mRNA_E-fasciculatus_F_contig14678.3355.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14678.3355.1
Unique NamemRNA_E-fasciculatus_F_contig14678.3355.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14678.3355.1 vs. uniprot
Match: A0A6H5J913_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J913_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.720e-25
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:  379 RIISSGDNGVINDSGLMPSADFEAGVGDITVAVKTCESDMLEEEEAEHCTPQGTEVTGDEHESSYVDDWVPEVESTDQERQEESKALSEMDDGEEER 669
            R +SSGDNGV ND G   SA  E  VGD+TVA+KTCESDMLE ++ EHCTPQ TEVTG+EHE  YVDD VPEVEST++ER EE++AL EMDD EE R
Sbjct:   32 RRMSSGDNGVSNDFGSTCSAGTE--VGDMTVAIKTCESDMLESDKEEHCTPQDTEVTGEEHELPYVDDVVPEVESTNEER-EETEALPEMDDAEERR 125
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BLAST of mRNA_E-fasciculatus_F_contig14678.3355.1 vs. uniprot
Match: A0A6H5JRU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 7.300e-21
Identity = 89/224 (39.73%), Postives = 109/224 (48.66%), Query Frame = 1 
Query:    1 MAAARERLTDTSEELGLAFSSLSAVNEDVVARTTGVGALPLSQACARVSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVARASVKLEIDSTVMRDRIISSGDNGVINDSGLMPSADFEAGVGDITVAVKTCESDMLEEEEAEHCTPQGTEVTGDEHESSYVDDWVPEV-----ESTDQERQEESKALSEMDDG 657
            M AARERLTD+SE+L LAF+SL AV+ +  ARTT VG LPLS A +RVSQ                                         XXXXXXXX           A  ++K E D   + +R I SGDN   N S  M S   E    ++ VAVKT ESDM + EE +  +    + TG EHESS  DD   EV      S DQERQ+E++A   +D G
Sbjct:   51 MEAARERLTDSSEKLRLAFASLHAVDGEFAARTTDVGTLPLSLATSRVSQAAGMAKTVALTVLKAAEEAMAAATTARAEAVSAFAIKATTAXXXXXXXXAVKAQGMAKATATVTLKSETDPPTVMERRIPSGDNSGSNGSCSMSSTGMEVATSNMAVAVKTSESDMSDSEEQQKLSQHDVKATGGEHESSRDDDVTSEVGNADFRSADQERQKEAEATLGIDGG 274
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14678.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J913_9PHAE6.720e-2569.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU2_9PHAE7.300e-2139.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14678contigE-fasciculatus_F_contig14678:1425..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_001680.4
Exons5
Model size697
Cds size696
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14678.3355.1prot_E-fasciculatus_F_contig14678.3355.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14678 1425..3241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.9713457-CDS-E-fasciculatus_F_contig14678:1424..18041622927951.9713457-CDS-E-fasciculatus_F_contig14678:1424..1804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 1425..1804 +
1695995764.150627-CDS-E-fasciculatus_F_contig14678:1424..18041695995764.150627-CDS-E-fasciculatus_F_contig14678:1424..1804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 1425..1804 +
1622927951.989399-CDS-E-fasciculatus_F_contig14678:2035..20761622927951.989399-CDS-E-fasciculatus_F_contig14678:2035..2076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2036..2076 +
1695995764.160208-CDS-E-fasciculatus_F_contig14678:2035..20761695995764.160208-CDS-E-fasciculatus_F_contig14678:2035..2076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2036..2076 +
1622927952.0044043-CDS-E-fasciculatus_F_contig14678:2240..22991622927952.0044043-CDS-E-fasciculatus_F_contig14678:2240..2299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2241..2299 +
1695995764.1698844-CDS-E-fasciculatus_F_contig14678:2240..22991695995764.1698844-CDS-E-fasciculatus_F_contig14678:2240..2299Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2241..2299 +
1622927952.0226629-CDS-E-fasciculatus_F_contig14678:2500..26531622927952.0226629-CDS-E-fasciculatus_F_contig14678:2500..2653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2501..2653 +
1695995764.1793485-CDS-E-fasciculatus_F_contig14678:2500..26531695995764.1793485-CDS-E-fasciculatus_F_contig14678:2500..2653Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 2501..2653 +
1622927952.0353627-CDS-E-fasciculatus_F_contig14678:3178..32411622927952.0353627-CDS-E-fasciculatus_F_contig14678:3178..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 3179..3241 +
1695995764.1875787-CDS-E-fasciculatus_F_contig14678:3178..32411695995764.1875787-CDS-E-fasciculatus_F_contig14678:3178..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14678 3179..3241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14678.3355.1

>prot_E-fasciculatus_F_contig14678.3355.1 ID=prot_E-fasciculatus_F_contig14678.3355.1|Name=mRNA_E-fasciculatus_F_contig14678.3355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
MAAARERLTDTSEELGLAFSSLSAVNEDVVARTTGVGALPLSQACARVSQ
AASTAKAAARNVVKAAEAAEAAADTAMAAVSAAQAAQAAATAESAAANTA
VAAAEAAKPVARASVKLEIDSTVMRDRIISSGDNGVINDSGLMPSADFEA
GVGDITVAVKTCESDMLEEEEAEHCTPQGTEVTGDEHESSYVDDWVPEVE
STDQERQEESKALSEMDDGEEEREEDEHGEEE
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mRNA from alignment at E-fasciculatus_F_contig14678:1425..3241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14678.3355.1 ID=mRNA_E-fasciculatus_F_contig14678.3355.1|Name=mRNA_E-fasciculatus_F_contig14678.3355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1817bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14678:1425..3241+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCGGCAAGAGAGCGATTGACGGACACGTCGGAGGAGCTTGGGCT
TGCATTTTCCAGCCTTTCAGCCGTCAATGAAGATGTCGTGGCCCGTACGA
CCGGTGTTGGCGCCCTTCCTCTATCCCAAGCGTGTGCAAGGGTGTCTCAA
GCAGCCAGCACGGCGAAGGCGGCGGCACGGAATGTCGTGAAGGCGGCGGA
GGCAGCAGAGGCCGCAGCCGACACAGCAATGGCGGCGGTATCGGCAGCAC
AAGCAGCACAAGCAGCAGCTACTGCGGAATCAGCAGCAGCAAACACGGCG
GTCGCAGCAGCCGAGGCGGCCAAACCTGTTGCAAGAGCATCCGTAAAGTT
GGAAATTGACTCGACGGTCATGAGGGACAGGTATGCACTTGACGCACTCA
GTACATTGTCCAAAGCTCTGTGTACGTTCGTGCATTGCTTAGTATTTATC
CACCTTTTCTCGCGTTTCGCATGCACGTCGTTTGAACACGTATGGTGACT
CTACACATCCATCACATGCATAGGCTTTCCGAACAATGAATACGGTTGAT
ATGAGCTAACGGCGCGCGCCCACTGCCTTACTCTTCCTGATGTTTCGATC
GCCTCGTTCAGGATAATATCGAGTGGCGACAACGGCGTCATCAATGATTC
CGGTAAGAATGGGGTAGGGAGAGTAGGGACGGCCGTGTAATTTTTTTCTG
TGGTTTATGACATCCCATGCTCTATTAGCCCGCTGCGTCTGTCATGTCAC
CAACATTTCCTCTATGCGAAACCACGGTACCATGCTTGTCGCAACCGGTT
CACATGTTGCACACAGGCTTGATGCCATCTGCTGATTTTGAAGCCGGGGT
TGGTGACATCACGGTGGCAGTCAAGGTGAGACTTGCGTGAAAATTGCGGA
AGATGGGCAACACGGCCACATGTATTTTCGGAAGCTCGTCATATCCCCCG
CTTGTGCCACTGATGGGTGGAAGGGGTATCAGGTCACAAAATACCTCAAC
AGGTCTGCGTCTATAATCACTCCTTTCTGCCCTCGGGTGGATCCCCTTCA
CACCCGTCGTACTTTCCGCCATGAAGACCTGCGAGTCAGACATGTTGGAA
GAGGAAGAGGCGGAACACTGCACACCGCAGGGCACCGAAGTGACAGGAGA
CGAGCACGAGTCATCATACGTCGATGATTGGGTTCCAGAGGTTGAGAGCA
CCGATCAGGAAAGGCAAGAGGAATCCAAGGTACGTACCCTCGTGCCTAGT
CTCGAGGGCGCTGTCGTTTGGTGTATTCGGGTTAGAGTTGACTGGTTGCC
TCGAAGACCCATGCTCCTGCTCGACGTCTCCAACGATTCCGCCTAGCAGG
CGCGCAGCTGCACCTGATGTTCATGGTAATGACTTCATGTTCGGTAATCC
CCGTATAGTGGAAGAAGCGTAGCCGTCGGCACTAGTTTATTGCCGTCGGA
AGTTCTAGTTGTGCTTGATATTGGCAAATTTTACTCTCGTGTCCCTGTGT
CACCACCTACTTGGTCGTCACAAACGAGTTGCTGGTCCAGGTCACCACGG
TTTTGGTTGCCGAGACTGATTGGGCACCAGGTATACCGGTTGCAGTCTTT
GAGTGATTTTGGAGAATTGAGTTGTGCCGTGGGCTACACCAGGAGCTTCC
CTCCCTCTCTTCCACCTTGAAAAAATGTGGCACACATTGCTGGCTCACCT
TCTTGCTAGCACAACAGAGCGGTGGCCGTGTGTCGGCTTGAATGACATTC
CCAGGCCCTTTCGGAGATGGATGACGGGGAAGAGGAGAGAGAGGAAGATG
AGCACGGTGAGGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14678:1425..3241+

>mRNA_E-fasciculatus_F_contig14678.3355.1 ID=mRNA_E-fasciculatus_F_contig14678.3355.1|Name=mRNA_E-fasciculatus_F_contig14678.3355.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14678:1425..3241+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGCGGCAAGAGAGCGATTGACGGACACGTCGGAGGAGCTTGGGCT
TGCATTTTCCAGCCTTTCAGCCGTCAATGAAGATGTCGTGGCCCGTACGA
CCGGTGTTGGCGCCCTTCCTCTATCCCAAGCGTGTGCAAGGGTGTCTCAA
GCAGCCAGCACGGCGAAGGCGGCGGCACGGAATGTCGTGAAGGCGGCGGA
GGCAGCAGAGGCCGCAGCCGACACAGCAATGGCGGCGGTATCGGCAGCAC
AAGCAGCACAAGCAGCAGCTACTGCGGAATCAGCAGCAGCAAACACGGCG
GTCGCAGCAGCCGAGGCGGCCAAACCTGTTGCAAGAGCATCCGTAAAGTT
GGAAATTGACTCGACGGTCATGAGGGACAGATGGCGGCGGCAAGAGAGCG
ATTGACGGACACGTCGGAGGAGCTTGGGCTTGCATTTTCCAGCCTTTCAG
CCGTCAATGAAGATGTCGTGGCCCGTACGACCGGTGTTGGCGCCCTTCCT
CTATCCCAAGCGTGTGCAAGGGTGTCTCAAGCAGCCAGCACGGCGAAGGC
GGCGGCACGGAATGTCGTGAAGGCGGCGGAGGCAGCAGAGGCCGCAGCCG
ACACAGCAATGGCGGCGGTATCGGCAGCACAAGCAGCACAAGCAGCAGCT
ACTGCGGAATCAGCAGCAGCAAACACGGCGGTCGCAGCAGCCGAGGCGGC
CAAACCTGTTGCAAGAGCATCCGTAAAGTTGGAAATTGACTCGACGGTCA
TGAGGGACAGGATAATATCGAGTGGCGACAACGGCGTCATCAATGATTCC
GGATAATATCGAGTGGCGACAACGGCGTCATCAATGATTCCGGCTTGATG
CCATCTGCTGATTTTGAAGCCGGGGTTGGTGACATCACGGTGGCAGTCAA
GGCTTGATGCCATCTGCTGATTTTGAAGCCGGGGTTGGTGACATCACGGT
GGCAGTCAAGACCTGCGAGTCAGACATGTTGGAAGAGGAAGAGGCGGAAC
ACTGCACACCGCAGGGCACCGAAGTGACAGGAGACGAGCACGAGTCATCA
TACGTCGATGATTGGGTTCCAGAGGTTGAGAGCACCGATCAGGAAAGGCA
AGAGGAATCCAAGACCTGCGAGTCAGACATGTTGGAAGAGGAAGAGGCGG
AACACTGCACACCGCAGGGCACCGAAGTGACAGGAGACGAGCACGAGTCA
TCATACGTCGATGATTGGGTTCCAGAGGTTGAGAGCACCGATCAGGAAAG
GCAAGAGGAATCCAAGGCCCTTTCGGAGATGGATGACGGGGAAGAGGAGA
GAGAGGAAGATGAGCACGGTGAGGAGGAGGCCCTTTCGGAGATGGATGAC
GGGGAAGAGGAGAGAGAGGAAGATGAGCACGGTGAGGAGGAG
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