mRNA_E-fasciculatus_F_contig14677.3353.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14677.3353.1
Unique NamemRNA_E-fasciculatus_F_contig14677.3353.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14677.3353.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.050e-14
Identity = 67/86 (77.91%), Postives = 68/86 (79.07%), Query Frame = -2 
Query:    3 KMEPTATTPPKPRLSSPTAXXXXXXXXXXXXXXXXXPHTTASPLGGHARTPGGGGSQEGVGSXXXXXXXXXVAGGLGRTSPRSSSY 260
            K  P ATTPPKPRLSSPTAXXXXXXXXXXXXXXXX P  TASP GGH RTPGGGGSQ GVG+         VAGGLGRTSPRSSSY
Sbjct: 2681 KRGPAATTPPKPRLSSPTAXXXXXXXXXXXXXXXXPPPITASPPGGHDRTPGGGGSQAGVGNPAAAGEGG-VAGGLGRTSPRSSSY 2765
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14677.3353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G824_ECTSI6.050e-1477.91PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14677contigE-fasciculatus_F_contig14677:207..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size966
Cds size684
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.8409636-UTR-E-fasciculatus_F_contig14677:206..4881622927951.8409636-UTR-E-fasciculatus_F_contig14677:206..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14677 207..488 +
1695995764.1101162-UTR-E-fasciculatus_F_contig14677:206..4881695995764.1101162-UTR-E-fasciculatus_F_contig14677:206..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14677 207..488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.8607726-CDS-E-fasciculatus_F_contig14677:488..11721622927951.8607726-CDS-E-fasciculatus_F_contig14677:488..1172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 489..1172 +
1695995764.11948-CDS-E-fasciculatus_F_contig14677:488..11721695995764.11948-CDS-E-fasciculatus_F_contig14677:488..1172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14677 489..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14677.3353.1prot_E-fasciculatus_F_contig14677.3353.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14677 489..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14677.3353.1

>prot_E-fasciculatus_F_contig14677.3353.1 ID=prot_E-fasciculatus_F_contig14677.3353.1|Name=mRNA_E-fasciculatus_F_contig14677.3353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
MSPDSSPDATVAAALGGETFGRGGAASNPPNISPDSSPEATVEAALGVET
FGRGGAASKPPNMSPDSSPDATVAAAAVEGAAFRRGGAASNPPNMSPDSS
PEATVAAALGGETFGRGGAASNPPNMSPDSSPDATVAAEVEGAAFRRGGA
ASNPPNMSPESSPEATVAAAAVEAAAFRRGGAASNPPNISPDSSPEATVA
AAAVEAAAFRRGGAASNPPNMSPESSPE
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mRNA from alignment at E-fasciculatus_F_contig14677:207..1172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14677.3353.1 ID=mRNA_E-fasciculatus_F_contig14677.3353.1|Name=mRNA_E-fasciculatus_F_contig14677.3353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:207..1172+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTAGCTGCTGGACCGCGGAGACGTCCGCCCAAGTCCCCCCGCAACCCC
CCCCCCTCCTCCTCCTCCTGCCGGGCTGCCCACACCCTCCTGCGAGCCGC
CGCCGCCCGGGGTCCGGGCGTGGCCTCCCAGGGGCGACGCCGTTGTATGG
GGGGGGGCGTCGAAGGAGGCGAAAAGGTCGCTCGACAGCTCGCCCGTTGC
GACGGCGGTGGGGCTCGACAGCCGAGGTTTGGGGGGGGTGGTTGCTGTGG
GCTCCATCTTTGGACCGTCAAAGTCGCCGAACATGTCACCAGACAGCTCG
CCAGACGCTACAGTAGCTGCGGCGCTTGGGGGAGAAACCTTCGGTCGGGG
AGGCGCGGCATCAAACCCACCGAACATATCACCAGACAGCTCGCCGGAGG
CTACTGTAGAAGCGGCGCTTGGGGTAGAAACCTTCGGTCGGGGAGGCGCG
GCATCGAAACCACCGAACATGTCGCCAGACAGCTCGCCGGACGCTACGGT
AGCAGCAGCGGCGGTTGAGGGAGCAGCCTTCCGTCGGGGCGGCGCGGCAT
CAAACCCACCGAACATGTCACCAGACAGCTCGCCGGAGGCTACGGTAGCA
GCGGCGCTTGGGGGAGAAACCTTCGGTCGGGGAGGCGCGGCATCAAACCC
ACCGAACATGTCACCAGACAGCTCGCCAGACGCTACGGTAGCAGCGGAGG
TGGAAGGAGCAGCCTTCCGTCGGGGAGGCGCGGCGTCAAATCCACCGAAC
ATGTCACCAGAAAGCTCGCCGGAAGCTACGGTAGCAGCAGCGGCGGTCGA
GGCAGCAGCCTTCCGCCGGGGCGGCGCGGCATCAAACCCACCGAACATAT
CACCAGACAGCTCGCCGGAAGCTACGGTAGCAGCAGCGGCGGTCGAGGCA
GCAGCCTTCCGTCGGGGAGGCGCGGCATCAAATCCACCGAACATGTCACC
AGAAAGCTCACCGGAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14677:207..1172+

>mRNA_E-fasciculatus_F_contig14677.3353.1 ID=mRNA_E-fasciculatus_F_contig14677.3353.1|Name=mRNA_E-fasciculatus_F_contig14677.3353.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14677:207..1172+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCACCAGACAGCTCGCCAGACGCTACAGTAGCTGCGGCGCTTGGGGG
AGAAACCTTCGGTCGGGGAGGCGCGGCATCAAACCCACCGAACATATCAC
CAGACAGCTCGCCGGAGGCTACTGTAGAAGCGGCGCTTGGGGTAGAAACC
TTCGGTCGGGGAGGCGCGGCATCGAAACCACCGAACATGTCGCCAGACAG
CTCGCCGGACGCTACGGTAGCAGCAGCGGCGGTTGAGGGAGCAGCCTTCC
GTCGGGGCGGCGCGGCATCAAACCCACCGAACATGTCACCAGACAGCTCG
CCGGAGGCTACGGTAGCAGCGGCGCTTGGGGGAGAAACCTTCGGTCGGGG
AGGCGCGGCATCAAACCCACCGAACATGTCACCAGACAGCTCGCCAGACG
CTACGGTAGCAGCGGAGGTGGAAGGAGCAGCCTTCCGTCGGGGAGGCGCG
GCGTCAAATCCACCGAACATGTCACCAGAAAGCTCGCCGGAAGCTACGGT
AGCAGCAGCGGCGGTCGAGGCAGCAGCCTTCCGCCGGGGCGGCGCGGCAT
CAAACCCACCGAACATATCACCAGACAGCTCGCCGGAAGCTACGGTAGCA
GCAGCGGCGGTCGAGGCAGCAGCCTTCCGTCGGGGAGGCGCGGCATCAAA
TCCACCGAACATGTCACCAGAAAGCTCACCGGAAATGTCACCAGACAGCT
CGCCAGACGCTACAGTAGCTGCGGCGCTTGGGGGAGAAACCTTCGGTCGG
GGAGGCGCGGCATCAAACCCACCGAACATATCACCAGACAGCTCGCCGGA
GGCTACTGTAGAAGCGGCGCTTGGGGTAGAAACCTTCGGTCGGGGAGGCG
CGGCATCGAAACCACCGAACATGTCGCCAGACAGCTCGCCGGACGCTACG
GTAGCAGCAGCGGCGGTTGAGGGAGCAGCCTTCCGTCGGGGCGGCGCGGC
ATCAAACCCACCGAACATGTCACCAGACAGCTCGCCGGAGGCTACGGTAG
CAGCGGCGCTTGGGGGAGAAACCTTCGGTCGGGGAGGCGCGGCATCAAAC
CCACCGAACATGTCACCAGACAGCTCGCCAGACGCTACGGTAGCAGCGGA
GGTGGAAGGAGCAGCCTTCCGTCGGGGAGGCGCGGCGTCAAATCCACCGA
ACATGTCACCAGAAAGCTCGCCGGAAGCTACGGTAGCAGCAGCGGCGGTC
GAGGCAGCAGCCTTCCGCCGGGGCGGCGCGGCATCAAACCCACCGAACAT
ATCACCAGACAGCTCGCCGGAAGCTACGGTAGCAGCAGCGGCGGTCGAGG
CAGCAGCCTTCCGTCGGGGAGGCGCGGCATCAAATCCACCGAACATGTCA
CCAGAAAGCTCACCGGAA
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