mRNA_E-fasciculatus_F_contig14660.3343.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14660.3343.1
Unique NamemRNA_E-fasciculatus_F_contig14660.3343.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14660.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14660contigE-fasciculatus_F_contig14660:883..1201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size150
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14660.3343.1prot_E-fasciculatus_F_contig14660.3343.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14660 883..1180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.7521806-CDS-E-fasciculatus_F_contig14660:882..9691622927950.7521806-CDS-E-fasciculatus_F_contig14660:882..969Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14660 883..969 +
1695995763.5388722-CDS-E-fasciculatus_F_contig14660:882..9691695995763.5388722-CDS-E-fasciculatus_F_contig14660:882..969Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14660 883..969 +
1622927950.7687461-CDS-E-fasciculatus_F_contig14660:1117..11801622927950.7687461-CDS-E-fasciculatus_F_contig14660:1117..1180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14660 1118..1180 +
1695995763.5487123-CDS-E-fasciculatus_F_contig14660:1117..11801695995763.5487123-CDS-E-fasciculatus_F_contig14660:1117..1180Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14660 1118..1180 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.7882268-UTR-E-fasciculatus_F_contig14660:1180..12011622927950.7882268-UTR-E-fasciculatus_F_contig14660:1180..1201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14660 1181..1201 +
1695995763.5657554-UTR-E-fasciculatus_F_contig14660:1180..12011695995763.5657554-UTR-E-fasciculatus_F_contig14660:1180..1201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14660 1181..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14660.3343.1

>prot_E-fasciculatus_F_contig14660.3343.1 ID=prot_E-fasciculatus_F_contig14660.3343.1|Name=mRNA_E-fasciculatus_F_contig14660.3343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=50bp
EIPELVWTKSKIGWTLWGHNLLPLRNGRQGKRGGSHNADATITDVIRQL*
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mRNA from alignment at E-fasciculatus_F_contig14660:883..1201+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14660.3343.1 ID=mRNA_E-fasciculatus_F_contig14660.3343.1|Name=mRNA_E-fasciculatus_F_contig14660.3343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=319bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14660:883..1201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATACCCGAGCTCGTGTGGACGAAGTCGAAAATCGGGTGGACTTTATG
GGGGCACAACTTGCTGCCCTTGCGCAACGGCAGGCAGGCAAGCAAACATG
CACAGTTGGCACCTCAATACGATGTTTGCATTGAGAGGACCAGCCGTACT
CGCTTTTGCAGCTGCACGCCGCACACCCACGTTACCGCCAAGCTCGTCAT
GTCCGATTAACTGTCTCGTTATCGACCGTTCGCAGGGAAAAAGGGGGGGT
TCTCACAACGCGGACGCCACCATCACTGATGTGATTCGACAGCTATGAAA
GCTTGGCATGGCGAAGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14660:883..1201+

>mRNA_E-fasciculatus_F_contig14660.3343.1 ID=mRNA_E-fasciculatus_F_contig14660.3343.1|Name=mRNA_E-fasciculatus_F_contig14660.3343.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14660:883..1201+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GAGATACCCGAGCTCGTGTGGACGAAGTCGAAAATCGGGTGGACTTTATG
GGGGCACAACTTGCTGCCCTTGCGCAACGGCAGGCAGGAGATACCCGAGC
TCGTGTGGACGAAGTCGAAAATCGGGTGGACTTTATGGGGGCACAACTTG
CTGCCCTTGCGCAACGGCAGGCAGGGAAAAAGGGGGGGTTCTCACAACGC
GGACGCCACCATCACTGATGTGATTCGACAGCTATGAGGAAAAAGGGGGG
GTTCTCACAACGCGGACGCCACCATCACTGATGTGATTCGACAGCTATGA
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