mRNA_E-fasciculatus_F_contig14633.3333.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14633.3333.1
Unique NamemRNA_E-fasciculatus_F_contig14633.3333.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14633.3333.1 vs. uniprot
Match: D7FMD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD2_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.690e-88
Identity = 179/202 (88.61%), Postives = 182/202 (90.10%), Query Frame = 1 
Query:    1 QVVTTDLELSKQRVTKVESELERTXXXXXXXXXXXQRAATESVEAVSKAEHRKLLEEVAQISTLRESNDMLRSKLGDAEHRSRTAEGSLGQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEK*RLAKALAEAEQAKAALENAXXXXXXXXXAAEKERDDANAIKAKLLPQV 606
            QVVTTDLELSKQRVTKVE+     XXXXXXXXXXX  AATESVEAVSKAEHRKLLEEVAQISTLRESNDMLRSKLGDAE RSRTAEGSL QLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEK RLAKALAEA+Q KAALENA         AAEKERDDANAIKAK+LPQV
Sbjct:   66 QVVTTDLELSKQRVTKVEAXXXXXXXXXXXXXXXXXXAATESVEAVSKAEHRKLLEEVAQISTLRESNDMLRSKLGDAERRSRTAEGSLSQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEKERLAKALAEADQTKAALENAKADLTRGKAAAEKERDDANAIKAKVLPQV 267
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BLAST of mRNA_E-fasciculatus_F_contig14633.3333.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 8.150e-84
Identity = 183/202 (90.59%), Postives = 187/202 (92.57%), Query Frame = 1 
Query:    1 QVVTTDLELSKQRVTKVESELERTXXXXXXXXXXXQRAATESVEAVSKAEHRKLLEEVAQISTLRESNDMLRSKLGDAEHRSRTAEGSLGQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEK*RLAKALAEAEQAKAALENAXXXXXXXXXAAEKERDDANAIKAKLLPQV 606
            QVVTTDLELSKQRVTKVE+     XXXXXXXXXXX RAATESVEAV+KAEHRKLLEEVAQISTLRESNDMLRSKLGDAE RSRTAEGSL QLRAQMAPLQRAQRQQSASSASLASEKESLRKEVE+WKKRVT+LTASFNAVDPKDHEDVIAEK RLAKALAEAEQAKAALENAXXX      AAEKERDDANAIKAKLLPQV
Sbjct:  768 QVVTTDLELSKQRVTKVEAXXXXXXXXXXXXXXXXXRAATESVEAVTKAEHRKLLEEVAQISTLRESNDMLRSKLGDAERRSRTAEGSLSQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVESWKKRVTNLTASFNAVDPKDHEDVIAEKERLAKALAEAEQAKAALENAXXXLTRGKAAAEKERDDANAIKAKLLPQV 969
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BLAST of mRNA_E-fasciculatus_F_contig14633.3333.1 vs. uniprot
Match: A0A7S1YNQ1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNQ1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.670e-9
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1 
Query:  157 KLLEEVAQISTLRESNDMLRSKLGDAEHRSRTAEGSLGQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEK*RLAKA--LAEAEQAKA 504
            KL E  AQ++ + ESN +LR + G  +      E  L + +  +AP  +         AS+ +EK+SL +E+E+WK+RV SL A FN VDP+DH+  +A+   + K   +A+AE+A A
Sbjct: 1185 KLKEAEAQLNVVSESNQLLRVEAGQLKKTVSQLETKLAEAKGAIAPKDKLALHLEGKVASMQAEKDSLSRELESWKRRVESLVAKFNHVDPEDHKKALADAQSMKKERDVAKAEKATA 1302
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14633.3333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMD2_ECTSI1.690e-8888.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRL3_9PHAE8.150e-8490.59TPR_MLP1_2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S1YNQ1_9STRA6.670e-937.29Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14633contigE-fasciculatus_F_contig14633:996..3241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D7FMD2
KEGG koko:K09291,ko:K10405,ko:K12472,ko:K20283
KEGG TC1.I.1
KEGG Pathwayko03013,ko04144,ko05200,ko05216,map03013,map04144,map05200,map05216
KEGG ModuleM00427
GOsGO:0000003,GO:0000075,GO:0000278,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009908,GO:0009909,GO:0009910,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019222,GO:0022402,GO:0022414,GO:0030054,GO:0030071,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031503,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033233,GO:0033234,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046907,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051641,GO:0051649,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071173,GO:0071174,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090567,GO:0099402,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903320,GO:1903321,GO:1905818,GO:1905819,GO:2000026,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG4674@1,KOG4674@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size606
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14633.3333.1prot_E-fasciculatus_F_contig14633.3333.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14633 1718..3097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.5256596-UTR-E-fasciculatus_F_contig14633:995..11051622927949.5256596-UTR-E-fasciculatus_F_contig14633:995..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 996..1105 +
1695995762.8882465-UTR-E-fasciculatus_F_contig14633:995..11051695995762.8882465-UTR-E-fasciculatus_F_contig14633:995..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 996..1105 +
1622927949.5385475-UTR-E-fasciculatus_F_contig14633:1620..17171622927949.5385475-UTR-E-fasciculatus_F_contig14633:1620..1717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 1621..1717 +
1695995762.9010596-UTR-E-fasciculatus_F_contig14633:1620..17171695995762.9010596-UTR-E-fasciculatus_F_contig14633:1620..1717Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 1621..1717 +
1622927949.5837784-UTR-E-fasciculatus_F_contig14633:3097..32411622927949.5837784-UTR-E-fasciculatus_F_contig14633:3097..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 3098..3241 +
1695995762.944121-UTR-E-fasciculatus_F_contig14633:3097..32411695995762.944121-UTR-E-fasciculatus_F_contig14633:3097..3241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14633 3098..3241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927949.5485728-CDS-E-fasciculatus_F_contig14633:1717..17731622927949.5485728-CDS-E-fasciculatus_F_contig14633:1717..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 1718..1773 +
1695995762.9109533-CDS-E-fasciculatus_F_contig14633:1717..17731695995762.9109533-CDS-E-fasciculatus_F_contig14633:1717..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 1718..1773 +
1622927949.5590363-CDS-E-fasciculatus_F_contig14633:2370..25271622927949.5590363-CDS-E-fasciculatus_F_contig14633:2370..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 2371..2527 +
1695995762.924091-CDS-E-fasciculatus_F_contig14633:2370..25271695995762.924091-CDS-E-fasciculatus_F_contig14633:2370..2527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 2371..2527 +
1622927949.5708563-CDS-E-fasciculatus_F_contig14633:3055..30971622927949.5708563-CDS-E-fasciculatus_F_contig14633:3055..3097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 3056..3097 +
1695995762.9339287-CDS-E-fasciculatus_F_contig14633:3055..30971695995762.9339287-CDS-E-fasciculatus_F_contig14633:3055..3097Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14633 3056..3097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14633.3333.1

>prot_E-fasciculatus_F_contig14633.3333.1 ID=prot_E-fasciculatus_F_contig14633.3333.1|Name=mRNA_E-fasciculatus_F_contig14633.3333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=85bp
MLRSKLGDAEHRSRTAEGSLGQLRAQMAPLQRAQRQQSASSASLASEKES
LRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEK*
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mRNA from alignment at E-fasciculatus_F_contig14633:996..3241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14633.3333.1 ID=mRNA_E-fasciculatus_F_contig14633.3333.1|Name=mRNA_E-fasciculatus_F_contig14633.3333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14633:996..3241+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGGTGACGACGGACTTGGAGCTGTCGAAGCAGAGGGTGACCAAGGT
AGAGTCGGAGCTGGAGCGCACGAAGCAGTCGCTCCGGGAGGCTCGGGAGG
AAGTCCAGAGGTACCTATCTACATACCTACCTGCCTATGCTCAGACTGTC
AGTTGCGGCTCCGATGTATATTAAGGGTGCATGTACCTTATAAAAGGGGG
TTCCGATACACAATGAGGGTCGAAATCGGTTGTCACGGACTCGACCCGGT
ATAGTATACAGCAGTAGTTGGGTACCCTCTTATCCCGGTATAAGAGCGGG
CTCCGATATGAGAGGGTCGAGGGCATTTGCCACACCACATCACCCTCTTG
TATCTATCGGAGCCACGACTGTATCCAGAACCTACCTGTAAGGTTTTGAT
CATGGAGGTTTACTGGGCGAGCCTTCGAGTCTCTCGGAGTCAAAGATTAT
AGGCCGTTGAGCTTGTCGGAGATATCACAAGTGGCAGCAGATGGCAGCCA
GCTGTGGTCTGATCCTTCGTGCCTGCTGTTTGATGGCACCGTGGTCTCAT
GAACCCACTTCTGCCTATATTGCCGTCCTATATTCCACCGCGTGTTTGCT
TGCGCTGTTGTTGTTGTTGTGACAGGGCGGCGACGGAGAGCGTGGAGGCC
GTCTCCAAGGCGGAGCACAGGAAGCTGCTGGAAGAGGTGGCCCAGATCAG
CACCCTTCGCGAGAGCAACGACATGCTCCGGAGCAAGCTCGGGGACGCGG
AGCACAGGAGCCGTACGGCCGAGGGGAGGTGTGTGCCTGCCTTTTTTTGC
ACAAGTACGAGGTGTGGGGCGTGTGCCTTGCCCCGTTATTGCACCTTCGG
CTATAATAGCTGCGTCGTTCATCTAGTCGTTTTGTCCGTGCGTGCCTTTT
TTTGCATACTACGAAGTGTGGGATACATGCCTTGCCCGTGCGTGCCATTT
GCAGACAACAGTGGCGGGATGTATTCCTTGACTCGTGAACGCACTGCGTT
GTTCATGTAAATTGACGTCTTGCCCTCCGTGCTTGCCTTTTGCGTACGAA
ATGTGGTGGGTATGTCTTGCCCGTGCGTGCCTCTTGCGTACGAGATGTGG
GGTGTACCTTGCCCGTAATTAGAACCTGTGAAGCTGTTAGCTGCGTTGTC
CGTGAAGGATGTAGTCGTCTTTTTCCGTGCGTAACTTGTTTTGCATACTA
CGAAGTGTGGGATGTTTACCTTGGGGTTGTAGCTGCGTTGTTCAGGCCGT
CTCCGGCGCCGTTTTCGCAAATAATACTTGCATCCCAATCACGTTTTGAT
TCGTCTTTCGCCTCTTCTGCTTCGCGTGCATGTGCCGCGAATCGTTTGGT
GGCGTCTTTTCTTCGCGCAAAAAAGCCTGGGCCAGCTGCGCGCCCAAATG
GCCCCGCTCCAGCGTGCGCAGAGGCAGCAGTCTGCGTCATCGGCATCCCT
TGCTTCGGAGAAGGAAAGCCTCCGCAAGGAGGTGGAGAACTGGAAGAAGC
GCGTCACCAGCCTCACCGCCAGCTTCAACGCGGTAAAAGCACTTTGTTGT
TGTTGGGCGTTGGTGACGATATTTTTTTTTTTGGTGGTGGTGGTACTGGT
GTTGTTGTGGCTGTCGTCATTGTCGTTGTTAGTGGTATGACCCCACCCTC
CTGTTTCACTTGGGTTTAGAGTGGGCGATCTCCGGTTCCCTCTCTAATCG
TCGTTGATTTTGATCATGTTGATATGGTGTTGTTGTTAGTGTTGTTGATA
ATGATGTTGTGTGCTATCGTTGTTGTCCCCACCCTTCTGTTTTCACTTGG
TTTTAGAGTGGGCGATCTCCGATTCCCTCTCTAGTCGTCGTTGATTTGAT
CATGTTGATATGGTGTTGTTGTTAAGTGTTGATAATGATGTTGTGTGCTA
TCGTTGTTGTCCCCACCCTACTGTTTTCACTTGGTTTTAGAGTGGGCGAT
CTCCGGTTCCCTCTCTAGTCGTCGTTGATTTTGATCATGTTGATTATGGT
GTTGTTGTTAGTGTTGTTGATAATGATGTTGTGTGCTATCGTTGTTGTCG
TGTTTGCCAGGTCGACCCCAAGGACCACGAAGACGTGATCGCCGAGAAGT
AGCGACTGGCCAAGGCCCTCGCCGAAGCCGAGCAAGCGAAGGCCGCCCTC
GAGAACGCCAAGGCCGACCTGTCCCGCGGCAAGGCAGCGGCGGAGAAAGA
GCGGGACGACGCCAATGCCATCAAGGCCAAGCTTCTTCCACAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14633:996..3241+

>mRNA_E-fasciculatus_F_contig14633.3333.1 ID=mRNA_E-fasciculatus_F_contig14633.3333.1|Name=mRNA_E-fasciculatus_F_contig14633.3333.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14633:996..3241+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTCCGGAGCAAGCTCGGGGACGCGGAGCACAGGAGCCGTACGGCCGA
GGGGAGATGCTCCGGAGCAAGCTCGGGGACGCGGAGCACAGGAGCCGTAC
GGCCGAGGGGAGCCTGGGCCAGCTGCGCGCCCAAATGGCCCCGCTCCAGC
GTGCGCAGAGGCAGCAGTCTGCGTCATCGGCATCCCTTGCTTCGGAGAAG
GAAAGCCTCCGCAAGGAGGTGGAGAACTGGAAGAAGCGCGTCACCAGCCT
CACCGCCAGCTTCAACGCGCCTGGGCCAGCTGCGCGCCCAAATGGCCCCG
CTCCAGCGTGCGCAGAGGCAGCAGTCTGCGTCATCGGCATCCCTTGCTTC
GGAGAAGGAAAGCCTCCGCAAGGAGGTGGAGAACTGGAAGAAGCGCGTCA
CCAGCCTCACCGCCAGCTTCAACGCGGTCGACCCCAAGGACCACGAAGAC
GTGATCGCCGAGAAGTAGGTCGACCCCAAGGACCACGAAGACGTGATCGC
CGAGAAGTAG
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