mRNA_E-fasciculatus_F_contig14636.3334.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14636.3334.1
Unique NamemRNA_E-fasciculatus_F_contig14636.3334.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14636.3334.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.030e-54
Identity = 96/155 (61.94%), Postives = 102/155 (65.81%), Query Frame = 1 
Query:  115 ANNATTAPTLPAGGNVTATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDACTLPESRPCTETTEFANTNEGIGDYYEPACELVEGEETPGGCNSDGGSLCRMCFFNTPLYVEKHPDEDLPDFPDCPCCVLEFYEQDAAFNLDGPRCES 579
            AN  T APTLPA GNV  TE                                  E AC LPES+PCTE T F+NTNEGIGDYY+PACELVEGEE  GGCN+D  SLCRMCFFNTPLYV KHPDEDLPD+PDCPCCVL+ YEQDA FNLDG RC S
Sbjct:  356 ANTTTAAPTLPAVGNVM-TETPVGGGGDDLAATPSPTVLVLVNNTQAPSFDYEDEGACILPESKPCTEATSFSNTNEGIGDYYDPACELVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYEQDA-FNLDGQRCVS 508
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BLAST of mRNA_E-fasciculatus_F_contig14636.3334.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.250e-21
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:  439 MCFFNTPLYVEKHPDEDLPDFPDCPCCVLEFYEQDAAFNLDGPR 570
            MCFFNTPLYVEKHPDEDLPD+PDCPCCVL+ YEQDA F+LDG R
Sbjct:    1 MCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQDA-FSLDGQR 43
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14636.3334.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.260e-16
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:  283 ACTLPESRPCTETTEFANTNEGIGDYYEPACELVEGEETPGGCNSDGGSLCRMCFFNTPLYVEKHPDE-DLPDFPDCPCCVLEFYEQDA 546
            ACT P   PCT  T F++ N G+G YY+P C       +  GC      LCR C+FN  +  E + D+ D+PD+P+CPCCV++ Y++ A
Sbjct:  468 ACTWPLDGPCTTETLFSDINRGLGAYYDPGC-------SGAGCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDRSA 549
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14636.3334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9X3_9PHAE1.030e-5461.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE45_ECTSI8.250e-2186.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBT9_9PHAE6.260e-1641.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14636contigE-fasciculatus_F_contig14636:5..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004120.1
Exons3
Model size696
Cds size696
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14636.3334.1prot_E-fasciculatus_F_contig14636.3334.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14636 5..2275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.6310434-CDS-E-fasciculatus_F_contig14636:4..2721622927949.6310434-CDS-E-fasciculatus_F_contig14636:4..272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 5..272 +
1695995762.9574907-CDS-E-fasciculatus_F_contig14636:4..2721695995762.9574907-CDS-E-fasciculatus_F_contig14636:4..272Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 5..272 +
1622927949.6467502-CDS-E-fasciculatus_F_contig14636:1026..11761622927949.6467502-CDS-E-fasciculatus_F_contig14636:1026..1176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 1027..1176 +
1695995762.9657204-CDS-E-fasciculatus_F_contig14636:1026..11761695995762.9657204-CDS-E-fasciculatus_F_contig14636:1026..1176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 1027..1176 +
1622927949.6673677-CDS-E-fasciculatus_F_contig14636:1997..22751622927949.6673677-CDS-E-fasciculatus_F_contig14636:1997..2275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 1998..2275 +
1695995762.9739861-CDS-E-fasciculatus_F_contig14636:1997..22751695995762.9739861-CDS-E-fasciculatus_F_contig14636:1997..2275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14636 1998..2275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14636.3334.1

>prot_E-fasciculatus_F_contig14636.3334.1 ID=prot_E-fasciculatus_F_contig14636.3334.1|Name=mRNA_E-fasciculatus_F_contig14636.3334.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
PVAAVTPTPAPQAAATATAAPVMPSPAPVASPAPVAPPANNATTAPTLPA
GGNVTATEAPVGGVGNDSAVTPSPTTAVFVNITEAPSFEYGDEDACTLPE
SRPCTETTEFANTNEGIGDYYEPACELVEGEETPGGCNSDGGSLCRMCFF
NTPLYVEKHPDEDLPDFPDCPCCVLEFYEQDAAFNLDGPRCESIDHRGER
TKRMLRVMLDPRGTGYPWDGLRVGWVTRRTSY
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mRNA from alignment at E-fasciculatus_F_contig14636:5..2275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14636.3334.1 ID=mRNA_E-fasciculatus_F_contig14636.3334.1|Name=mRNA_E-fasciculatus_F_contig14636.3334.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2271bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14636:5..2275+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGTCGCCGCGGTGACGCCTACGCCGGCGCCGCAGGCGGCGGCGACGGC
GACGGCGGCGCCGGTTATGCCGTCGCCAGCGCCGGTGGCGTCGCCGGCGC
CGGTGGCGCCGCCGGCGAATAACGCCACCACCGCCCCTACTCTCCCCGCT
GGCGGGAACGTGACGGCGACGGAGGCCCCGGTCGGCGGCGTTGGAAATGA
TTCGGCGGTGACCCCGTCTCCCACGACGGCGGTCTTTGTGAATATTACTG
AGGCCCCGAGTTTTGAATGTGAGTTTTTTTAACATTTTTTGCTGTTTTTT
TGTTTTGTTTGTGCCCTTGTTCTGCAGGTGTTTTTTTTTCTTTCTGTGGG
TCTTTGTTGTTTTGTTGACTCTTGTTGTTGTTGTTGCTGGCGTTGTCGTC
TATTTAGTTCTGCAGGTATCTTTCTTGTGTTTATTTTTTTTCCTCTCCTC
TTTTTGTGTTGTGTTGGCTCTTGTTGCTGCTGGCGTTGTGGTAGAGTTCT
GCATGTCCTTTTTTTGTTTTAGCTCTCTTTGGTGTGTGTTTGGTTTCGTT
ATTAATTCCTTGGAATCGTGGGTTCGGTGCGCCACCTGGCGGGTGACTGA
CTGACGCCTTGGAAGGTGGCAAGAGGTGCAGGGGATGATAACGCCAAGGT
CTTGCGCCGGCAGCCTGGGGGGGGGTGTCCATACCATGTGAAACCCGCGT
CCACTTTTGGGATGCACCTATGATGGGTGGCTCGTTCTGTGCTGCCTGCC
GTGTGCAGCAAAGGTGTTGACATGGCTGTGGGCGGGTTTCCACCGTCTTC
CGCCTAGCGCAGGATATGCGACAGTTTCAGAAATCGCAACATGTACGAGG
TTCGTTGTTTGCTTGCTGCAAGCATGCTTGGAAGTTCCTCAAAAGAGTTT
GCTTTTGTCGCGCCTTTTTTTTTTTTTTGTCATACGTGTCTGTCTACGCT
ATGCATTCAAGCGTCTTTTCACGTCCCTCACTCCTGTCGACGCTGCACCG
TGCGAAACCGCCATGTGTGCAGACGGAGACGAAGACGCCTGCACCCTTCC
GGAGAGCAGGCCTTGCACGGAAACGACGGAGTTTGCAAACACGAACGAAG
GTATCGGAGACTACTACGAGCCGGCGTGCGAGCTGGTCGAGGGGGAAGAG
ACGCCGGGGGGATGCAACAGTGGTGAGCCGTTTGGGTGTGCTGTCGGTTG
TGCCGTTGGGTGTGGGGGGTTGTGCTCGTGGCGGAGTGTGGTGTTGGTTG
TTGCCATTGGCTTGGTGGGATGTTGCACTGTTGTTGTTGTTGTTGTTGTT
GCTTGATGATAATTGGCGGTGACATTGGTTGGGTATTTTGCTAGTCTGTC
GCTGCATGACGGTGATCGTTGGCTTGGTGGGAATATTTGCTAGGTATTGC
CGTTGCGGTCTCTGGATAGCGTTGCCGTTGCTGGCTGTACCTTGCCGTCG
TTGTTGTTGCTGCTGCTCTGCCGCGCAGTTGTGTTGGCGTCGAGTTCACC
CTCTCTAGATTTATCTCTCTCGGTCGCGACCACCCTTGAATGTGTGCCTA
CCACCGGCTTTTCCCTGGCACTCCTGTGGAAGACGAGCGCGCTTTTGTGG
CCGCCTGCCTACCAGGGAAACGTGATCCCTTTTCCGCCCACCAGCCAGAC
GCTGGACTTTCCCTCCTGTCCCAGACAGAGTCACGCGTCCTGGCGAGAAA
GGAGACAGACGCGTTGTTTGCGATAAAACAAGACAAAAAATGGCGGTGTT
TTTTTATTGATTGTTGTGCGACCCAACCCGTACCTACCTATTGTACCTCT
CTATTGTTAGCATCGACCGCACTAACCAATGGAAAGGCCTCAGTCTCAGT
GCGATTGAAAATACGATTTGAATCTAAGAGGTCATGATGTGTGTGTGTCT
TTTATTACTAGCATCGACCGCGCTAACCGTCTGACTAATGAACGGACGTC
AGTCTCAGTGCGGTTACAAACGTGTGTGTGTTTGTTTGCGCAGACGGGGG
GAGTCTCTGCCGCATGTGCTTCTTCAACACGCCTCTCTACGTGGAGAAAC
ACCCGGACGAGGACCTGCCCGACTTCCCGGATTGCCCGTGCTGCGTCCTG
GAATTTTACGAGCAAGACGCAGCGTTCAACCTGGACGGCCCGAGATGTGA
GTCAATCGATCACCGGGGGGAACGAACGAAGCGGATGTTGCGTGTGATGT
TGGATCCCCGTGGGACGGGCTACCCGTGGGACGGGTTACGCGTGGGGTGG
GTTACCCGTAGGACGAGTTAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14636:5..2275+

>mRNA_E-fasciculatus_F_contig14636.3334.1 ID=mRNA_E-fasciculatus_F_contig14636.3334.1|Name=mRNA_E-fasciculatus_F_contig14636.3334.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14636:5..2275+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCGTCGCCGCGGTGACGCCTACGCCGGCGCCGCAGGCGGCGGCGACGGC
GACGGCGGCGCCGGTTATGCCGTCGCCAGCGCCGGTGGCGTCGCCGGCGC
CGGTGGCGCCGCCGGCGAATAACGCCACCACCGCCCCTACTCTCCCCGCT
GGCGGGAACGTGACGGCGACGGAGGCCCCGGTCGGCGGCGTTGGAAATGA
TTCGGCGGTGACCCCGTCTCCCACGACGGCGGTCTTTGTGAATATTACTG
AGGCCCCGAGTTTTGAATCCCGTCGCCGCGGTGACGCCTACGCCGGCGCC
GCAGGCGGCGGCGACGGCGACGGCGGCGCCGGTTATGCCGTCGCCAGCGC
CGGTGGCGTCGCCGGCGCCGGTGGCGCCGCCGGCGAATAACGCCACCACC
GCCCCTACTCTCCCCGCTGGCGGGAACGTGACGGCGACGGAGGCCCCGGT
CGGCGGCGTTGGAAATGATTCGGCGGTGACCCCGTCTCCCACGACGGCGG
TCTTTGTGAATATTACTGAGGCCCCGAGTTTTGAATACGGAGACGAAGAC
GCCTGCACCCTTCCGGAGAGCAGGCCTTGCACGGAAACGACGGAGTTTGC
AAACACGAACGAAGGTATCGGAGACTACTACGAGCCGGCGTGCGAGCTGG
TCGAGGGGGAAGAGACGCCGGGGGGATGCAACAGTGACGGAGACGAAGAC
GCCTGCACCCTTCCGGAGAGCAGGCCTTGCACGGAAACGACGGAGTTTGC
AAACACGAACGAAGGTATCGGAGACTACTACGAGCCGGCGTGCGAGCTGG
TCGAGGGGGAAGAGACGCCGGGGGGATGCAACAGTGACGGGGGGAGTCTC
TGCCGCATGTGCTTCTTCAACACGCCTCTCTACGTGGAGAAACACCCGGA
CGAGGACCTGCCCGACTTCCCGGATTGCCCGTGCTGCGTCCTGGAATTTT
ACGAGCAAGACGCAGCGTTCAACCTGGACGGCCCGAGATGTGAGTCAATC
GATCACCGGGGGGAACGAACGAAGCGGATGTTGCGTGTGATGTTGGATCC
CCGTGGGACGGGCTACCCGTGGGACGGGTTACGCGTGGGGTGGGTTACCC
GTAGGACGAGTTACACGGGGGGAGTCTCTGCCGCATGTGCTTCTTCAACA
CGCCTCTCTACGTGGAGAAACACCCGGACGAGGACCTGCCCGACTTCCCG
GATTGCCCGTGCTGCGTCCTGGAATTTTACGAGCAAGACGCAGCGTTCAA
CCTGGACGGCCCGAGATGTGAGTCAATCGATCACCGGGGGGAACGAACGA
AGCGGATGTTGCGTGTGATGTTGGATCCCCGTGGGACGGGCTACCCGTGG
GACGGGTTACGCGTGGGGTGGGTTACCCGTAGGACGAGTTAC
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