_contig14686.3361.1|Name=mRNA_E-fasciculatus_F_contig14686.3361.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=36bp
DNVELPSHHWEWVGGWMVDSETESSSDQDGWIYGRS
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mRNA from alignment at E-fasciculatus_F_contig14686:2095..2202-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14686.3361.1 ID=mRNA_E-fasciculatus_F_contig14686.3361.1|Name=mRNA_E-fasciculatus_F_contig14686.3361.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14686:2095..2202- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACAACGTGGAGCTACCGAGCCATCACTGGGAGTGGGTCGGGGGCTGGAT
GGTTGACTCCGAGACGGAGTCATCGTCGGATCAAGACGGCTGGATCTACG
GCCGGTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14686:2095..2202-

>mRNA_E-fasciculatus_F_contig14686.3361.1 ID=mRNA_E-fasciculatus_F_contig14686.3361.1|Name=mRNA_E-fasciculatus_F_contig14686.3361.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14686:2095..2202- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACAACGTGGAGCTACCGAGCCATCACTGGGAGTGGGTCGGGGGCTGGAT
GGTTGACTCCGAGACGGAGTCATCGTCGGATCAAGACGGCTGGATCTACG
GCCGGTCGGACAACGTGGAGCTACCGAGCCATCACTGGGAGTGGGTCGGG
GGCTGGATGGTTGACTCCGAGACGGAGTCATCGTCGGATCAAGACGGCTG
GATCTACGGCCGGTCG
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