mRNA_E-fasciculatus_F_contig14615.3325.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14615.3325.1
Unique NamemRNA_E-fasciculatus_F_contig14615.3325.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A6H5L488_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L488_9PHAE)

HSP 1 Score: 469 bits (1206), Expect = 7.440e-163
Identity = 233/250 (93.20%), Postives = 239/250 (95.60%), Query Frame = 1
Query:    1 LPGPSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLPKSVGADP 750
            +P P  IPSVDVFSTKAS+LGL+SNDTIVVY K+GSFSAPRCWWTFR FGHERVHVLNGGF AWE+AGGSVERGEV PVSTRPSSGLVQTSGNAWMLRSKGFQGRLNA MLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSAC+PF KVL DGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAE SPVYDGSWSEWGSRADLPKSVGADP
Sbjct:  138 VPLPHMIPSVDVFSTKASELGLSSNDTIVVYTKKGSFSAPRCWWTFRAFGHERVHVLNGGFPAWESAGGSVERGEVTPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAAMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACLPFTKVLADGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAELSPVYDGSWSEWGSRADLPKSVGADP 387          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A836CBP8_9STRA (Rhodanese-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP8_9STRA)

HSP 1 Score: 315 bits (807), Expect = 1.700e-103
Identity = 152/243 (62.55%), Postives = 181/243 (74.49%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLPKSV 738
            P  +PS  VFS K S +G+ ++ ++VVYA +GSFSA RCWWTF+ FGH+ VHVL+GG  AW  AGG++E GEVK    RPS GLVQ SGN W+L  K F+  L   MLRTWRQVL  S      +GQ+VDARS+ARFKAEAPEPR G+AGGH+PGS CVPF +VL+ GD   F+S EEIR+ F+ AG+DVDSP P+ T+CGSGVTAAVLT+AL LAGR    SPVYDGSWSEWG R DLPK  
Sbjct:   68 PHMLPSAGVFSDKVSAMGIGNDQSVVVYAAEGSFSAARCWWTFKVFGHDAVHVLDGGLPAWVGAGGALEEGEVKGQDIRPSRGLVQKSGNTWLLNQKAFKATLRPQMLRTWRQVLDAST---ARSGQIVDARSMARFKAEAPEPRPGLAGGHIPGSLCVPFTEVLMTGDWTRFKSSEEIREVFQSAGIDVDSPDPLITSCGSGVTAAVLTMALHLAGRDCTTSPVYDGSWSEWGGRDDLPKET 307          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A4D9CV14_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV14_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.110e-71
Identity = 122/249 (49.00%), Postives = 153/249 (61.45%), Query Frame = 1
Query:    4 PGPSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQ----VVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDV---DSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P P  +PS   FS   S LGL + D IVVY  Q  FSA RCWWTFR FGHE+V++L GG  AW+AAGG  E G  +   +RP  GLV+  GNAW+L+ +GFQ +L A ++ +W+QVL   E G+EA GQ    + DAR   RF AE  EPR G+A GH+PGS  VPF +V  +GD   FR P ++ K F   GVDV        + TTCGSGVTAA L+ A+ LAG      PV+D SW+ WG    +P
Sbjct:   71 PFPHMLPSATAFSEAVSALGLENKDEIVVYTTQKCFSAARCWWTFRAFGHEKVYILQGGLPAWQAAGGKTETGPAQARPSRPPRGLVEQGGNAWLLQKQGFQAKLQADLVYSWQQVLKVVE-GEEAEGQKHHWIADARGPPRFNAEVDEPRPGLARGHIPGSVNVPFDRVFEEGDWTRFRRPADVVKVFVAQGVDVRALSKERKVITTCGSGVTAAALSFAMVLAGADVAAVPVFDASWAAWGQLKGVP 318          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: W7TBX7_9STRA (3mercaptopyruvate sulfurtransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBX7_9STRA)

HSP 1 Score: 226 bits (576), Expect = 3.090e-67
Identity = 119/240 (49.58%), Postives = 150/240 (62.50%), Query Frame = 1
Query:    4 PGPSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQ----VVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDS---PLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWS 702
            P P  +PS   FS   S LGL + D IVVY  Q  FSA RCWWTFR FGHE+V++L GG  AW+AAGG  E G  +   +RP  GLV+  GNAW+L+ +GFQ +L A ++ +W+QVL   E G+EA GQ    + DAR   RF A+  EPR G+A GH+PGS  VPF +V  +GD   FR P E+ + F   GVDV S      + TTCGSGVTAA L+ A+ LAG      PV+D SW+
Sbjct:  154 PFPHMLPSATAFSEAVSALGLENKDEIVVYTTQKCFSAARCWWTFRAFGHEKVYILQGGLPAWQAAGGKTETGPAQARPSRPPRGLVEQGGNAWLLQKQGFQAKLQADLVYSWQQVLKVVE-GEEAEGQKHHWIADARGPPRFNADVDEPRPGLARGHIPGSVNVPFDRVFEEGDWTRFRRPAEVVEVFAAQGVDVRSLSKERKVITTCGSGVTAAALSFAMVLAGADVTAVPVFDASWA 392          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A7S2W7I0_9STRA (Sulfurtransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7I0_9STRA)

HSP 1 Score: 207 bits (527), Expect = 6.560e-61
Identity = 109/247 (44.13%), Postives = 153/247 (61.94%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAG-QVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAER-SPVYDGSWSEWGSRADLPKSVGA 744
            P  +P  D FS     LGL+ +DTIV Y   GSFSA R WW F+ FGHE VH++NGG  AW+ AGGSVE G        P++    T           ++ +L + ++++W +VL+ S++ ++    +++DAR   RF+ +APEPR G+  GH+P S C+PF  +L +GDV  F+S EE+R  F   GV   S   +TTTCGSGVTA V++ AL+LA  + E  + VYDGSW+EWG R+DLPK  G+
Sbjct:  105 PHMLPCEDQFSEACGSLGLSEDDTIVCYTAPGSFSAARAWWMFKAFGHEHVHIMNGGLQAWKDAGGSVESGS-------PAAPPRAT-----------YRPQLQSSLVKSWSEVLATSKRAQDGGNVKILDARGRPRFEGKAPEPRPGLESGHIPNSMCLPFQDLLEEGDVTRFKSTEELRSYFSAIGVTGQSE--VTTTCGSGVTACVISFALQLAFPERESIASVYDGSWTEWGGRSDLPKETGS 331          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: M4BU96_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BU96_HYAAE)

HSP 1 Score: 204 bits (520), Expect = 1.630e-60
Identity = 104/240 (43.33%), Postives = 144/240 (60.00%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P  +P+   F     DLG+ ++DT+VVY  +  FS  RCWWTF+ FGH+ VH+LNGG T W      VE GE++ V                 +    ++ + N  ++ +W  VL++   G +   Q+VDAR  ARF A+ PEPR G+ GGH+PGS  +PF K++   D + FR   +I+ AF +A V +D   PI T+CGSGVTA+VLT  L L G+  E++PVYDGSWSEWG R+DLP
Sbjct:   65 PHMLPTAKTFEHAMRDLGVENDDTVVVYGGRNCFSPARCWWTFKVFGHDSVHILNGGITKWMKEKRRVETGELQKV-----------------VAGSPYKAQFNEALVVSWEDVLAKI--GSDT--QIVDARGAARFYAKDPEPRPGMRGGHIPGSINLPFGKIVDPEDFSLFRELADIKSAFAEANVKMDEASPIITSCGSGVTASVLTFGLHLTGKPLEKTPVYDGSWSEWGQRSDLP 283          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: H3HBJ2_PHYRM (Sulfurtransferase n=6 Tax=Phytophthora TaxID=4783 RepID=H3HBJ2_PHYRM)

HSP 1 Score: 203 bits (516), Expect = 1.160e-59
Identity = 103/240 (42.92%), Postives = 145/240 (60.42%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P  +PS++ F      LG+ ++DT++VY  +  FS  RCWWTF+ FGH+ VH+LNGG T W++    +E GE + V                 +    ++ + N  +  +W  VL++   G +   Q+VDAR  ARF A+ PEPR G+  GH+PGS  VPF K++   D + FR  +EI+ AF +A V +D   PI T+CGSGVTA+VLT  L L G+  E++PVYDGSWSEWG R+DLP
Sbjct:   85 PHMLPSLETFEHAMMYLGVENDDTVIVYGGKNCFSPARCWWTFKYFGHDSVHILNGGITKWKSEKRDIETGEPQKV-----------------VAGAAYKAKPNEALSVSWEDVLAKV--GSDT--QIVDARGAARFYAKEPEPRPGMRSGHIPGSVNVPFGKLVSPDDFSLFRELDEIKNAFAEANVKMDETSPIITSCGSGVTASVLTFGLHLTGKPLEKAPVYDGSWSEWGLRSDLP 303          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A0P1AVV1_PLAHL (Sulfurtransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVV1_PLAHL)

HSP 1 Score: 202 bits (514), Expect = 1.730e-59
Identity = 101/240 (42.08%), Postives = 143/240 (59.58%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P  +P  + F     DLG+ ++DT++VY  +  FS  RCWWTF+ FGH  VH+LNGG T W+     +E  E + V                 L    ++ +L+  ++ TW +VL + +       Q+VDAR  ARF A+ PEPR G+ GGH+PGS  VPF+ +L   D + FR  ++I++AF +A V  D   PI T+CGSGVTA+VL+  L L G+  +++PVYDGSWSEWG R+DLP
Sbjct:   75 PHMLPDPETFEDAMMDLGVENDDTVIVYGGKHCFSPARCWWTFKFFGHSSVHILNGGITKWKCEKRKIETDEPQTV-----------------LAGSRYKAQLDKDLVVTWEEVLKKID----TDTQIVDARGAARFYAKEPEPRPGMRGGHIPGSVNVPFSTLLNPTDFSLFRDLDDIKRAFAEANVKTDESSPIITSCGSGVTASVLSFGLHLIGKPLDKAPVYDGSWSEWGQRSDLP 293          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A3F2RVC0_9STRA (Sulfurtransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RVC0_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.750e-59
Identity = 103/240 (42.92%), Postives = 141/240 (58.75%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P  +P+ + F      LG+ ++DT++VY  +  FSA RCWWTF+ FGHE VH++NGG T W+     V+  E K +    S                 ++   N  ++ +W  VL++   G E   Q+VDAR  ARF AE PEPR G+  GH+PGS  VPF K++   D + FR   EI+ AF +A V +D   P+ T+CGSGVTA +LT  L L G+  E++PVYDGSWSEWG R+DLP
Sbjct:   78 PHMLPTPETFEHAMMYLGVENDDTVIVYVGKNCFSAARCWWTFKYFGHENVHIMNGGITKWKNEKRKVDLSETKKLVAGAS-----------------YKAEPNETLVMSWEDVLAKI--GSET--QIVDARGAARFHAEEPEPRPGMRSGHIPGSVNVPFGKIVSSEDFSLFRDLPEIQSAFAEANVKMDETSPVITSCGSGVTACLLTFGLHLTGKPLEKAPVYDGSWSEWGVRSDLP 296          
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Match: A0A1V9ZI12_9STRA (Sulfurtransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZI12_9STRA)

HSP 1 Score: 197 bits (502), Expect = 9.020e-58
Identity = 107/240 (44.58%), Postives = 139/240 (57.92%), Query Frame = 1
Query:   10 PSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFGHERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSKGFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAGVAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPITTTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLP 729
            P  +P+  VFS+   +LG+T++ +I+VY     FS  RCWWTF+ FGH  VHVLNGG T W+  G  +E+G   P +  PSSG V T+ +  +L ++     L+                      Q++DAR   RF  +  EPR GV  GH+PG+   PF+ VL   D ++FR P EI+K FE +GV +     I TTCGSGVTAAVLTL L L      R+PVYDGSWSEWGSR DLP
Sbjct:   67 PHMLPTESVFSSAMKNLGITNDTSIIVYGGPNCFSPARCWWTFKYFGHRDVHVLNGGMTQWKKEGRPLEQGP--PAAPTPSSGYVATADSRLVLNAEQVLALLSTE-------------------NQIIDARGPGRFLGKEAEPRPGVRSGHMPGALNTPFSHVLRSDDYSAFREPLEIQKNFEASGVRLGDTTLIATTCGSGVTAAVLTLGLHLLDVPLHRAPVYDGSWSEWGSRNDLP 285          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14615.3325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L488_9PHAE7.440e-16393.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBP8_9STRA1.700e-10362.55Rhodanese-like domain-containing protein n=1 Tax=T... [more]
A0A4D9CV14_9STRA1.110e-7149.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TBX7_9STRA3.090e-6749.583mercaptopyruvate sulfurtransferase n=2 Tax=Nannoc... [more]
A0A7S2W7I0_9STRA6.560e-6144.13Sulfurtransferase n=1 Tax=Rhizochromulina marina T... [more]
M4BU96_HYAAE1.630e-6043.33Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3HBJ2_PHYRM1.160e-5942.92Sulfurtransferase n=6 Tax=Phytophthora TaxID=4783 ... [more]
A0A0P1AVV1_PLAHL1.730e-5942.08Sulfurtransferase n=1 Tax=Plasmopara halstedii Tax... [more]
A0A3F2RVC0_9STRA3.750e-5942.92Sulfurtransferase n=3 Tax=Phytophthora kernoviae T... [more]
A0A1V9ZI12_9STRA9.020e-5844.58Sulfurtransferase n=1 Tax=Achlya hypogyna TaxID=12... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14615contigE-fasciculatus_F_contig14615:354..3134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score476.9
Seed ortholog evalue6e-132
Seed eggNOG ortholog2880.D7G7N9
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG2897@1,KOG1529@2759
EC2.8.1.1,2.8.1.2
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-22_001610.1
Exons4
Model size1028
Cds size753
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14615.3325.1prot_E-fasciculatus_F_contig14615.3325.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14615 629..3134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.2801323-UTR-E-fasciculatus_F_contig14615:353..6281622927948.2801323-UTR-E-fasciculatus_F_contig14615:353..628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14615 354..628 -
1695995762.3394234-UTR-E-fasciculatus_F_contig14615:353..6281695995762.3394234-UTR-E-fasciculatus_F_contig14615:353..628Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14615 354..628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.2973187-CDS-E-fasciculatus_F_contig14615:628..8571622927948.2973187-CDS-E-fasciculatus_F_contig14615:628..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 629..857 -
1695995762.3589864-CDS-E-fasciculatus_F_contig14615:628..8571695995762.3589864-CDS-E-fasciculatus_F_contig14615:628..857Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 629..857 -
1622927948.316445-CDS-E-fasciculatus_F_contig14615:1475..16511622927948.316445-CDS-E-fasciculatus_F_contig14615:1475..1651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 1476..1651 -
1695995762.3688922-CDS-E-fasciculatus_F_contig14615:1475..16511695995762.3688922-CDS-E-fasciculatus_F_contig14615:1475..1651Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 1476..1651 -
1622927948.330682-CDS-E-fasciculatus_F_contig14615:1839..19781622927948.330682-CDS-E-fasciculatus_F_contig14615:1839..1978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 1840..1978 -
1695995762.376965-CDS-E-fasciculatus_F_contig14615:1839..19781695995762.376965-CDS-E-fasciculatus_F_contig14615:1839..1978Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 1840..1978 -
1622927948.3413494-CDS-E-fasciculatus_F_contig14615:2925..31341622927948.3413494-CDS-E-fasciculatus_F_contig14615:2925..3134Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 2926..3134 -
1695995762.3851469-CDS-E-fasciculatus_F_contig14615:2925..31341695995762.3851469-CDS-E-fasciculatus_F_contig14615:2925..3134Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14615 2926..3134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14615.3325.1

>prot_E-fasciculatus_F_contig14615.3325.1 ID=prot_E-fasciculatus_F_contig14615.3325.1|Name=mRNA_E-fasciculatus_F_contig14615.3325.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=251bp
LPGPSRIPSVDVFSTKASDLGLTSNDTIVVYAKQGSFSAPRCWWTFRTFG
HERVHVLNGGFTAWEAAGGSVERGEVKPVSTRPSSGLVQTSGNAWMLRSK
GFQGRLNAPMLRTWRQVLSQSEKGKEAAGQVVDARSLARFKAEAPEPRAG
VAGGHVPGSACVPFAKVLVDGDVNSFRSPEEIRKAFEDAGVDVDSPLPIT
TTCGSGVTAAVLTLALELAGRKAERSPVYDGSWSEWGSRADLPKSVGADP
*
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mRNA from alignment at E-fasciculatus_F_contig14615:354..3134-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14615.3325.1 ID=mRNA_E-fasciculatus_F_contig14615.3325.1|Name=mRNA_E-fasciculatus_F_contig14615.3325.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2781bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14615:354..3134- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCGGGCCCGTCCAGGATTCCTTCCGTAGATGTCTTCTCCACGAAAGC GTCGGACTTGGGCTTGACGAGCAACGACACGATCGTGGTCTACGCCAAGC AGGGCTCCTTCAGTGCCCCTCGCTGTTGGTGGACGTTCCGGACCTTCGGA CACGAGAGGGTGCACGTCCTCAACGGCGGGTTCACCGCGTGGGAAGCAGC TGGCGGCAGGTACGCCTCTGTGTCAGGTAGCGTTTGATTTATCGTGAATG TTGGTTGCGAAAGGGTTCTCCAGCGTAGGAGGGCGCAGTGAGAATCACAC GTGGGACTTGTCGTCATGCGTCACAAGAAGCATGGCGTGGCTGCAGATGC CCAGCCAACCATGTCAAGCGAAGAATTTGTTTCCCATGATGATTGGCGTG TTATTCGTCGGTTGTTTGTACAGCATCTGTTGGCGACAATAAATGGAAGG AAATTCTTTGTGTGAAGAGACGGAAAGTGCAACGTAGGATGAAACCTCAC AAGCATGTATTATCTGCGCAACGCCCACCACGAGTTCCAGCGTTTGTCAA CGCCGCAGCAATCTGATGTATGTACCATGGGCAGCAACACGCCGCGTGTT TTGTTTCAGACCGTATGCATACACCCGTACATCCGTTTTTGTGCCCGACT ACCCCAGTTTTCCATCTTTAGCTTAAACATGGCGACATGCTTCTTCACCT TTACCTTGCTCCATGCAATGTTCGTAGTCGATCGGTGCCGCGATTGATGC CCCAAACCCACGCTGTTGCCTCGTGGACACGATCCCAACCTAGTTCGGCG CCTCAGGCGCTATCAGGTTTCTTTTCAATCTTGTAAACAAGCGTTTGTGC GCGCAAGGGCACCAGCTCTCAAATCAACGGACCCACGATTGTTTTCGGTA GTTGGTGTTCCGTAAGTGCTGGTGCATCCACGTACTGCTGTGCGTGTAGG CTGGATGGATATCTCAGGGGCGGCACATGTTTGCCTTTGCTTTGTGCCCT CATCAACCAATTCAGGTTCATCAACGGCGCTTGCTGCTGTCATTTGTTGT ACACTCATGCTGTCTCGAAGCGTCCGTATCTGTGTTTTACGTGCTAATCC CATTTCGTGGCGATGTTTTCTAATCTTTCTCGGTGTTGCCCTTTCGGTTG CGTTAGCGTGGAGCGAGGCGAGGTGAAACCAGTGAGCACGCGACCATCTT CTGGCCTGGTGCAAACGTCCGGCAACGCGTGGATGTTGAGGTCCAAAGGC TTCCAGGGACGACTCAACGCGCCCATGCTAAGAACCTGGCGACAGGTAGG CCCGGGGGCTTCGAGGACAAAACGCGTATAACTCGGGACTGCCCCTTCCG CACGTTGCGCTGGGACATCCGCAGATACCTGGGGTAGTTACATCGGCAGT TTTTATTGATCAGCCAACACCATATCCACAGCCGCCGGGACCCACGATAA CGAGACCCCTGGGCGTGTTTGATGTCGTACCAGGTTCTCAGCCAGAGCGA GAAGGGCAAGGAGGCGGCCGGGCAGGTGGTAGACGCTCGATCCCTCGCGA GATTCAAGGCTGAGGCTCCAGAGCCGAGGGCGGGGGTTGCAGGGGGTCAC GTCCCTGGGTCGGCGTGCGTCCCGTTCGCCAAGGTCTTGGTGGATGGAGA CGTTAACAGGTGACAAGAAGGTTGGGCTCAAACGGGACTGGGAATTGCAA ACCGGCTGCGTGCCACCCCATCGACGTCACTTTCATTGCTGATATCGTAT TCCCGACATCAGCATGCACCATCGGAAGTAGAAAAATACGAATTGATATC TGCCGCCGCTCGTGGAAGCAAACAGATGTTTGCCACGGTCCCCCATCCAT TGGCAGCATGTAAGTGTGGGAAATCGTGCGTGAGATATGCATGGACCCGG TGGTAGAGTCATATTGACTTCAACAGAGGTTGCTCGGTTCAACGGTCGGG ATGACCAGACGCCCCCCTTTTCTCTTTTCCCACGGCGACAGAGATGTGGG GTTTCTCACCAATCTCTGCTTTGCCTAAACTGTTACCCCCTTCTCGTAGC TGAAAAGGACACCAGCGGAGAATGTGTATGCGCGCTCGTTCGCAACATGT ACTTGACACGCTCATCGCCCTCATGTGTAGGTGTTTGTACCCTGCTGCAA GCGTGACCACAGTTCTGTCGCGAAATGCCTATGCTCGTCAGCCGCATTTT TCTCATGTTCTCTCTGCCATCTCGCCTACCCCCACTGATTAATTGAACTT TCTGTTGATAACGCAACCACTCTACAGCTTTCGATCTCCCGAAGAGATTC GGAAGGCTTTTGAAGACGCAGGCGTCGACGTCGACTCTCCCCTCCCCATC ACCACGACTTGCGGATCTGGTGTTACCGCGGCGGTGCTCACATTAGCGCT CGAGCTGGCGGGGAGAAAGGCTGAACGTTCACCTGTTTACGACGGGTCAT GGTCGGAGTGGGGTTCTCGTGCCGATCTCCCAAAGTCTGTCGGCGCTGAT CCATAGTCGTGCTGCTGCTGCAACGTCTACGGTTTGGATGGACTTAGGAC CGCGAATGCTGGTTGAATACTCTGTTGGTTGGGGTTATCGAAAAACTGGG TGACGCTGCTTATCGACTGCAAATGGGTGGACAACGAGTTGTGAACTTGG AATTCAGCCCTCTCCGAACCGTCGGTTCTGGTCGGCGTGTCCATTTTTTT TGCCGTAACGAGACACCCCATGCAGATTTTGAATTTGGTGTGGTGCAGCA GCACTGGTACGTTGCTGTTTGTATCGTTGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14615:354..3134-

>mRNA_E-fasciculatus_F_contig14615.3325.1 ID=mRNA_E-fasciculatus_F_contig14615.3325.1|Name=mRNA_E-fasciculatus_F_contig14615.3325.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14615:354..3134- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCCGGGCCCGTCCAGGATTCCTTCCGTAGATGTCTTCTCCACGAAAGC
GTCGGACTTGGGCTTGACGAGCAACGACACGATCGTGGTCTACGCCAAGC
AGGGCTCCTTCAGTGCCCCTCGCTGTTGGTGGACGTTCCGGACCTTCGGA
CACGAGAGGGTGCACGTCCTCAACGGCGGGTTCACCGCGTGGGAAGCAGC
TGGCGGCAGCTCCCGGGCCCGTCCAGGATTCCTTCCGTAGATGTCTTCTC
CACGAAAGCGTCGGACTTGGGCTTGACGAGCAACGACACGATCGTGGTCT
ACGCCAAGCAGGGCTCCTTCAGTGCCCCTCGCTGTTGGTGGACGTTCCGG
ACCTTCGGACACGAGAGGGTGCACGTCCTCAACGGCGGGTTCACCGCGTG
GGAAGCAGCTGGCGGCAGCGTGGAGCGAGGCGAGGTGAAACCAGTGAGCA
CGCGACCATCTTCTGGCCTGGTGCAAACGTCCGGCAACGCGTGGATGTTG
AGGTCCAAAGGCTTCCAGGGACGACTCAACGCGCCCATGCTAAGAACCTG
GCGACAGCGTGGAGCGAGGCGAGGTGAAACCAGTGAGCACGCGACCATCT
TCTGGCCTGGTGCAAACGTCCGGCAACGCGTGGATGTTGAGGTCCAAAGG
CTTCCAGGGACGACTCAACGCGCCCATGCTAAGAACCTGGCGACAGGTTC
TCAGCCAGAGCGAGAAGGGCAAGGAGGCGGCCGGGCAGGTGGTAGACGCT
CGATCCCTCGCGAGATTCAAGGCTGAGGCTCCAGAGCCGAGGGCGGGGGT
TGCAGGGGGTCACGTCCCTGGGTCGGCGTGCGTCCCGTTCGCCAAGGTCT
TGGTGGATGGAGACGTTAACAGGTTCTCAGCCAGAGCGAGAAGGGCAAGG
AGGCGGCCGGGCAGGTGGTAGACGCTCGATCCCTCGCGAGATTCAAGGCT
GAGGCTCCAGAGCCGAGGGCGGGGGTTGCAGGGGGTCACGTCCCTGGGTC
GGCGTGCGTCCCGTTCGCCAAGGTCTTGGTGGATGGAGACGTTAACAGCT
TTCGATCTCCCGAAGAGATTCGGAAGGCTTTTGAAGACGCAGGCGTCGAC
GTCGACTCTCCCCTCCCCATCACCACGACTTGCGGATCTGGTGTTACCGC
GGCGGTGCTCACATTAGCGCTCGAGCTGGCGGGGAGAAAGGCTGAACGTT
CACCTGTTTACGACGGGTCATGGTCGGAGTGGGGTTCTCGTGCCGATCTC
CCAAAGTCTGTCGGCGCTGATCCATAGCTTTCGATCTCCCGAAGAGATTC
GGAAGGCTTTTGAAGACGCAGGCGTCGACGTCGACTCTCCCCTCCCCATC
ACCACGACTTGCGGATCTGGTGTTACCGCGGCGGTGCTCACATTAGCGCT
CGAGCTGGCGGGGAGAAAGGCTGAACGTTCACCTGTTTACGACGGGTCAT
GGTCGGAGTGGGGTTCTCGTGCCGATCTCCCAAAGTCTGTCGGCGCTGAT
CCATAG
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