|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig1462.3328.1 vs. uniprot
Match: D8LKF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF3_ECTSI) HSP 1 Score: 171 bits (434), Expect = 4.840e-47 Identity = 150/166 (90.36%), Postives = 153/166 (92.17%), Query Frame = 1
Query: 1 MQVRKGWMLALAFLCSCLLNPGVASSSSASATPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGTVVAWALFTVLFGVALLMFLYNREQNKRLRARHGDFLRQSLASSDTMNPPYHQAEQLPGHKPDPTMSSF 498
MQVRKGWMLALAFLCSCLLNPGVASSSS+SATPS XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXX SRGTVVAWA FTVL GVALLMFLYNREQNKRLRA+ GDFLRQSLAS+DTMNPPYHQ E LPGHKPDPTMSSF
Sbjct: 1 MQVRKGWMLALAFLCSCLLNPGVASSSSSSATPSPXXXXXXXXXXXXXXXXXXXXXXXXXSAXXXXXXXXXXXXXXXXXXXXXXXXXXXT----SRGTVVAWAFFTVLLGVALLMFLYNREQNKRLRAQRGDFLRQSLASNDTMNPPYHQPEPLPGHKPDPTMSSF 162
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | Protein of unknown function DUF1180 |
| Ec32 ortholog | Ec-16_002750.1 |
| Exons | 3 |
| Model size | 1742 |
| Cds size | 501 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927948.628345-UTR-E-fasciculatus_F_contig1462:14067..15308 | 1622927948.628345-UTR-E-fasciculatus_F_contig1462:14067..15308 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1462 14068..15308 + |
| 1695995762.5359204-UTR-E-fasciculatus_F_contig1462:14067..15308 | 1695995762.5359204-UTR-E-fasciculatus_F_contig1462:14067..15308 | Ectocarpus fasciculatus Ec846f_Ec191_B4_f female | UTR | E-fasciculatus_F_contig1462 14068..15308 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1462.3328.1 >prot_E-fasciculatus_F_contig1462.3328.1 ID=prot_E-fasciculatus_F_contig1462.3328.1|Name=mRNA_E-fasciculatus_F_contig1462.3328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
MQVRKGWMLALAFLCSCLLNPGVASSSSASATPSPASTPSPASTPSPGAT
PSPGATPSPGGTPAPTGGTPSPGGSSSSSSTSSTSSSSSSSSSTSRGTVV
AWALFTVLFGVALLMFLYNREQNKRLRARHGDFLRQSLASSDTMNPPYHQ
AEQLPGHKPDPTMSSF* back to topmRNA from alignment at E-fasciculatus_F_contig1462:11273..15308+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1462.3328.1 ID=mRNA_E-fasciculatus_F_contig1462.3328.1|Name=mRNA_E-fasciculatus_F_contig1462.3328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4036bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1462:11273..15308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGTTCGGAAAGGATGGATGCTGGCACTGGCATTCTTGTGTAGCTG
TCTCCTCAACCCAGGGTGAGTTCAGAGGTCGTGTGCATGGTTGAATTAGT
ATTGCACGAGCTCCTCCATTTTTAAACCGTGCGGTGCAATTCGAAAACCG
TGCACTGCTGCTGTGCACTGCTTGCTCTCTGTGATCGTAGACCCAGAGGG
CGAAAGAGTGGCCAGCGAACAATGCCGCTCACATTCCATTACTATCGAGT
AGCGAGCGACAAAACTATCGACGCCTTCTCTCACCCGTGATGCTGCGTGT
GTGGTGTCAGAAAATCGCGGGATATCACGACGTGCAATGCAGTTGCTCTT
AGCCGCGTACCGTCTTCACACGCATTTACCACTGAACCATGTGAATATGT
GAATGTTCATCTGTTTCTCTGCCCTCGGCTGTACACTAGCGCGATGCTGC
ACACACTTAAAAATTCCCGTCCGTCTATTTGATTTGTTTTATGTGCTGCA
CAACGAAATACTCTATGAGACCTGAGACCGCCGACCATCTTTCGCGTGTG
GTGATATTCGGCGTTCCACCGTCGGTGATTTTGTATTTTTTTGTTTTTTG
CCTCTGTTGGTGGTGCGCACGCAACTGAAATGTGGCATCACATCAAGCCA
ACAATCCTACTGGAGTCTTTACCACGCTGTAGTACGGCGAAGACCTTGCG
CCCGCAATTACGCGTGAAGGTTTTAGGTTTTCTCAAACCCATCTGAGAGC
AGATGCTCAGCGTCTTCCTTTTCTGCTGCGGTTGCGAGTCGGCTGTTTGT
CAGCTGGTATTGACGACGTCCTCGAGAGCACAACGTCCCGCCGTGCTGAT
GTTGTGGGATTGCAGCAGTTGTTTCCGCAGCTGGTTTACAAAGCACCTAC
CGGCTGACCTTATCACAAATCGGGCTCAGCCTATCTTTCCTACGCGGAGC
CAAGGCGGAGAAATAGCTTATGGCTGTGGAGTACGCGCAGAGGCCATGTA
CTTTCAAGCTTCTTTCGTTTTGTATGCAGTAGTCTACAAAGCGAAAATTG
ACTCAGCAAACATATAGGATAAAGTATTCAATCCGCGCTTTGGTGTTAGG
GTCTGCGTGCCCGTCCCTATTAATTTCCTAGTATTCTTAAAATACTGCGT
AGGCGGTCCTTTGTATGCTACCACAGAGCCCGTTATTCTTGCCACGAGCT
TGGTTGGTGGTGCGGGAAGGTCGATATTCGATACTCTTCACTCTACGTCT
AATGTAGCCTGCTCCTGGACAACCGGCCTCCACTTTGAGCTGTTGTTTCG
ACCACAAGCACACACTTGTTAGAACATTATGAACTGATCACTAACGTACG
CTGGACTCTACTCTGGAACTAGGTACGGCAGTAGCGCCGATCTTTCTCTT
GGCCGTGGATTCGTGGATTCAATAAGGAAGAGACTTTCTCACCTGCAGTT
GTCGTATCGGACAACACCGACTGCTGCCTGTGCTCGGCAAGTCAGTTTGT
AAAGCATCTCACGCAACCAACGACATGCTCAAGTGGATGAGAGAACGTAT
GAGTCAGCCTCTCGAAAACCCTTTTGGTCAATCCGTGTCTCTCCGGCACG
CTCTGGTCCACCTTGACCAGAAAAGGTCGCGCCGCGGCAGTCAAACATCC
CTGTGCTCTGCTCCTGCACACCTATGGTTTATCTACGAAAGGGTCTAGCG
GGTTCGCGACGAGTCCGACTAAGTACAGCGCCACCTGTGTTGCCGACTCT
CCCCGTCGCTAACAAGCGATCAACTACCGATGCATGGTGGCAACGTAAAT
GCACGTATTTTTCGGCGCAAGAAACTTTTCCCTCTCCACGGTATCTGCGA
CACTACAATATCGATACAACATCAATTCTCCACGTCGCCCTTTTTTGTCT
CGTTGAGCAGGGTGGCATCATCATCAAGCGCGAGTGCCACCCCTTCCCCC
GCGTCGACGCCGAGCCCAGCGTCGACACCCAGCCCCGGGGCGACACCTAG
CCCCGGGGCGACACCAAGCCCCGGCGGCACGCCGGCACCGACCGGCGGCA
CGCCGTCCCCAGGAGGGTCGTCGAGCAGCAGCAGTACCAGCAGTACCAGC
AGCAGCAGCAGCAGCAGCAGCAGCACAAGCAGGGGGACCGTGGTGGCGTG
GGCGCTCTTCACCGTGTTGTTCGGCGTGGCGCTCTTGATGTTCCTGTACA
AGTGAGAAAGCGGCACCTGGCGTAGCGTAGACAAGTTGAGGGTGGCGGGT
TGGTTAACGGTCTTGGCTGGGTATGGGTTGCTTGTTTGGTTTCGCTCGTT
GTGAATAGTGATAGCGGTGAGAGAGTCGCGCGGAGGTCGGCGCGGCTGCG
GTGGCTTGTTTTTCGGGTGCGGCTCTTGCAAGTGGCAAGAGAACGGCGCA
GTGTCCGGAAGGAGAGCGCGAGGGACAGATCTGGCTACATGCAGAGAATA
CGCCGCGCTTGAGCACGGTGACAGGGAAGAAGGGCGTCGAACGGAGTTTT
GGGAAGAATTGATTTTCAATTGAGCTGGTATGGTAACTGGACACTAACCG
CTGCTGACATCCTCTCATCTCTTCCCCGCCCTTCCGCCCGCCCTTTTGCT
CTCCTTGCCTTTGTGTTGTCGACTTCCAATCGCGATCGCACATGATTCAG
TCGCGAGCAAAACAAGAGATTGCGGGCACGGCACGGGGATTTCCTTCGAC
AGAGTCTGGCGTCGTCTGACACCATGAACCCACCGTATCACCAAGCAGAG
CAACTGCCGGGGCACAAGCCGGATCCCACGATGTCTTCGTTTTAATATCG
TACTTTGCATAGTGTAGGTCGGACGTTCCCTGTTGACAATATGGTTGATT
CGCGGGCTGTGTCTGGGTGGCTTGGTGAAGTGTGTTTTTCGTTGATCGGT
TTGTCGAGTTTCACCGGTTGGGTGAATGAAGGCACCCAACAGAATAACCA
TCGGTCGAACTTCAGTATAATGCTTTTGTGCTTGCGTGGTTGCTCTTTTT
GCTATTTTTATTCCCTGCGGTGTATCGGCGGCGTTGCGTGTTCTACATTG
TTGTCGTGTCGCCTTCTCTTGATTTTGTTACTTCGTCATCATGCAGACGT
TTTGCTGGCAGCCTGTGAAATCATGTTCCCGGTGAAACGAGCAGATTCGT
CCCATGTTGGGGGATTGTTTTCCTTGCTCACCTTCTCCAGTTTCGTGGAA
GTTGTTGTGTTGTATTTGTGTGGTCAAAGCATCGGCTTCCCATTTCAAGT
GAAGAGGTTTGCTCTCATCTGTCCTGGTTTTTGAATAGCGGTGTTGCCGA
CCATCTCGCTAAATGCGATCGTATCCCGGCGCGCCTCCCTGATACGAACA
GGTTGAATCGCTCCTCCGTTCACGTGTGTGGGCTCGGCGATAGTCTCTGT
GGCCTGTGTGTCGCTGGATGTTGTTGCGTGACTCATTACGAAGCAGCTGT
ATGTGCTGGTGAGTATGTCTGGAGACTAAAACGTGGACGGGGTGAAAGTT
GGTCTCTCACAGGTTCGACTGCTGCACCCAACTTCGAGTTGTTATACTTG
AGTATAAGAGAAGAGCGCAATCGTGAGCTAAGCGTTCATATTGAAGTCCC
TCATTCCGGCAACAACCCTTGCTGTTGTATCGTGCCTGCTCTGTTCTACA
TGTACCTCCGTCAATGACTTCCTCGTGCACCATGTCGGTACTCATGCTGA
CAAGCCTGCCGCCGGCAAGAGTACCCTTGGTTGAATGTCCACAAGAAAAG
CACCCGTTGATTGTGGGTGCAACCAATTTCAAATTCCCTGATGGTGTTGA
CAGATATGGATATTGATTGGGCATGTGCTGCATACGCGCTCCTGTTTGCG
TCGCGTTGGGCATCTAGATGTATGTGTGTGTACATGCAAGAGAGCGGGGT
TGGTCAAGGCATACATCGTTCAGGCAGTGCCGTGCGAGTTACCGTAAGGT
TGCGGGTTAGCGCACCCCCGTGCGGTCGTTTTTTAAACAGTTTCGCTATT
AAATTTTCATCGCACCCCTGTGCGATGACTCTGGAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1462:11273..15308+ >mRNA_E-fasciculatus_F_contig1462.3328.1 ID=mRNA_E-fasciculatus_F_contig1462.3328.1|Name=mRNA_E-fasciculatus_F_contig1462.3328.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1462:11273..15308+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGGTTCGGAAAGGATGGATGCTGGCACTGGCATTCTTGTGTAGCTG
TCTCCTCAACCCAGGATGCAGGTTCGGAAAGGATGGATGCTGGCACTGGC
ATTCTTGTGTAGCTGTCTCCTCAACCCAGGGGTGGCATCATCATCAAGCG
CGAGTGCCACCCCTTCCCCCGCGTCGACGCCGAGCCCAGCGTCGACACCC
AGCCCCGGGGCGACACCTAGCCCCGGGGCGACACCAAGCCCCGGCGGCAC
GCCGGCACCGACCGGCGGCACGCCGTCCCCAGGAGGGTCGTCGAGCAGCA
GCAGTACCAGCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAAGC
AGGGGGACCGTGGTGGCGTGGGCGCTCTTCACCGTGTTGTTCGGCGTGGC
GCTCTTGATGTTCCTGTACAAGGTGGCATCATCATCAAGCGCGAGTGCCA
CCCCTTCCCCCGCGTCGACGCCGAGCCCAGCGTCGACACCCAGCCCCGGG
GCGACACCTAGCCCCGGGGCGACACCAAGCCCCGGCGGCACGCCGGCACC
GACCGGCGGCACGCCGTCCCCAGGAGGGTCGTCGAGCAGCAGCAGTACCA
GCAGTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAAGCAGGGGGACC
GTGGTGGCGTGGGCGCTCTTCACCGTGTTGTTCGGCGTGGCGCTCTTGAT
GTTCCTGTACAATCGCGAGCAAAACAAGAGATTGCGGGCACGGCACGGGG
ATTTCCTTCGACAGAGTCTGGCGTCGTCTGACACCATGAACCCACCGTAT
CACCAAGCAGAGCAACTGCCGGGGCACAAGCCGGATCCCACGATGTCTTC
GTTTTAATCGCGAGCAAAACAAGAGATTGCGGGCACGGCACGGGGATTTC
CTTCGACAGAGTCTGGCGTCGTCTGACACCATGAACCCACCGTATCACCA
AGCAGAGCAACTGCCGGGGCACAAGCCGGATCCCACGATGTCTTCGTTTT
AA back to top
|