mRNA_E-fasciculatus_F_contig1464.3335.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1464.3335.1
Unique NamemRNA_E-fasciculatus_F_contig1464.3335.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1464.3335.1 vs. uniprot
Match: A0A6H5K5D8_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 2.790e-44
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 RQPXXXXXXKDVSTEGTLHEHPLFEALFVVSVEEDASKRGGEGGGAAAPCSSVEAYQRASRQCPPRVVWRFPSSGDSAVREEDVLKFCFPDKEAIKPFR 297
            RQPXXXXXXKDVS EGTL EHPLFEAL+VVSVEEDAS RGG+GG AAAP SSVEAYQRASRQCPPRV+WRFPSSG++AVREEDVLKFCFPD+EAIKP R
Sbjct:    4 RQPXXXXXXKDVSREGTLDEHPLFEALYVVSVEEDASNRGGDGG-AAAPSSSVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPDREAIKPSR 101
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1464.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5D8_9PHAE2.790e-4487.88UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1464contigE-fasciculatus_F_contig1464:2982..4220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.7082577-CDS-E-fasciculatus_F_contig1464:2981..30721622927949.7082577-CDS-E-fasciculatus_F_contig1464:2981..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1464 2982..3072 -
1695995762.9900067-CDS-E-fasciculatus_F_contig1464:2981..30721695995762.9900067-CDS-E-fasciculatus_F_contig1464:2981..3072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1464 2982..3072 -
1622927949.7216444-CDS-E-fasciculatus_F_contig1464:4011..42201622927949.7216444-CDS-E-fasciculatus_F_contig1464:4011..4220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1464 4012..4220 -
1695995763.0065193-CDS-E-fasciculatus_F_contig1464:4011..42201695995763.0065193-CDS-E-fasciculatus_F_contig1464:4011..4220Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1464 4012..4220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1464.3335.1prot_E-fasciculatus_F_contig1464.3335.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1464 2982..4220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1464.3335.1

>prot_E-fasciculatus_F_contig1464.3335.1 ID=prot_E-fasciculatus_F_contig1464.3335.1|Name=mRNA_E-fasciculatus_F_contig1464.3335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
RQPPPPPPPKDVSTEGTLHEHPLFEALFVVSVEEDASKRGGEGGGAAAPC
SSVEAYQRASRQCPPRVVWRFPSSGDSAVREEDVLKFCFPDKEAIKPFR*
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mRNA from alignment at E-fasciculatus_F_contig1464:2982..4220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1464.3335.1 ID=mRNA_E-fasciculatus_F_contig1464.3335.1|Name=mRNA_E-fasciculatus_F_contig1464.3335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1239bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1464:2982..4220- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGCCTCCGCCGCCGCCTCCGCCAAAGGATGTCAGCACGGAGGGGAC
GCTACACGAGCATCCCCTGTTCGAGGCGTTGTTCGTGGTTTCCGTGGAGG
AGGACGCTTCGAAGAGGGGGGGGGAGGGTGGCGGAGCCGCGGCCCCGTGT
TCCAGCGTGGAGGCGTATCAGCGTGCTAGCCGACAGTGCCCTCCTAGGGT
AGTCTGGAGGTAAGATATTCTGTTTCATACCAGCTTGTAGTGAGGAGAAG
AACTGACTCCGGTGTGATGATGTTATGGGTAGTTGGCCTGTGACCGTGCA
GGTGTCCGCATCAGTACCACCGGCACGAATGTTAGAATGTTCTAGAAGGA
ACGGGTTCTAATGCCAAGACACATCTGTTCGGAGATAGGGGAATGCAAAG
TTCCAAACGCCATACTTTACAAAACGAGGAAGATACAGCAGTATTTCGGA
CAGCCGAGAACATCTGTCGCTTCTTCTGCTGTTCCTATCGAACAAACATC
CACCGTTGGGCTATTAATGGTGCAATAGCCGGTGTTGTTGTTGGTGTTGT
TGTTGTTGGTGTTGGTGTTGTTGTTGTTGTTGGTGGTGGTGTTGGTAGTT
GGTGTTGTTGTTGTTGTTGGTGGTGTTGTTGTTGTTGGTGTTGTTGTTGT
TGTTGTTGGTGGTGTTGGTGTTGTTGTTGTTGTTGTTGGTGGTGTTGGTA
GTTGGTGTTGTTGTTGGTGTTGGTGTTGATGTCGGTGTTGGTGTTGGTGT
CCATGGTGGTTGTTGTGATGTTTCTGTGGTGTCGGTGTTTTTTTTGTGAT
GTCGACGCCGATGTCGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCGCTAGTTTTTTTCAATTTATTTATTTCAAAGGCCCAT
AACAATAAAGCCCGCTGTAGAAACAGTAAATTGTCATTTTGTCCTATTTG
GTCTTTTCATACATATATTCTCTCTCATTTTTTTGTTTCACTACAAGGTT
TCTATACCCATATGTTCATTTTGTCCTTTCTAGAGTGTAACTCGTAATTA
GAGCAGTTAATAAATGCCCGCTGTAGACTACCTCATATTTTTTTTGTTCT
TTTCGTACACATGTATTTTCTCGTTTTTTTTCTTTTTTTTTTTACCAGGT
TTCCATCATCTGGCGACAGTGCGGTGAGGGAGGAGGACGTACTCAAGTTT
TGCTTCCCCGACAAGGAAGCCATCAAGCCTTTCAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1464:2982..4220-

>mRNA_E-fasciculatus_F_contig1464.3335.1 ID=mRNA_E-fasciculatus_F_contig1464.3335.1|Name=mRNA_E-fasciculatus_F_contig1464.3335.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1464:2982..4220- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCAGCCTCCGCCGCCGCCTCCGCCAAAGGATGTCAGCACGGAGGGGAC
GCTACACGAGCATCCCCTGTTCGAGGCGTTGTTCGTGGTTTCCGTGGAGG
AGGACGCTTCGAAGAGGGGGGGGGAGGGTGGCGGAGCCGCGGCCCCGTGT
TCCAGCGTGGAGGCGTATCAGCGTGCTAGCCGACAGTGCCCTCCTAGGGT
AGTCTGGAGCGGCAGCCTCCGCCGCCGCCTCCGCCAAAGGATGTCAGCAC
GGAGGGGACGCTACACGAGCATCCCCTGTTCGAGGCGTTGTTCGTGGTTT
CCGTGGAGGAGGACGCTTCGAAGAGGGGGGGGGAGGGTGGCGGAGCCGCG
GCCCCGTGTTCCAGCGTGGAGGCGTATCAGCGTGCTAGCCGACAGTGCCC
TCCTAGGGTAGTCTGGAGGTTTCCATCATCTGGCGACAGTGCGGTGAGGG
AGGAGGACGTACTCAAGTTTTGCTTCCCCGACAAGGAAGCCATCAAGCCT
TTCAGGTGAGTTTCCATCATCTGGCGACAGTGCGGTGAGGGAGGAGGACG
TACTCAAGTTTTGCTTCCCCGACAAGGAAGCCATCAAGCCTTTCAGGTGA
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