mRNA_E-fasciculatus_F_contig14606.3317.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14606.3317.1
Unique NamemRNA_E-fasciculatus_F_contig14606.3317.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14606.3317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14606contigE-fasciculatus_F_contig14606:4..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size320
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.4768295-CDS-E-fasciculatus_F_contig14606:3..3151622927947.4768295-CDS-E-fasciculatus_F_contig14606:3..315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14606 4..315 +
1695995761.9793818-CDS-E-fasciculatus_F_contig14606:3..3151695995761.9793818-CDS-E-fasciculatus_F_contig14606:3..315Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14606 4..315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927947.492887-UTR-E-fasciculatus_F_contig14606:315..3211622927947.492887-UTR-E-fasciculatus_F_contig14606:315..321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14606 316..321 +
1695995761.9967213-UTR-E-fasciculatus_F_contig14606:315..3211695995761.9967213-UTR-E-fasciculatus_F_contig14606:315..321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14606 316..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14606.3317.1prot_E-fasciculatus_F_contig14606.3317.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14606 4..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14606.3317.1

>prot_E-fasciculatus_F_contig14606.3317.1 ID=prot_E-fasciculatus_F_contig14606.3317.1|Name=mRNA_E-fasciculatus_F_contig14606.3317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
RLRRAKGGCCHSFTAVWRKSTGHGWSFCRGIVECEIRSSGVRNFAMFVLS
SPPLRPLASDSRQGCKRGLCTMFGFGRKLLRLESECVRPTHDFFSIVGVD
ASI*
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mRNA from alignment at E-fasciculatus_F_contig14606:4..321+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14606.3317.1 ID=mRNA_E-fasciculatus_F_contig14606.3317.1|Name=mRNA_E-fasciculatus_F_contig14606.3317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14606:4..321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCTGAGGAGGGCGAAAGGGGGGTGTTGTCACTCTTTTACGGCGGTGTG
GCGTAAGAGTACCGGCCATGGTTGGAGTTTCTGCAGGGGTATCGTGGAAT
GTGAAATACGAAGCAGTGGAGTACGAAATTTTGCAATGTTTGTATTATCT
TCTCCACCCCTTCGCCCCCTCGCCAGCGACAGTCGCCAAGGTTGCAAAAG
GGGGCTATGTACAATGTTTGGCTTTGGAAGGAAACTCTTGCGTCTTGAAT
CCGAGTGTGTTCGACCCACACACGACTTCTTCAGTATTGTTGGTGTAGAT
GCTTCCATCTAGGTGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14606:4..321+

>mRNA_E-fasciculatus_F_contig14606.3317.1 ID=mRNA_E-fasciculatus_F_contig14606.3317.1|Name=mRNA_E-fasciculatus_F_contig14606.3317.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14606:4..321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTCTGAGGAGGGCGAAAGGGGGGTGTTGTCACTCTTTTACGGCGGTGTG
GCGTAAGAGTACCGGCCATGGTTGGAGTTTCTGCAGGGGTATCGTGGAAT
GTGAAATACGAAGCAGTGGAGTACGAAATTTTGCAATGTTTGTATTATCT
TCTCCACCCCTTCGCCCCCTCGCCAGCGACAGTCGCCAAGGTTGCAAAAG
GGGGCTATGTACAATGTTTGGCTTTGGAAGGAAACTCTTGCGTCTTGAAT
CCGAGTGTGTTCGACCCACACACGACTTCTTCAGTATTGTTGGTGTAGAT
GCTTCCATCTAGCGTCTGAGGAGGGCGAAAGGGGGGTGTTGTCACTCTTT
TACGGCGGTGTGGCGTAAGAGTACCGGCCATGGTTGGAGTTTCTGCAGGG
GTATCGTGGAATGTGAAATACGAAGCAGTGGAGTACGAAATTTTGCAATG
TTTGTATTATCTTCTCCACCCCTTCGCCCCCTCGCCAGCGACAGTCGCCA
AGGTTGCAAAAGGGGGCTATGTACAATGTTTGGCTTTGGAAGGAAACTCT
TGCGTCTTGAATCCGAGTGTGTTCGACCCACACACGACTTCTTCAGTATT
GTTGGTGTAGATGCTTCCATCTAG
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