mRNA_E-fasciculatus_F_contig14618.3326.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14618.3326.1
Unique NamemRNA_E-fasciculatus_F_contig14618.3326.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: D8LUC7_ECTSI (Alb3 homolog, thylakoidal inner membrane insertase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC7_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.180e-44
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQP---------QIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            DGAPKLGWHDTIAYMTIP+ILVITQSISTRIMQP KDPSQP          IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQ+
Sbjct:  262 DGAPKLGWHDTIAYMTIPIILVITQSISTRIMQPAKDPSQPVDESQAASQNIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQI 354          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S3CUE8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CUE8_9SPIT)

HSP 1 Score: 114 bits (284), Expect = 5.350e-30
Identity = 55/87 (63.22%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK---DPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIR 255
            DG P +GWHD I+Y+ +P++LVI+QS+S RIMQP +   DP+Q Q   I+KFLPLMIGWFSL+VPS L LYWI NNF++TA SVF+R
Sbjct:    1 DGHPPIGWHDAISYLILPILLVISQSVSQRIMQPQQQTTDPAQQQTQAILKFLPLMIGWFSLNVPSGLTLYWITNNFLTTAQSVFLR 87          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S1FKR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKR9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.460e-29
Identity = 51/90 (56.67%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ------IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            DGAP LGW DTIA+++IPLIL++ Q++ST++MQPPK+P  P       ++K LPL+IGWFSL+VPSALG+YWI N  +ST ++V I+N +
Sbjct:  289 DGAPSLGWEDTIAFLSIPLILIVLQAVSTQLMQPPKNPDDPNDPSNNVVLKALPLLIGWFSLNVPSALGIYWITNTLVSTLSTVLIKNSL 378          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A835YLS0_9STRA (Alb3-like protein, thylakoidal inner membrane insertase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.270e-28
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK------DPSQPQIVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            +G P LGWHDT+ Y++IP+ILVITQSIS +++ PPK      D SQ  I+K+LPL+IGWFSL+VPS LGLYWI+NN +STA SV IR Q+
Sbjct:  251 NGVPALGWHDTLCYLSIPVILVITQSISQQLISPPKKEGAEADTSQ-AILKYLPLLIGWFSLNVPSGLGLYWIVNNIVSTAASVLIRQQL 339          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A6V2GN73_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GN73_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.530e-27
Identity = 51/91 (56.04%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    7 RPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPP-KDPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQVR 267
            R DG P LGW +T+A++ IP+ILVI+Q +S ++MQP  +DP Q Q   I+KFLPLMIG+FSLSVP+ALG+YW+ NNF++TA ++ +RN ++
Sbjct:   70 RVDGTPSLGWDNTVAFLAIPVILVISQFVSMQLMQPKSEDPQQQQANAILKFLPLMIGYFSLSVPAALGIYWVTNNFVTTAITLSVRNSLK 160          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: R7QEJ8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ8_CHOCR)

HSP 1 Score: 108 bits (271), Expect = 1.650e-27
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    4 PRPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ----IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            P  +GAP +GWHD + Y+ +P+ILV +Q  S +++QPP D  Q Q    I+KF+PL+IGWFSL+VPS LG+YW+ NN +STA +V+IR+Q+
Sbjct:   94 PLVNGAPPIGWHDALCYLILPVILVASQFYSQKLIQPPSDDPQQQQTAKILKFMPLLIGWFSLNVPSGLGVYWVTNNLLSTAQTVYIRSQL 184          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S0L494_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L494_9EUKA)

HSP 1 Score: 108 bits (269), Expect = 2.120e-27
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKD-PSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            DGAP LGW DT++Y+ +P++LVI+Q  ST ++ P  D P+Q Q   I+KFLPLMIGWFSL+VPS LGLYWI NN ++TAT++ IR  V
Sbjct:   20 DGAPPLGWSDTLSYLVLPVLLVISQYASTSLLTPKSDDPAQAQSQAILKFLPLMIGWFSLNVPSGLGLYWITNNVVTTATTLLIRRSV 107          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A4D9CYJ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYJ8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.000e-27
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKD-PSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQ 261
            DG P LGWHDTIA++TIP+IL++TQSIS R++ PP D P   Q   ++K+LP+M+G+FSLSVPS LG+YWI NN ISTA S+ I+ +
Sbjct:  213 DGVPALGWHDTIAFLTIPVILILTQSISQRLLTPPSDDPKTAQTQRVLKYLPIMVGYFSLSVPSGLGVYWITNNLISTAISISIKEK 299          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: K0SWS0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SWS0_THAOC)

HSP 1 Score: 109 bits (273), Expect = 3.040e-27
Identity = 48/88 (54.55%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQ----IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQV 264
            DG P LGW DTIA+++IP+ LVI+Q +S  +MQP  D  Q Q    I+K LP M+GWF+L+VPSALG+YW++NN ++TAT+++IRN +
Sbjct:  121 DGVPSLGWEDTIAFLSIPIFLVISQFVSMNLMQPKSDDPQQQQANIILKVLPFMVGWFALNVPSALGIYWVVNNVVTTATTLYIRNSM 208          
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Match: A0A7S0XYI9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XYI9_HEMAN)

HSP 1 Score: 112 bits (280), Expect = 3.310e-27
Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   13 DGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPK--DPSQPQ---IVKFLPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQVR 267
            DGAP LGW DT+AY+++P+ILV+TQ+IS +++QPP+  DP+Q Q   I+KFLPLMIGWF+L+VP+ LG+YW++NN +ST    +IR Q +
Sbjct:  308 DGAPPLGWEDTLAYLSLPVILVVTQTISQKLLQPPQSDDPAQQQTQAILKFLPLMIGWFALNVPAGLGVYWVINNGLSTLQQWYIRQQFK 397          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14618.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUC7_ECTSI1.180e-4486.02Alb3 homolog, thylakoidal inner membrane insertase... [more]
A0A7S3CUE8_9SPIT5.350e-3063.22Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A7S1FKR9_9STRA6.460e-2956.67Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A835YLS0_9STRA1.270e-2862.22Alb3-like protein, thylakoidal inner membrane inse... [more]
A0A6V2GN73_9STRA1.530e-2756.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
R7QEJ8_CHOCR1.650e-2752.75Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0L494_9EUKA2.120e-2759.09Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A4D9CYJ8_9STRA3.000e-2759.77Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K0SWS0_THAOC3.040e-2754.55Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0XYI9_HEMAN3.310e-2756.67Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14618contigE-fasciculatus_F_contig14618:93..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue9.7e-37
Seed eggNOG ortholog2880.D8LUC7
Preferred nameALB3.1
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019904,GO:0022607,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045038,GO:0045184,GO:0046907,GO:0050789,GO:0050793,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051291,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0065003,GO:0065007,GO:0070206,GO:0070208,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0090150,GO:0090342
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlb3 homolog, thylakoidal inner membrane insertase
Ec32 orthologEc-14_004480.1
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.3830783-CDS-E-fasciculatus_F_contig14618:92..2271622927948.3830783-CDS-E-fasciculatus_F_contig14618:92..227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14618 93..227 +
1695995762.3956423-CDS-E-fasciculatus_F_contig14618:92..2271695995762.3956423-CDS-E-fasciculatus_F_contig14618:92..227Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14618 93..227 +
1622927948.397616-CDS-E-fasciculatus_F_contig14618:840..9721622927948.397616-CDS-E-fasciculatus_F_contig14618:840..972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14618 841..972 +
1695995762.4069748-CDS-E-fasciculatus_F_contig14618:840..9721695995762.4069748-CDS-E-fasciculatus_F_contig14618:840..972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14618 841..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14618.3326.1prot_E-fasciculatus_F_contig14618.3326.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14618 93..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14618.3326.1

>prot_E-fasciculatus_F_contig14618.3326.1 ID=prot_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
LPRPDGAPKLGWHDTIAYMTIPLILVITQSISTRIMQPPKDPSQPQIVKF
LPLMIGWFSLSVPSALGLYWILNNFISTATSVFIRNQVR
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mRNA from alignment at E-fasciculatus_F_contig14618:93..972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14618.3326.1 ID=mRNA_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=880bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14618:93..972+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCGAGGCCAGACGGGGCGCCGAAGCTGGGCTGGCACGACACCATCGC GTACATGACCATCCCCCTCATCCTGGTCATCACACAGTCCATCTCCACGC GGATCATGCAGCCGCCCAAGGACCCCTCCCAGCCGGTCGACGAGTCGCAG GCAGCGTCGCAGAATGCAAGTCTTTGGTTCTTTTCACGCCCGCGGGAGAG GGTTACGGCGACGGGGTGCTCGCTGTTGGTAGGGGGGGGGGGGGGGGTCT GCTTCGGGCGGGGAGGAATCGAGTAGGGCACATAAACAGTGCTGCGCCAA AATCGGAACATCTAGATTGAATGGGGTGGAGGGGGAGACTACGCAGAATC CCAGAAAAATCTTTAGGAGGCGGGGGGGGGAGGGACAGCATGCCGAGATT CCGTGAGAAGCCAGCAGACTGGCCCCTTAGCTATCATGTGAAGGGCACGT TTGCACGAGCAGTACGGAGCGAAGTTTTTGCCCGTATTGTTGCCATTCGC TGCTGTTTGCGGTTGTGGGGCGCGTCGGGCACATGTTTCAGCTCGCGACC CGGAGACTCGAAAAATGCACTAGACAAATTTGATGGTATCGGCCTGTTCG TCTGTAGATCCCGTGCTCTTGCCGTCCCTTCACTCCGGCTGACTTCCGCT GTCGAAGGCGTTTTTTTGTTGTTGCTCCAAGAGCTGTCTTCTTTTCTCAA ACGACCCCCGTTTCCCGTCCGGCCCGATCACCAACTTCGCGTCACAAGCA GATCGTCAAGTTTTTGCCGCTGATGATCGGATGGTTCTCGCTCAGCGTCC CTTCGGCTCTCGGGCTTTACTGGATCCTCAACAACTTCATCTCTACGGCA ACGTCGGTGTTCATCCGCAACCAGGTCAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14618:93..972+

>mRNA_E-fasciculatus_F_contig14618.3326.1 ID=mRNA_E-fasciculatus_F_contig14618.3326.1|Name=mRNA_E-fasciculatus_F_contig14618.3326.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14618:93..972+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCGAGGCCAGACGGGGCGCCGAAGCTGGGCTGGCACGACACCATCGC
GTACATGACCATCCCCCTCATCCTGGTCATCACACAGTCCATCTCCACGC
GGATCATGCAGCCGCCCAAGGACCCCTCCCAGCCGCTGCCGAGGCCAGAC
GGGGCGCCGAAGCTGGGCTGGCACGACACCATCGCGTACATGACCATCCC
CCTCATCCTGGTCATCACACAGTCCATCTCCACGCGGATCATGCAGCCGC
CCAAGGACCCCTCCCAGCCGCAGATCGTCAAGTTTTTGCCGCTGATGATC
GGATGGTTCTCGCTCAGCGTCCCTTCGGCTCTCGGGCTTTACTGGATCCT
CAACAACTTCATCTCTACGGCAACGTCGGTGTTCATCCGCAACCAGGTCA
GACAGATCGTCAAGTTTTTGCCGCTGATGATCGGATGGTTCTCGCTCAGC
GTCCCTTCGGCTCTCGGGCTTTACTGGATCCTCAACAACTTCATCTCTAC
GGCAACGTCGGTGTTCATCCGCAACCAGGTCAGA
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