mRNA_E-fasciculatus_F_contig14656.3341.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14656.3341.1
Unique NamemRNA_E-fasciculatus_F_contig14656.3341.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14656.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14656contigE-fasciculatus_F_contig14656:2475..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size547
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14656.3341.1prot_E-fasciculatus_F_contig14656.3341.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14656 2533..2963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.3411403-UTR-E-fasciculatus_F_contig14656:2474..25321622927950.3411403-UTR-E-fasciculatus_F_contig14656:2474..2532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14656 2475..2532 +
1695995763.3113897-UTR-E-fasciculatus_F_contig14656:2474..25321695995763.3113897-UTR-E-fasciculatus_F_contig14656:2474..2532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14656 2475..2532 +
1622927950.3906174-UTR-E-fasciculatus_F_contig14656:2963..30711622927950.3906174-UTR-E-fasciculatus_F_contig14656:2963..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14656 2964..3071 +
1695995763.3405902-UTR-E-fasciculatus_F_contig14656:2963..30711695995763.3405902-UTR-E-fasciculatus_F_contig14656:2963..3071Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14656 2964..3071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927950.3590112-CDS-E-fasciculatus_F_contig14656:2532..26991622927950.3590112-CDS-E-fasciculatus_F_contig14656:2532..2699Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14656 2533..2699 +
1695995763.323326-CDS-E-fasciculatus_F_contig14656:2532..26991695995763.323326-CDS-E-fasciculatus_F_contig14656:2532..2699Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14656 2533..2699 +
1622927950.3760602-CDS-E-fasciculatus_F_contig14656:2749..29631622927950.3760602-CDS-E-fasciculatus_F_contig14656:2749..2963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14656 2750..2963 +
1695995763.3320215-CDS-E-fasciculatus_F_contig14656:2749..29631695995763.3320215-CDS-E-fasciculatus_F_contig14656:2749..2963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14656 2750..2963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14656.3341.1

>prot_E-fasciculatus_F_contig14656.3341.1 ID=prot_E-fasciculatus_F_contig14656.3341.1|Name=mRNA_E-fasciculatus_F_contig14656.3341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
MQAPSVCTLGMKELRQGDARICLTGGPTRDRRLQYRCIGQIFLRKRAITR
TRHAEVPIRTKTSFARATLRCRWNREKSFARNNPRLDGTTALGKDKTLRR
NPLRTLTTHVANKYSCSFYGKHSSCT*
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mRNA from alignment at E-fasciculatus_F_contig14656:2475..3071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14656.3341.1 ID=mRNA_E-fasciculatus_F_contig14656.3341.1|Name=mRNA_E-fasciculatus_F_contig14656.3341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=597bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14656:2475..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCTCTCGTCGTTCAAGCACAGGGCGCGTAAGCTTGTAGGGAAAAACGCA
AGGTGTCCATGCAAGCACCGTCCGTGTGTACTCTCGGCATGAAGGAGTTG
CGTCAAGGTGATGCTCGCATCTGCCTGACTGGTGGACCTACAAGAGACCG
AAGACTGCAATACCGCTGTATCGGACAGATTTTCCTTCGGAAACGAGCCA
TCACAAGAACACGCCATGCCGAAGTCGCCGGGTCATGGTAACCTGTAAGT
ATAAAACACCGCTGGTGCACTTTACCCCCATCAGAACAAAAACAAGCTTT
GCACGGGCGACCCTGCGATGCCGCTGGAACCGAGAAAAATCTTTCGCAAG
AAACAACCCACGGCTTGACGGTACTACCGCGTTAGGCAAAGATAAAACTC
TGCGGCGTAACCCTCTTCGGACTCTAACTACGCATGTAGCAAACAAATAT
TCCTGCTCATTTTACGGGAAACACTCATCATGCACGTAGACACAGGTGTT
TCCATGTGTACACGAGTCGCCCCCCGAAAGGCCGAGAGGATCGCTTCTAC
ATCCGTGCGGGACCTAAATCATTGGTAACAAACCAGCTCTTGTTTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14656:2475..3071+

>mRNA_E-fasciculatus_F_contig14656.3341.1 ID=mRNA_E-fasciculatus_F_contig14656.3341.1|Name=mRNA_E-fasciculatus_F_contig14656.3341.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14656:2475..3071+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGCACCGTCCGTGTGTACTCTCGGCATGAAGGAGTTGCGTCAAGG
TGATGCTCGCATCTGCCTGACTGGTGGACCTACAAGAGACCGAAGACTGC
AATACCGCTGTATCGGACAGATTTTCCTTCGGAAACGAGCCATCACAAGA
ACACGCCATGCCGAAGTATGCAAGCACCGTCCGTGTGTACTCTCGGCATG
AAGGAGTTGCGTCAAGGTGATGCTCGCATCTGCCTGACTGGTGGACCTAC
AAGAGACCGAAGACTGCAATACCGCTGTATCGGACAGATTTTCCTTCGGA
AACGAGCCATCACAAGAACACGCCATGCCGAAGTCCCCATCAGAACAAAA
ACAAGCTTTGCACGGGCGACCCTGCGATGCCGCTGGAACCGAGAAAAATC
TTTCGCAAGAAACAACCCACGGCTTGACGGTACTACCGCGTTAGGCAAAG
ATAAAACTCTGCGGCGTAACCCTCTTCGGACTCTAACTACGCATGTAGCA
AACAAATATTCCTGCTCATTTTACGGGAAACACTCATCATGCACGTAGCC
CCATCAGAACAAAAACAAGCTTTGCACGGGCGACCCTGCGATGCCGCTGG
AACCGAGAAAAATCTTTCGCAAGAAACAACCCACGGCTTGACGGTACTAC
CGCGTTAGGCAAAGATAAAACTCTGCGGCGTAACCCTCTTCGGACTCTAA
CTACGCATGTAGCAAACAAATATTCCTGCTCATTTTACGGGAAACACTCA
TCATGCACGTAG
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