mRNA_E-fasciculatus_F_contig14623.3330.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14623.3330.1
Unique NamemRNA_E-fasciculatus_F_contig14623.3330.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.260e-158
Identity = 219/246 (89.02%), Postives = 228/246 (92.68%), Query Frame = 1
Query:    1 MEFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            MEF+CIDPSA CV+DDD+TVDM ENCGYVSGIGNGWCDR NNKEECGYDGGDCCSCTC+S YDDD     EY  F C DP+ASCFGEGTTGSDDFSFHDD QPMSYEFL+W+ETE LPTV DAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSC+TSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL+VHVNGELTHTHESY D TFNTLGVTA
Sbjct:    1 MEFACIDPSAPCVDDDDVTVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQPMSYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTA 245          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 2.200e-150
Identity = 216/246 (87.80%), Postives = 226/246 (91.87%), Query Frame = 1
Query:    1 MEFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            MEFSCIDPSA CVNDDD+T+DM ENCGYVSGIGNGWCDR NNKEECGYDGGDCCSCTC+S YDDD     EY  F C DPSASCFGEGTTGSDDFSFHDD QPMSYEF++W+ET+ LPTV DAVEVGTKTEVGVSATAHD+RPGSSG DVGCGEVGGLGCTATNTRDGI SDIESRWSC+TSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL+VHVNGELTHTHESY D TFNTLGVTA
Sbjct:  462 MEFSCIDPSAPCVNDDDVTIDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQPMSYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESY-DDTFNTLGVTA 706          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 6.070e-139
Identity = 199/246 (80.89%), Postives = 212/246 (86.18%), Query Frame = 1
Query:    1 MEFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            MEF+CIDPSA CV+DDDITVDM ENCGYVSGIGNGWCDR NNKEECGYDGGDCCSCTCES YDDD     EY  F C DP+ASCFGE  TGSDDFS   DDQPMSYEF+ W+ETE LPTV  AVEVGTKTEVGVS+TAHDVRPG S  D GCGEVGGLGCTATNTRDGI S+IESRWSC+T LV DEGPCQIEFTFAEPQ I+DIQVAFW  NER  TL+VH+NGE+THTHESYAD+TFNTLGVTA
Sbjct:  242 MEFACIDPSAPCVDDDDITVDMVENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGEEPTGSDDFST--DDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTA 485          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 1.390e-127
Identity = 196/294 (66.67%), Postives = 212/294 (72.11%), Query Frame = 1
Query:    4 EFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDV-------------------------------------------------HVNGELTHTHESYADSTFNTLGVTA 738
            EFSCIDP+A CV+DDDITVDMFENCGYVSGIGNGWCDR NNKEECGYDGGDCCSCTC+S YDDD     EY  F C DP+ASCFGE +TGSDD+S   DD+PMSYEF+ W+ETE LPTV  AVEVGTKTEVGVSATAHDVR G S  DVGCGEVGGLGCTATNTRDGI S+IESRWSC+T LV DEGPCQIEFTFAEPQ I+DIQVAFW  NER  TL+V                                                 H+NGE+THTHESYAD+TFN LGVTA
Sbjct:  143 EFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYST--DDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEITSRLFWLLCCPRQHLRDCGARSKSFIFLTAQTFPTQVHINGEMTHTHESYADATFNMLGVTA 434          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 380 bits (976), Expect = 1.730e-126
Identity = 194/248 (78.23%), Postives = 206/248 (83.06%), Query Frame = 1
Query:    7 FSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRN--NKEECGYDGGDCCSCTCESDYD-DDDYD-PCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            F+CIDP A CVNDDDITVDMF NC Y   IGNGW   R        GYDGGDCCSCTC++ +D DDDY    EYN   C DP+ASCFGEGTTGSDDF+FHDD QP SYEF+ W+ETE LPTV DAVEVGTKTEVGVSATAHDVRP SS DDVGCG+VGGLGCTATNTRDGIVSDIESRWSC+T LVPDEG CQIEF+FAEPQN+VDIQVAFW  NER  TL VHVNGELTHTHESYADSTFNTLGVTA
Sbjct:  334 FACIDPEAACVNDDDITVDMFVNCEYPVDIGNGWLRWRRLLRVHMRGYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQPTSYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVTA 581          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.740e-123
Identity = 181/248 (72.98%), Postives = 199/248 (80.24%), Query Frame = 1
Query:    1 MEFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTT--GSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            M+FSCIDP+A CVNDDDITVDMF+NCGYVSGIG+GWCD  NNKE CGYDGGDCCSCTCES +D DDY   E   F C DPSA+CFGE T     DD +    D    YEF+ W++TE LPTV DAVEVGTKTEV VSATAHDVR G S  +VGCGE GG GC A N RDGI ++IESRWSC+  L+ DEGPCQIEF+FAEPQNIVDIQVAFW  NERV TL+V+VNGELTHTHESYADSTFNTLGVTA
Sbjct:   30 MQFSCIDPNAPCVNDDDITVDMFDNCGYVSGIGDGWCDSNNNKEACGYDGGDCCSCTCESVWD-DDYTCGEDAFFDCKDPSAACFGEETAMGNGDDSTGRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTA 276          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 9.420e-122
Identity = 179/244 (73.36%), Postives = 199/244 (81.56%), Query Frame = 1
Query:    7 FSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            F+CIDP A CV+DD +TVDM +NC Y+  +GNGWCD  NN E C YDGGDCC CTCES ++DD     E+  F C DP+ASCFGE TTGSDDFS   DDQPMSYEF+ W+ETE LPTV  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSC+T LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TL+V++NGE+THTHESYAD+TFNTLGVTA
Sbjct:  221 FACIDPGAPCVDDDSVTVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFST--DDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTA 458          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 7.060e-121
Identity = 195/311 (62.70%), Postives = 211/311 (67.85%), Query Frame = 1
Query:    4 EFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDV------------------------------------------------------------------HVNGELTHTHESYADSTFNTLGVTA 738
            EFSCIDP+A CV+DDDITVDMFENCGYVSGIGNGWCDR NNKEECGYDGGDCCSCTC+S YDDD     EY  F C DP+ASCFGE +TGSDD+S   DD+PMSYEF+ W+ETE LPTV  AVEVGTKTEVGVSATAHDVR G S  DVGCGEVGGLGCTATNTRDGI S+IESRWSC+T LV DEGPCQIEFTFAEPQ I+DIQVAFW  NER  TL+V                                                                  H+NGE+THTHESY D+TFN LGVTA
Sbjct:  505 EFSCIDPNAACVSDDDITVDMFENCGYVSGIGNGWCDRNNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGEESTGSDDYST--DDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVRATPSRLKTIEIQAVFFGHCVALDNTFATVRHREDGISTRLNAQHGGGARSKSFIFLTAQTFPTQVHINGEMTHTHESYTDATFNMLGVTA 813          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 6.650e-101
Identity = 153/204 (75.00%), Postives = 168/204 (82.35%), Query Frame = 1
Query:  127 KEECGYDGGDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA 738
            K +  YDGGDCC CTCES ++DD     E+  F C DP+ASCFGE TTGSDDFS   DDQPMSYEF+ W+ETE LPTV  AVEVGTKTEVGVS+TAHDVRPG    D GCGEVGGLGCTA NTRDGI S+IESRWSC+T LV DEGPCQIEFTFAEPQ IVDIQVAFW  NER  TL+V++NGE+THTHESYAD+TFNTLGVTA
Sbjct:   10 KTKLSYDGGDCCECTCESAWNDDYTCSSEHGIFNCKDPNASCFGEETTGSDDFST--DDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPG----DDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTA 207          
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Match: D7FI78_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI78_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 7.310e-100
Identity = 159/235 (67.66%), Postives = 175/235 (74.47%), Query Frame = 1
Query:   52 ITVDMFENCGYVSGIGNGWCDRRNNKEECGYDGGDCCSCTCESDYDDDDYDPCE--YNDFACIDPSASCFGEGTTG-SDDFSFHDDDQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL------------------DVHVNGELTHTH 693
            +TVDM ENC   + IG+G+C+   +  ECGYDGG+CCSCTC+S   DD +  C   Y    C DPSASCFGEGTTG SDDF F DDDQ MSY+F+ W+ETE LPTVTDAVE+G +TEV VS TAHD R GSS  +VGCGEVGGLGCTATNTRDGIVSDIES WSC+T LVPDEGPC I FTFAEPQNIVDIQVAFWNDNERVSTL                   VHVNGELTHTH
Sbjct:   23 VTVDMLENCEDAADIGDGYCNEDVDTPECGYDGGNCCSCTCQSAPGDDIFS-CRGGYRSIDCQDPSASCFGEGTTGGSDDFIFGDDDQSMSYQFVNWEETESLPTVTDAVELGAETEVSVSPTAHDGRSGSSSGEVGCGEVGGLGCTATNTRDGIVSDIESTWSCATHLVPDEGPCPIMFTFAEPQNIVDIQVAFWNDNERVSTLGASLEADFDLKRTKTFRPQVHVNGELTHTH 256          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14623.3330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI88_ECTSI1.260e-15889.02Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5JM92_9PHAE2.200e-15087.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI6.070e-13980.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB04_9PHAE1.390e-12766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.730e-12678.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI2.740e-12372.98LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4F9_ECTSI9.420e-12273.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR2_9PHAE7.060e-12162.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F4_ECTSI6.650e-10175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI78_ECTSI7.310e-10067.66LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14623contigE-fasciculatus_F_contig14623:1081..3270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue2e-07
Seed eggNOG ortholog2880.D7FL48
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size738
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14623.3330.1prot_E-fasciculatus_F_contig14623.3330.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14623 1081..3270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.763463-CDS-E-fasciculatus_F_contig14623:1080..12191622927948.763463-CDS-E-fasciculatus_F_contig14623:1080..1219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 1081..1219 +
1695995762.5698736-CDS-E-fasciculatus_F_contig14623:1080..12191695995762.5698736-CDS-E-fasciculatus_F_contig14623:1080..1219Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 1081..1219 +
1622927948.7818744-CDS-E-fasciculatus_F_contig14623:2325..28461622927948.7818744-CDS-E-fasciculatus_F_contig14623:2325..2846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 2326..2846 +
1695995762.5877566-CDS-E-fasciculatus_F_contig14623:2325..28461695995762.5877566-CDS-E-fasciculatus_F_contig14623:2325..2846Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 2326..2846 +
1622927948.7990572-CDS-E-fasciculatus_F_contig14623:3192..32701622927948.7990572-CDS-E-fasciculatus_F_contig14623:3192..3270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 3193..3270 +
1695995762.6011984-CDS-E-fasciculatus_F_contig14623:3192..32701695995762.6011984-CDS-E-fasciculatus_F_contig14623:3192..3270Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14623 3193..3270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14623.3330.1

>prot_E-fasciculatus_F_contig14623.3330.1 ID=prot_E-fasciculatus_F_contig14623.3330.1|Name=mRNA_E-fasciculatus_F_contig14623.3330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=246bp
MEFSCIDPSATCVNDDDITVDMFENCGYVSGIGNGWCDRRNNKEECGYDG
GDCCSCTCESDYDDDDYDPCEYNDFACIDPSASCFGEGTTGSDDFSFHDD
DQPMSYEFLTWDETEILPTVTDAVEVGTKTEVGVSATAHDVRPGSSGDDV
GCGEVGGLGCTATNTRDGIVSDIESRWSCSTSLVPDEGPCQIEFTFAEPQ
NIVDIQVAFWNDNERVSTLDVHVNGELTHTHESYADSTFNTLGVTA
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mRNA from alignment at E-fasciculatus_F_contig14623:1081..3270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14623.3330.1 ID=mRNA_E-fasciculatus_F_contig14623.3330.1|Name=mRNA_E-fasciculatus_F_contig14623.3330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2190bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14623:1081..3270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGTTTTCTTGCATCGACCCCAGCGCGACCTGTGTAAACGATGACGA CATCACGGTCGACATGTTCGAGAACTGTGGCTACGTCTCTGGGATAGGCA ACGGCTGGTGCGACAGAAGAAACAACAAGGAGGAATGCGGTGAGTGGCGG TGCCCTTTTGAGATGATGCCTCATGAAACATTACAGGATACCGCTCTCCT ACAACTGGGTGCCAACACATACACGTCTCGGGAAGGAGGGCTTGTTGTTA CCACCAGAGTCTACTACGGGGCGGTACTCTTGTGTGTGGCATCGCTTTGT GGTTCGATCATTGACCACGCGTCCACCAGAGGACGGAGCATGTTCTATCG GGGCGGTTAGTAATTTAGGTTGAGCAGAGCGTACTTCGGTCTATCTGGTG TGTCCAACACCCTTGAGCGTACTCGGCTTGAAATATGAAGAACTGCTGGT GAATGAACGACTGGTGACCGGAAATGAAGTCAGACCCGCGCTTTCCTTTG ATTGAGTGCACCTTTGACACGGTGCAATTCCCACCTATTTATTGCGCCAT ATATTTTTAACCCCGAGCAATACTTGAACCAAGCGAAGCTCATTGGACAA TATGTCAGGCTTTGGTGGTTGGTTGGGGTACATGGTGTTTCGTTGCTGAC TTTGATGACGTGAAAACGATACGATACCACCTGTTGTCTTTGCAGACACG GCTCTAACCCGTTTCACGTGAGGCATCCGTCTGCGAGGGTCTGAGCACTT GGGCGGACTATTAAGGGTCTTATTCCCTTTATTACCGTTTCCTTTGATAT CGGGCCCTACTGTAGACGCTGCTGCCGATGTACCATTTTTTCCAGGGGTT GGACGAGCGCCTCTTACTCGTCTCTCCCAAACAACTGCTTCTTCGTCAAG CAGCATACGGTGGCGACGATGTGTTGCAACACCTCTCCTACTTATTTTGC AATGCACGCTCTTGTTTCGTGTGGTTGTGAAGATAAGAGCGTCAGACCCA CTCGCTCCCTGCTTGCCGTCGATTGCTCTCAACAGATGGGTATTCAGTGA CAATGTTCGCATCATATGGGGCCAGTGGTGCGGGCTACACGACACAAACC ACAAGCGTCGTGCTTGTCCCGGATCGTACCTTGTATCTTGATGCGAGTCT GGTGACTTTCGATCTTTGTCTCTCTTCCTTCCCAGACACCACCCTTTTGT GACATTTCAGCAACTAATATCTGCCTCTCCTTGTCTATCTCTTAGGCTAC GACGGCGGCGACTGCTGCTCTTGCACATGCGAGAGCGACTATGACGACGA CGACTACGACCCCTGCGAGTACAACGACTTCGCCTGCATTGACCCTAGCG CCTCCTGCTTCGGCGAAGGAACTACGGGCAGCGATGACTTCAGCTTCCAC GACGACGACCAGCCAATGTCGTACGAGTTCCTCACCTGGGATGAGACAGA GATCCTGCCGACGGTCACCGATGCTGTCGAGGTGGGCACCAAGACCGAGG TTGGCGTATCAGCCACCGCCCACGATGTGCGGCCCGGCAGCAGCGGCGAC GACGTCGGGTGCGGAGAGGTCGGTGGCCTTGGCTGCACAGCGACCAACAC CCGTGATGGTATCGTCTCCGACATCGAGTCGAGGTGGTCGTGTTCCACGA GCCTCGTGCCTGACGAAGGGCCCTGCCAGATCGAGTTCACCTTTGCCGAA CCCCAGAACATCGTGGACATCCAGGTTGCCTTCTGGAACGACAACGAGCG CGTCAGCACCCTAGACGTGAGGGTAACACCAATCAAATCGAAGAGTACCT CGTATTGCGTCAAACCAACGACCGAACAAGTCTTCTTTTTCCCGTTGCTG TTAGCCCCCGGCAGCACGTTGGCCGCAGTGAACCAATATGAGGACTGTCT TGAGCAACGTTCATTGAAATGATGGAAGTATTCGCCGCTCTTAGTGATTG AGTGTCGAAAGTGTACACATGGCGGGTTGTAGATTTACCATCAGGCGGGA TATCTTGTCCACACCTATGACGCCCATTCCGAGTGGTGTCCTTCGCCGTT CCCCACAGGCGGTGCTCGAAGCAGACTTTGGTATTCATCGTACGCAATCG TTTCCCACTCAGGTCCACGTCAACGGTGAGCTGACCCACACGCACGAGTC CTACGCCGATTCCACCTTCAACACGCTCGGTGTGACAGCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14623:1081..3270+

>mRNA_E-fasciculatus_F_contig14623.3330.1 ID=mRNA_E-fasciculatus_F_contig14623.3330.1|Name=mRNA_E-fasciculatus_F_contig14623.3330.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1476bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14623:1081..3270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGTTTTCTTGCATCGACCCCAGCGCGACCTGTGTAAACGATGACGA
CATCACGGTCGACATGTTCGAGAACTGTGGCTACGTCTCTGGGATAGGCA
ACGGCTGGTGCGACAGAAGAAACAACAAGGAGGAATGCGATGGAGTTTTC
TTGCATCGACCCCAGCGCGACCTGTGTAAACGATGACGACATCACGGTCG
ACATGTTCGAGAACTGTGGCTACGTCTCTGGGATAGGCAACGGCTGGTGC
GACAGAAGAAACAACAAGGAGGAATGCGGCTACGACGGCGGCGACTGCTG
CTCTTGCACATGCGAGAGCGACTATGACGACGACGACTACGACCCCTGCG
AGTACAACGACTTCGCCTGCATTGACCCTAGCGCCTCCTGCTTCGGCGAA
GGAACTACGGGCAGCGATGACTTCAGCTTCCACGACGACGACCAGCCAAT
GTCGTACGAGTTCCTCACCTGGGATGAGACAGAGATCCTGCCGACGGTCA
CCGATGCTGTCGAGGTGGGCACCAAGACCGAGGTTGGCGTATCAGCCACC
GCCCACGATGTGCGGCCCGGCAGCAGCGGCGACGACGTCGGGTGCGGAGA
GGTCGGTGGCCTTGGCTGCACAGCGACCAACACCCGTGATGGTATCGTCT
CCGACATCGAGTCGAGGTGGTCGTGTTCCACGAGCCTCGTGCCTGACGAA
GGGCCCTGCCAGATCGAGTTCACCTTTGCCGAACCCCAGAACATCGTGGA
CATCCAGGTTGCCTTCTGGAACGACAACGAGCGCGTCAGCACCCTAGACG
CTACGACGGCGGCGACTGCTGCTCTTGCACATGCGAGAGCGACTATGACG
ACGACGACTACGACCCCTGCGAGTACAACGACTTCGCCTGCATTGACCCT
AGCGCCTCCTGCTTCGGCGAAGGAACTACGGGCAGCGATGACTTCAGCTT
CCACGACGACGACCAGCCAATGTCGTACGAGTTCCTCACCTGGGATGAGA
CAGAGATCCTGCCGACGGTCACCGATGCTGTCGAGGTGGGCACCAAGACC
GAGGTTGGCGTATCAGCCACCGCCCACGATGTGCGGCCCGGCAGCAGCGG
CGACGACGTCGGGTGCGGAGAGGTCGGTGGCCTTGGCTGCACAGCGACCA
ACACCCGTGATGGTATCGTCTCCGACATCGAGTCGAGGTGGTCGTGTTCC
ACGAGCCTCGTGCCTGACGAAGGGCCCTGCCAGATCGAGTTCACCTTTGC
CGAACCCCAGAACATCGTGGACATCCAGGTTGCCTTCTGGAACGACAACG
AGCGCGTCAGCACCCTAGACGTCCACGTCAACGGTGAGCTGACCCACACG
CACGAGTCCTACGCCGATTCCACCTTCAACACGCTCGGTGTGACAGCTGT
CCACGTCAACGGTGAGCTGACCCACACGCACGAGTCCTACGCCGATTCCA
CCTTCAACACGCTCGGTGTGACAGCT
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