mRNA_E-fasciculatus_F_contig1461.3320.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A6H5J8S6_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S6_9PHAE) HSP 1 Score: 672 bits (1733), Expect = 1.890e-231 Identity = 451/614 (73.45%), Postives = 474/614 (77.20%), Query Frame = 3
Query: 192 NQPPRQTSTKRGGGSSGYRKQAEGDRNVGLPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKAHSTSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGIRHHDSHSVAVQETKGSVDRIAIDLRAMCNRVTHLEAEMGMIKHRHELLRTESGELLRLILSEGGRRLEEKALAVLGQLPHTSGELELSELRSLGLHPEDHQQEQHXXXXXXXXXXXXTDERGPTPMPEQQPPARCRGSSFGGERFVAGGAVEDGDSSARGGGGVGAAARYSRSGAALASVVAAELASNASEEDGEADSSSTRAPSGAPHDPSRPLLGGPGREIAWAGMGPNVDLSSPSRGFATAPAFSGPAAAGSGNGAAEFGXXXXXXXXXSREGAARLSSDTAAARHGSRAPPVDDRGPSTTAWAADAXXXXXXXXSLPQGSSDMGAPRYS-LYSVRGERQQVEAGRGVARAEKRPIRGSGEGGTPGERGGGAGQNGADSSGTAVGRSKRRAV 1979
N+PP QT T RGGGSSG R QAEG RN+ +PVG+G XXXXXXXXXXXX APASFLDKLWNILNEPHLSKHITWN+DGDGI++N+PAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRK HS SA+ XXXXXXXXXXXXXXXXXXXXXX SAGIRHHDSHSV QETKGSVDRIA++LRAMCNRVTHLEAE+G+IKHRH LR ES LLRL+LSEGGRRLEEKALAVLGQLPHTSGE ELSEL LGL PEDH+Q XXXXXXXXXX D RGPTPMPE++P A RG SFGGERFVAG A EDGD +ARGGG VGAA YSRSGAALASV+AA L SNASEEDGEAD GA HDP RP LGGPGR AW GM PN+DLSSPSRG ATA FSGPA GSGNGAAEFG S EGAA LSSD AAA HGSRAPPVDDRG ST A A S PQGSS PR + LYSVRGER+QVEAGRGV R EKRP RGSGEGGTPGE GGG GQNGAD SG+ V RSKRRAV
Sbjct: 2 NKPPPQTPTSRGGGSSGGRNQAEGGRNLVVPVGSGGAATAVGAAAAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPASFLDKLWNILNEPHLSKHITWNKDGDGILINYPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKGHSMSASNXXXXXXXXXXXXXXXXXXXXXXGSP----SAGIRHHDSHSVTAQETKGSVDRIAVELRAMCNRVTHLEAEIGLIKHRHNHLRAESQVLLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSELPYLGLRPEDHEQ-----XXXXXXXXXXXDARGPTPMPEERP-AHFRGRSFGGERFVAGDAAEDGDPTARGGG-VGAAG-YSRSGAALASVIAAALVSNASEEDGEAD--------GALHDPPRPRLGGPGRGTAWGGMAPNIDLSSPSRGLATA-TFSGPATGGSGNGAAEFGGSGNASCNGSEEGAAWLSSDAAAASHGSRAPPVDDRGRSTAPVARAAEPAAAGGGSRPQGSS----PRSNYLYSVRGEREQVEAGRGVVRTEKRPNRGSGEGGTPGEWGGGGGQNGADHSGS-VARSKRRAV 589
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: D7FT89_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT89_ECTSI) HSP 1 Score: 626 bits (1614), Expect = 9.190e-214 Identity = 434/622 (69.77%), Postives = 450/622 (72.35%), Query Frame = 3
Query: 192 NQPPRQTSTKRGGGSSGYRKQAEGDRNVGLPVGAGXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------APASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKAHSTSANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGIRHHDSHSVAVQETKGSVDRIAIDLRAMCNRVTHLEAEMGMIKHRHELLRTESGELLRLILSEGGRRLEEKALAVLGQLPHTSGELELSELRSLGLHPEDHQQEQHXXXXXXXXXXXX----TDERGPTPMPEQQPPARCRGSSFGGERFVAGGAVEDGDSSARGGGGVGAAARYSRSGAALASVVAAELASNASEEDGEADSSSTRAPSGAPHDPSRPLLGGPGREIAWAGMGPNVDLSSPSRGFATAPAFSGPAAAGSGNGAAEFGXXXXXXXXXSREGAARLSSDTAAARHGSRAPPVDDRGPSTTAWAADAXXXXXXXX----SLPQGSSDMGAPRYS-LYSVRGERQQVEAGRGVARAEKRPIRGSGEGGTPGERGGGAGQNGADSSGTAVGRSKRRAV 1979
N+PPRQTST RGGGSSG +KQAEGDRN+ +G G XXXXX XXX APASFL+KLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDE+SCEF+HQNFRKGQRHLLGLIRRKAHSTS VA QETKGSVDRIA++LRAMCNRVTHLEAEMGMIKHRH LR ES LLRL+LSEGGRRLEEKALAVLGQLPHTSGE ELS L S+ LHPEDH+QEQHXXXXXXXXXXXX TDERGP PMPE+ PPA RGS GGERF AGGA E GD +ARGGG VGAA RYSRSGAALASVVAA LASNASEED A HDP RP LGGPGRE AW GM PNVDLSSPSRG ATA FSGPAAAGSG GAAEFGXXXXXXXXXS EGAARLSSD AAA GSRAPPVDDRG STTA A XXXXXXXX SLPQGSS PR S LY+VRG R+QVEAGRG GSGEGGTPGERG QNGAD SGT V R KRRAV
Sbjct: 2 NKPPRQTSTSRGGGSSGDKKQAEGDRNLVKHIGGGGAATAVGAAAAPTPXXXXXAGGRXXXXXXXXXXXXXXXXXXXXAPASFLNKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEESCEFQHQNFRKGQRHLLGLIRRKAHSTS-------------------------------------------VAAQETKGSVDRIAVELRAMCNRVTHLEAEMGMIKHRHNHLRVESRALLRLLLSEGGRRLEEKALAVLGQLPHTSGEAELSGLPSVVLHPEDHEQEQHXXXXXXXXXXXXXXQYTDERGPIPMPEE-PPAHFRGSDLGGERFGAGGAAEVGDPTARGGG-VGAA-RYSRSGAALASVVAAALASNASEEDXXXXXXXXXXXXXALHDPPRPRLGGPGRETAWGGMAPNVDLSSPSRGLATA-TFSGPAAAGSGTGAAEFGXXXXXXXXXSEEGAARLSSDAAAASKGSRAPPVDDRGRSTTAVARXXXXXXXXXXXXXXSLPQGSS----PRCSYLYAVRGGREQVEAGRGGXXXXXXXXXGSGEGGTPGERGXXXXQNGADHSGT-VARGKRRAV 571
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A8C1G7L3_CYPCA (Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G7L3_CYPCA) HSP 1 Score: 103 bits (256), Expect = 4.580e-22 Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLIRRK 674
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF++ Q HLLGLIRRK
Sbjct: 15 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVDCVEFQHENFQRAQPHLLGLIRRK 117
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A8C1UXT7_CYPCA (Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1UXT7_CYPCA) HSP 1 Score: 104 bits (259), Expect = 1.370e-21 Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLIRRK 674
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF+K Q HLLGLIRRK
Sbjct: 9 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLSKADSQVDCVEFQHENFQKAQPHLLGLIRRK 111
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A672NZZ5_SINGR (Si:dkey-18a10.3 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NZZ5_SINGR) HSP 1 Score: 102 bits (253), Expect = 1.730e-21 Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLIRRK 674
+F+ KLW ++ P + I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D + EF+H+NF++ Q HLLGLIRRK
Sbjct: 15 AFVSKLWTLVEAPSTNDLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVNCVEFQHENFQRAQPHLLGLIRRK 117
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A316V749_9BASI (Winged helix DNA-binding domain-containing protein (Fragment) n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V749_9BASI) HSP 1 Score: 100 bits (248), Expect = 1.760e-21 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDS----CEFKHQNFRKGQRHLLGLIRRK 674
SF+ KL+++L + + + I W G V +PA+FAK VLP ++KH+N+QSFVRQLN+YGFHK H G + EFKH NFR+G+ HLL I+RK
Sbjct: 1 SFVSKLYSMLEDDTIEEMIAWGPSGTTFSVANPAEFAKVVLPNWFKHSNWQSFVRQLNMYGFHKVNHTYQGTPEEEIQVWEFKHPNFRRGEVHLLSEIKRK 101
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A8C2I2H2_CYPCA (Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2I2H2_CYPCA) HSP 1 Score: 104 bits (259), Expect = 2.330e-21 Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLIRRK 674
+F+ KLW ++ P I W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D D D EF+H+NF+K Q HLLGLIRRK
Sbjct: 9 AFVSKLWALVEAPSTDNLICWSQDGCSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADSQVDCVEFQHENFQKAQPHLLGLIRRK 111
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A7S2G5V1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G5V1_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.280e-21 Identity = 52/105 (49.52%), Postives = 76/105 (72.38%), Query Frame = 3
Query: 378 PASFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDDDGDEDSCEFKHQNFRKGQRHLLGLIRRKAHSTSA 692
PA+FL+KL++IL + S+HI W+ +G I++ FAK+VLPK++KH+N+QSFVRQLN+Y F KTRHD + EF+ NF++G+R++L I+RK TSA
Sbjct: 93 PAAFLEKLYDILEDTIYSEHICWSMEGQSILIKKVDSFAKSVLPKFFKHSNFQSFVRQLNMYAFSKTRHDPNW----REFRQPNFQRGKRNMLKFIKRKTSDTSA 193
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A498LEZ8_LABRO (Heat shock factor 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LEZ8_LABRO) HSP 1 Score: 107 bits (268), Expect = 4.710e-21 Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLIRRK 674
+F+ KLW ++ P + I+W+QDG +V +F+K VLP Y+KH+N SFVRQLN+YGFHK H D DG + EF+H+NFR+ Q HLLGLIRRK
Sbjct: 9 AFVSKLWTLVEAPSTNNLISWSQDGGSFLVQDEQRFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDAGLPKADGQVNCVEFQHENFRRAQPHLLGLIRRK 111
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Match: A0A8C2E852_CYPCA (Si:dkey-18a10.3 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2E852_CYPCA) HSP 1 Score: 100 bits (250), Expect = 6.980e-21 Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query: 384 SFLDKLWNILNEPHLSKHITWNQDGDGIVVNHPAQFAKAVLPKYYKHNNYQSFVRQLNIYGFHKTRHDD------DGDEDSCEFKHQNFRKGQRHLLGLI 665
+F+ KLW ++ P + I W+QDG +V QF+K VLP Y+KH+N SFVRQLN+YGFHK H D DG + EF+H+NF++ Q HLLGLI
Sbjct: 9 AFVSKLWTLVEAPSTNDLICWSQDGCSFLVQDEQQFSKEVLPLYFKHSNMTSFVRQLNMYGFHKVVHMDSGLPKSDGQVNCVEFQHENFQRAQPHLLGLI 108 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1461.3320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1461.3320.1 >prot_E-fasciculatus_F_contig1461.3320.1 ID=prot_E-fasciculatus_F_contig1461.3320.1|Name=mRNA_E-fasciculatus_F_contig1461.3320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=599bp MNNQPPRQTSTKRGGGSSGYRKQAEGDRNVGLPVGAGAGGGGGGGGGGGGback to top mRNA from alignment at E-fasciculatus_F_contig1461:47..6461+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1461.3320.1 ID=mRNA_E-fasciculatus_F_contig1461.3320.1|Name=mRNA_E-fasciculatus_F_contig1461.3320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6415bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1461:47..6461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1461:47..6461+ >mRNA_E-fasciculatus_F_contig1461.3320.1 ID=mRNA_E-fasciculatus_F_contig1461.3320.1|Name=mRNA_E-fasciculatus_F_contig1461.3320.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1461:47..6461+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |