mRNA_E-fasciculatus_F_contig14661.3344.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14661.3344.1
Unique NamemRNA_E-fasciculatus_F_contig14661.3344.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14661.3344.1 vs. uniprot
Match: D8LFL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 6.510e-47
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 ERNGYMPPAKDPDSLNRLKIVYGAMPYHLTPEYLKTERFVKQLKNLIPALEQVLEATAEVSQVDGDNDASRWAQEIGTLTKELNDLMSRGTPSKKG 288
            ERNGYMPPAKDPDSLNRLKIVYGAMP HLTPEY+KTERFVKQLKNLIPALEQVLEATAEVS+V+  NDA RW QEI +LTKEL+DLMSRGTPSK+G
Sbjct:   35 ERNGYMPPAKDPDSLNRLKIVYGAMPPHLTPEYVKTERFVKQLKNLIPALEQVLEATAEVSEVESGNDADRWRQEINSLTKELDDLMSRGTPSKRG 130
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BLAST of mRNA_E-fasciculatus_F_contig14661.3344.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.810e-39
Identity = 80/96 (83.33%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 ERNGYMPPAKDPDSLNRLKIVYGAMPYHLTPEYLKTERFVKQLKNLIPALEQVLEATAEVSQVDGDNDASRWAQEIGTLTKELNDLMSRGTPSKKG 288
            ERNGYMPPAKDPDSLNRL+IVYGAMP HLTPEY+KTERFVKQLKNLIPALEQVLEATAEVS+V+  +DA RW QEI +LTKEL+DL S GTPSK+G
Sbjct: 2181 ERNGYMPPAKDPDSLNRLRIVYGAMPPHLTPEYVKTERFVKQLKNLIPALEQVLEATAEVSEVESGHDADRWRQEISSLTKELDDLTSCGTPSKRG 2276
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14661.3344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFL4_ECTSI6.510e-4787.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR4_9PHAE7.810e-3983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14661contigE-fasciculatus_F_contig14661:45..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001780.1
Exons2
Model size1684
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14661.3344.1prot_E-fasciculatus_F_contig14661.3344.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14661 60..1320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.8364153-UTR-E-fasciculatus_F_contig14661:44..591622927950.8364153-UTR-E-fasciculatus_F_contig14661:44..59Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14661 45..59 +
1695995763.5774605-UTR-E-fasciculatus_F_contig14661:44..591695995763.5774605-UTR-E-fasciculatus_F_contig14661:44..59Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14661 45..59 +
1622927950.8849082-UTR-E-fasciculatus_F_contig14661:1320..24941622927950.8849082-UTR-E-fasciculatus_F_contig14661:1320..2494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14661 1321..2494 +
1695995763.6156516-UTR-E-fasciculatus_F_contig14661:1320..24941695995763.6156516-UTR-E-fasciculatus_F_contig14661:1320..2494Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14661 1321..2494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.8526008-CDS-E-fasciculatus_F_contig14661:59..1761622927950.8526008-CDS-E-fasciculatus_F_contig14661:59..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 60..176 +
1695995763.588077-CDS-E-fasciculatus_F_contig14661:59..1761695995763.588077-CDS-E-fasciculatus_F_contig14661:59..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 60..176 +
1622927950.870088-CDS-E-fasciculatus_F_contig14661:942..13201622927950.870088-CDS-E-fasciculatus_F_contig14661:942..1320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 943..1320 +
1695995763.6023188-CDS-E-fasciculatus_F_contig14661:942..13201695995763.6023188-CDS-E-fasciculatus_F_contig14661:942..1320Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14661 943..1320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14661.3344.1

>prot_E-fasciculatus_F_contig14661.3344.1 ID=prot_E-fasciculatus_F_contig14661.3344.1|Name=mRNA_E-fasciculatus_F_contig14661.3344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=165bp
MPPAKDPDSLNRLKIVYGAMPYHLTPEYLKTERFVKQLKNLIPALEQVLE
ATAEVSQVDGDNDASRWAQEIGTLTKELNDLMSRGTPSKKGGGGGGRSAG
RVGRANGGGSSSSNLGKRNSSGGGRASSGGGGKSSKRRKSSEAAGAGAAT
GAGGRPVKRSRSRR*
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mRNA from alignment at E-fasciculatus_F_contig14661:45..2494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14661.3344.1 ID=mRNA_E-fasciculatus_F_contig14661.3344.1|Name=mRNA_E-fasciculatus_F_contig14661.3344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14661:45..2494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGCGGAACGGTTACATGCCCCCCGCCAAGGACCCCGACAGCCTGAACAG
GCTCAAGATCGTCTACGGCGCCATGCCATATCACCTCACGCCCGAGTACC
TCAAGACGGAGCGGTTCGTCAAGCAGCTCAAGGTGAGAAAGGACTCGTCG
GTTGACGCTTCCTTGACAGCCCGTCAATGCATCTTCGTGGCCAAAATTCT
ACTATAATAGGGTAGTGTAGGTCCTTGTCCTTGACACGCCCAATATACTA
GTTTTAGTGTGCAGGAGGCTTGTCCCTGACGCGCCTGTCAAGTGGTAAAC
CTGCGGCAGCTATCGGGGTGAGGAACAGGGCTTGTTTTTTGTTTTTTTTG
TTGCCTTTGCTCATGTTTTCAGCAGATCAGGGGTGGCACTATTTCGGCTT
GGGTGTGATGACGGGCATGCATGGCCGTTGTGTGCTGCAGCTCGCACGAG
ACGAGACGTCACTTTAGTTGTTTTGCTGCTGCTGCTGCTGCTGCTGCTTT
GATAAATCTGGAGCGCCTGAGACTAGCATCACCAGTACTACCGAAGCGAG
GGGGCTAATCCCAAGCGAGTGGCGTGCTGTGACCGCCGGCCTTTTAGAAC
GTCCGATGAGCACCCATCGTGTTCACCGTGAAAATGTCCCGCCGGTCGGC
ATGGAAACGCGACGCATGTATTGATTGTCATTACTCCTTCGCGATCTCGC
AACCGTCACACCACCCCTGGTGAGCCATGGTCACCAATCGTTCAACCGAC
AGTCAACCTCCCACATCGGTGTCGAATGGTTCTGCACCCTCTGCGCATGT
CTTGTTTCACTCCATGCTGACCTTTTCTTCGCGGCTAATCCTTGCTCTGG
CGTCGTCGTGCGCGCGCGCGCGTGTTTTTTTTTTTTTTTTTTTTGCAGAA
CCTTATCCCCGCGCTGGAGCAAGTCCTCGAGGCGACGGCCGAGGTTTCGC
AGGTGGACGGCGACAATGACGCAAGCCGGTGGGCCCAAGAGATTGGCACC
CTCACGAAAGAGCTGAACGACCTCATGTCGCGTGGGACTCCTTCGAAGAA
AGGAGGGGGAGGGGGAGGGAGGAGCGCGGGAAGAGTGGGCAGGGCAAACG
GCGGTGGAAGCAGCAGCAGCAACCTGGGCAAGCGCAACAGCAGCGGGGGA
GGGAGGGCCAGCAGCGGCGGCGGTGGGAAGTCGTCCAAGAGGAGGAAGTC
TTCGGAGGCGGCGGGGGCGGGGGCGGCGACGGGGGCGGGTGGCCGACCGG
TGAAGCGGTCGCGCTCCCGCCGATAGATAGATGGGGGTGGCGGATGTTGG
CTCGCGAGCACGTCGCGGCGAAGGCCCGCAGTTGGTCGTTGGTTCTACGT
ACCGAGTTGTCCTGGTGCTCGTTGTTTTGGGTACGCATGCCGATACGTCC
TAGTAGTCGTTGTTTTGGTTACACATGCCGACGTCGGCCCTTTGACTCTC
CTAATACGAGGACGCGGCGGGAAAAGCTCCCGGTCAGCTCCACGTGTCTG
GTACAACACATACCGGTGAAGTGGGGTGCGGGAGGAGATTGGATAGCATG
GGTAGGGTAGCACATTCTTCTTGTTTTGTTGCTTGATTGCCATGATGGTC
ATACGCTACACCGCGCACATGGCCAACTGATGGAGAGCACCGCTTGTGCA
CATCTCGCTGCGTGGTGGTTTCTTGCAGGCTCCCCCGATGCATCCATAGG
ATTTTGCTGCGTTTGTTTTGCGGGTGTCAACGGTCCATGCTGTCCGAATG
CGGGAAGTTCCCCATGAGTAGGTCAACGGGCGAGTGTCGGCGGGGTGGGG
CGGGTGTGCATCATCAGGAGTATTTGAAAGGGTTGGTTGTTGTTTTAGGT
GAAGGTGCAAAAGCACCTGGGGTCACTGCCTGAATGGGGGAGTTCCCATG
AGTAGGTGGGCGTGCGGGTGGTCGACGGGGAAGGCTCGGTGAGCACTATC
AGCAGTATTGGAAGGGTTTTGTCTGCTGTTGTGTGAAGGGTGTAAAAGCA
CACACGGTAGACATTCTTGCGTGAAATTGACATTTAGTGTATTATAGTGG
AACTAAGATGGATATTTTCATGGTGCAAAGGCATTACATGTACAGGTCAC
GCCACAAGATGCTTACTGTCGCGGGAATGAAAAGGAGGCGGCTAACTGAG
AGCGCGGTCGAGAGCGCAAACGTACATCGTGTCCCGAGGTGGCGATGTGG
GTTGTTTTTGGTCGGGTTCTGGCGATTCTTGCTTTTGTTTCTACCTGTCG
TTTTATCTTTTGTGGAGATGTGTAGTTTTTTGCTAGCTCTTGACGGCAGG
TATTTTTTATCGAGCGTGCGCGCCCAGACTTGCGTAGTACAAGCAGTCGT
CGAGAGCCCGGAGGGAGGCAGCAGAAGAAAAGAAAGACATGGATGTATGG
CGTGGTTCCTTTTCTCCCAAGGTGCAAGCGAAGATTCCCTCTTCCTAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14661:45..2494+

>mRNA_E-fasciculatus_F_contig14661.3344.1 ID=mRNA_E-fasciculatus_F_contig14661.3344.1|Name=mRNA_E-fasciculatus_F_contig14661.3344.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14661:45..2494+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCCCCGCCAAGGACCCCGACAGCCTGAACAGGCTCAAGATCGTCTA
CGGCGCCATGCCATATCACCTCACGCCCGAGTACCTCAAGACGGAGCGGT
TCGTCAAGCAGCTCAAGATGCCCCCCGCCAAGGACCCCGACAGCCTGAAC
AGGCTCAAGATCGTCTACGGCGCCATGCCATATCACCTCACGCCCGAGTA
CCTCAAGACGGAGCGGTTCGTCAAGCAGCTCAAGAACCTTATCCCCGCGC
TGGAGCAAGTCCTCGAGGCGACGGCCGAGGTTTCGCAGGTGGACGGCGAC
AATGACGCAAGCCGGTGGGCCCAAGAGATTGGCACCCTCACGAAAGAGCT
GAACGACCTCATGTCGCGTGGGACTCCTTCGAAGAAAGGAGGGGGAGGGG
GAGGGAGGAGCGCGGGAAGAGTGGGCAGGGCAAACGGCGGTGGAAGCAGC
AGCAGCAACCTGGGCAAGCGCAACAGCAGCGGGGGAGGGAGGGCCAGCAG
CGGCGGCGGTGGGAAGTCGTCCAAGAGGAGGAAGTCTTCGGAGGCGGCGG
GGGCGGGGGCGGCGACGGGGGCGGGTGGCCGACCGGTGAAGCGGTCGCGC
TCCCGCCGATAGAACCTTATCCCCGCGCTGGAGCAAGTCCTCGAGGCGAC
GGCCGAGGTTTCGCAGGTGGACGGCGACAATGACGCAAGCCGGTGGGCCC
AAGAGATTGGCACCCTCACGAAAGAGCTGAACGACCTCATGTCGCGTGGG
ACTCCTTCGAAGAAAGGAGGGGGAGGGGGAGGGAGGAGCGCGGGAAGAGT
GGGCAGGGCAAACGGCGGTGGAAGCAGCAGCAGCAACCTGGGCAAGCGCA
ACAGCAGCGGGGGAGGGAGGGCCAGCAGCGGCGGCGGTGGGAAGTCGTCC
AAGAGGAGGAAGTCTTCGGAGGCGGCGGGGGCGGGGGCGGCGACGGGGGC
GGGTGGCCGACCGGTGAAGCGGTCGCGCTCCCGCCGATAG
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