mRNA_E-fasciculatus_F_contig14618.3326.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.180e-44 Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQP---------QIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
DGAPKLGWHDTIAYMTIP+ILVITQSISTRIMQP KDPSQP IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQ+
Sbjct: 262 DGAPKLGWHDTIAYMTIPIILVITQSISTRIMQPAKDPSQPVDESQAASQNIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQI 354
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S3CUE8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CUE8_9SPIT) HSP 1 Score: 114 bits (284), Expect = 5.350e-30 Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK---DPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIR 255
DG P +GWHD I+Y+ +P++LVI+QS+S RIMQP + DP+Q Q I+KFLPLMIGWFSL+VPS L LYWI NNF++TA SVF+R
Sbjct: 1 DGHPPIGWHDAISYLILPILLVISQSVSQRIMQPQQQTTDPAQQQTQAILKFLPLMIGWFSLNVPSGLTLYWITNNFLTTAQSVFLR 87
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S1FKR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKR9_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.460e-29 Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ------IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
DGAP LGW DTIA+++IPLIL++ Q++ST++MQPPK+P P ++K LPL+IGWFSL+VPSALG+YWI N +ST ++V I+N +
Sbjct: 289 DGAPSLGWEDTIAFLSIPLILIVLQAVSTQLMQPPKNPDDPNDPSNNVVLKALPLLIGWFSLNVPSALGIYWITNTLVSTLSTVLIKNSL 378
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A835YLS0_9STRA (Alb3-like protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA) HSP 1 Score: 115 bits (288), Expect = 1.270e-28 Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK------DPSQPQIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
+G P LGWHDT+ Y++IP+ILVITQSIS +++ PPK D SQ I+K+LPL+IGWFSL+VPS LGLYWI+NN +STA SV IR Q+
Sbjct: 251 NGVPALGWHDTLCYLSIPVILVITQSISQQLISPPKKEGAEADTSQ-AILKYLPLLIGWFSLNVPSGLGLYWIVNNIVSTAASVLIRQQL 339
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A6V2GN73_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GN73_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.530e-27 Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 1
Query: 7 RPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPP-KDPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQVR 267
R DG P LGW +T+A++ IP+ILVI+Q +S ++MQP +DP Q Q I+KFLPLMIG+FSLSVP+ALG+YW+ NNF++TA ++ +RN ++
Sbjct: 70 RVDGTPSLGWDNTVAFLAIPVILVISQFVSMQLMQPKSEDPQQQQANAILKFLPLMIGYFSLSVPAALGIYWVTNNFVTTAITLSVRNSLK 160
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: R7QEJ8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ8_CHOCR) HSP 1 Score: 108 bits (271), Expect = 1.650e-27 Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 4 PRPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ----IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
P +GAP +GWHD + Y+ +P+ILV +Q S +++QPP D Q Q I+KF+PL+IGWFSL+VPS LG+YW+ NN +STA +V+IR+Q+
Sbjct: 94 PLVNGAPPIGWHDALCYLILPVILVASQFYSQKLIQPPSDDPQQQQTAKILKFMPLLIGWFSLNVPSGLGVYWVTNNLLSTAQTVYIRSQL 184
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S0L494_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L494_9EUKA) HSP 1 Score: 108 bits (269), Expect = 2.120e-27 Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKD-PSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
DGAP LGW DT++Y+ +P++LVI+Q ST ++ P D P+Q Q I+KFLPLMIGWFSL+VPS LGLYWI NN ++TAT++ IR V
Sbjct: 20 DGAPPLGWSDTLSYLVLPVLLVISQYASTSLLTPKSDDPAQAQSQAILKFLPLMIGWFSLNVPSGLGLYWITNNVVTTATTLLIRRSV 107
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A4D9CYJ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYJ8_9STRA) HSP 1 Score: 111 bits (277), Expect = 3.000e-27 Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKD-PSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQ 261
DG P LGWHDTIA++TIP+IL++TQSIS R++ PP D P Q ++K+LP+M+G+FSLSVPS LG+YWI NN ISTA S+ I+ +
Sbjct: 213 DGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPSDDPKTAQTQRVLKYLPIMVGYFSLSVPSGLGVYWITNNLISTAISISIKEK 299
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: K0SWS0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWS0_THAOC) HSP 1 Score: 109 bits (273), Expect = 3.040e-27 Identity = 48/88 (54.55%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ----IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
DG P LGW DTIA+++IP+ LVI+Q +S +MQP D Q Q I+K LP M+GWF+L+VPSALG+YW++NN ++TAT+++IRN +
Sbjct: 121 DGVPSLGWEDTIAFLSIPIFLVISQFVSMNLMQPKSDDPQQQQANIILKVLPFMVGWFALNVPSALGIYWVVNNVVTTATTLYIRNSM 208
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S0XYI9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYI9_HEMAN) HSP 1 Score: 112 bits (280), Expect = 3.310e-27 Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK--DPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQVR 267
DGAP LGW DT+AY+++P+ILV+TQ+IS +++QPP+ DP+Q Q I+KFLPLMIGWF+L+VP+ LG+YW++NN +ST +IR Q +
Sbjct: 308 DGAPPLGWEDTLAYLSLPVILVVTQTISQKLLQPPQSDDPAQQQTQAILKFLPLMIGWFALNVPAGLGVYWVINNGLSTLQQWYIRQQFK 397 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14618.3326.1 >prot_E-fasciculatus_F_contig14618.3326.1 ID=prot_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp LPRPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQIVKFback to top mRNA from alignment at E-fasciculatus_F_contig14618:93..972+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14618.3326.1 ID=mRNA_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=880bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14618:93..972+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14618:93..972+ >mRNA_E-fasciculatus_F_contig14618.3326.1 ID=mRNA_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14618:93..972+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |