mRNA_E-fasciculatus_F_contig14663.3347.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14663.3347.1
Unique NamemRNA_E-fasciculatus_F_contig14663.3347.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14663.3347.1 vs. uniprot
Match: D7FZL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL1_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.650e-55
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 LEYGKGAQANFLTSKKHQYRKWANQPAEARNAESATSTMWRRLAPTMEAFFCLDSDTACDKPNAQQSKAQGVFKDAKKRKVNTSGFETRLKKTRL--LGHYLGVLSLSEI 324
            LEYGKGAQANFLTSKKHQYRKWANQPAEARNA +ATSTMWRRLAPTMEAFF LDSDTACD+PNAQQSKAQGVFKDAKK+KVN SGF TRLK  R   LG  +GVL LSEI
Sbjct:   11 LEYGKGAQANFLTSKKHQYRKWANQPAEARNAANATSTMWRRLAPTMEAFFRLDSDTACDEPNAQQSKAQGVFKDAKKKKVNKSGFGTRLKIYRFFCLG-IIGVLPLSEI 119
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BLAST of mRNA_E-fasciculatus_F_contig14663.3347.1 vs. uniprot
Match: D7G7E9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E9_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.590e-42
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 LEYGKGAQANFLTSKKHQYRKWANQPAEARNAESATSTMWRRLAPTMEAFFCLDSDTACDKPNAQQSKAQGVFKDAKKRK 240
            LEYGKGAQANFLTSKKHQYRKWANQPAEARNA +ATSTMWRRLAPTMEAFF LDSDTACD+PNAQQSKAQGVFKDAKK+K
Sbjct:  350 LEYGKGAQANFLTSKKHQYRKWANQPAEARNAANATSTMWRRLAPTMEAFFRLDSDTACDEPNAQQSKAQGVFKDAKKKK 429
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BLAST of mRNA_E-fasciculatus_F_contig14663.3347.1 vs. uniprot
Match: A0A6H5KVU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.020e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 LEYGKGAQANFLTSKKHQYRKWANQPAEARNAESATS-TMW 120
            LEYGKGAQANFLTSKKHQYRKWANQPAEAR +E+  + T W
Sbjct:  384 LEYGKGAQANFLTSKKHQYRKWANQPAEARQSEAFNAYTSW 424
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14663.3347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZL1_ECTSI7.650e-5585.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7E9_ECTSI3.590e-4293.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KVU1_9PHAE4.020e-1180.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14663contigE-fasciculatus_F_contig14663:2..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000060.1
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927951.0660048-CDS-E-fasciculatus_F_contig14663:1..901622927951.0660048-CDS-E-fasciculatus_F_contig14663:1..90Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14663 2..90 +
1695995763.6990309-CDS-E-fasciculatus_F_contig14663:1..901695995763.6990309-CDS-E-fasciculatus_F_contig14663:1..90Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14663 2..90 +
1622927951.0799906-CDS-E-fasciculatus_F_contig14663:809..10441622927951.0799906-CDS-E-fasciculatus_F_contig14663:809..1044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14663 810..1044 +
1695995763.7076726-CDS-E-fasciculatus_F_contig14663:809..10441695995763.7076726-CDS-E-fasciculatus_F_contig14663:809..1044Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14663 810..1044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14663.3347.1prot_E-fasciculatus_F_contig14663.3347.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14663 2..1044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14663.3347.1

>prot_E-fasciculatus_F_contig14663.3347.1 ID=prot_E-fasciculatus_F_contig14663.3347.1|Name=mRNA_E-fasciculatus_F_contig14663.3347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
LEYGKGAQANFLTSKKHQYRKWANQPAEARNAESATSTMWRRLAPTMEAF
FCLDSDTACDKPNAQQSKAQGVFKDAKKRKVNTSGFETRLKKTRLLGHYL
GVLSLSEI
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mRNA from alignment at E-fasciculatus_F_contig14663:2..1044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14663.3347.1 ID=mRNA_E-fasciculatus_F_contig14663.3347.1|Name=mRNA_E-fasciculatus_F_contig14663.3347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1043bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14663:2..1044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGAGTATGGGAAGGGAGCGCAAGCTAACTTCCTCACGAGCAAGAAGCA
CCAGTACCGGAAGTGGGCGAACCAACCCGCGGAAGCACGGTGAGTTCGCG
TGTCTTTATTTTTGGCATCGACGGCGGTGTGCATGAGAAGTGTTTTTGTG
GGTGTATCATGTCATGGATTAATTTTTAGCATTTTGTTCCCTGTGCTCCA
CACAAATAGGCAAAGCGAAGCGTTTAACGCATACACAAGTTGGGTACGAA
AGGGATGCATACTAAAATACTGCTGTCATTCAAAATTTGAAAATGTAAAC
CATAGTTATGACAGAACTACAACAAGCGGCCTGTGCGTACGTACTGCACG
CCCGCGCGCCATAAACGATTGATTGCGTTTACTGGTAGGCCTCGCTTGCA
TGTTCCATGACGAGCTAGACGGGAAGCTGACGGTATTAGCATAGGAATAT
TTGCTCAGACTACTCCGACCCGGGCAATAGTCAATCATCGTATAAATAAC
CCCGCAGCCAACGCCGCCGGTGTAGATGGATGGAGAGAGCGGGAGAGAGA
GGGGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATG
ACACGGTCGTTTAACAAGCAAATGCTGTGTTTGGTTGGCGTTTTGGTTAG
ATGTCGAGCGTCTAACCAAAACGGAAACACGTGGACAGGCACGTATTCCA
TCGATAACTTGGGTTTCAGTCTTCATTCGAAACCTACCCCAGCGACGTTT
TTGTTTGTGTCAAACGATCATCTAACATCGCCTTTTGTAGCTGTTTCATT
GTCGACAGGAACGCGGAGAGCGCCACCAGCACGATGTGGCGTAGGCTCGC
ACCGACGATGGAGGCCTTCTTCTGCCTTGACTCCGACACGGCTTGCGACA
AGCCCAACGCGCAGCAGTCGAAAGCTCAGGGGGTGTTCAAGGACGCGAAG
AAGAGAAAGGTGAATACAAGTGGATTCGAAACTCGTCTAAAAAAAACTAG
ACTGCTTGGGCATTATCTTGGTGTACTTTCATTGAGCGAGATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14663:2..1044+

>mRNA_E-fasciculatus_F_contig14663.3347.1 ID=mRNA_E-fasciculatus_F_contig14663.3347.1|Name=mRNA_E-fasciculatus_F_contig14663.3347.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14663:2..1044+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGGAGTATGGGAAGGGAGCGCAAGCTAACTTCCTCACGAGCAAGAAGCA
CCAGTACCGGAAGTGGGCGAACCAACCCGCGGAAGCACGTTGGAGTATGG
GAAGGGAGCGCAAGCTAACTTCCTCACGAGCAAGAAGCACCAGTACCGGA
AGTGGGCGAACCAACCCGCGGAAGCACGGAACGCGGAGAGCGCCACCAGC
ACGATGTGGCGTAGGCTCGCACCGACGATGGAGGCCTTCTTCTGCCTTGA
CTCCGACACGGCTTGCGACAAGCCCAACGCGCAGCAGTCGAAAGCTCAGG
GGGTGTTCAAGGACGCGAAGAAGAGAAAGGTGAATACAAGTGGATTCGAA
ACTCGTCTAAAAAAAACTAGACTGCTTGGGCATTATCTTGGTGTACTTTC
ATTGAGCGAGATCGAACGCGGAGAGCGCCACCAGCACGATGTGGCGTAGG
CTCGCACCGACGATGGAGGCCTTCTTCTGCCTTGACTCCGACACGGCTTG
CGACAAGCCCAACGCGCAGCAGTCGAAAGCTCAGGGGGTGTTCAAGGACG
CGAAGAAGAGAAAGGTGAATACAAGTGGATTCGAAACTCGTCTAAAAAAA
ACTAGACTGCTTGGGCATTATCTTGGTGTACTTTCATTGAGCGAGATC
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