mRNA_E-fasciculatus_F_contig146.3313.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig146.3313.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI) HSP 1 Score: 354 bits (908), Expect = 1.580e-108 Identity = 314/328 (95.73%), Postives = 316/328 (96.34%), Query Frame = 1
Query: 214 ELSRSELPFKVGDVTLMALGEGCPGLQRLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTDAVVTAFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK 1197
ELSRSELPFKVGDVTLMALGEGCP LQ LSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTAL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVTDA V +FARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLE+LDLREV SLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK
Sbjct: 232 ELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALRSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAVTDAAVASFARGCRRLRRLCLRGVVGVPPPLGAPGILAVCSLCRDLELLDLREVLSLEDSALVGFHDHQMEKLEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIK 559
BLAST of mRNA_E-fasciculatus_F_contig146.3313.1 vs. uniprot
Match: A0A7S1U2X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.050e-15 Identity = 161/335 (48.06%), Postives = 196/335 (58.51%), Query Frame = 1
Query: 220 SRSELPFKVGDVTLMALGEGCPGLQRLSVKGCDGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVNLSDGMQRDFALTGVQALAKGCTGLQTLVLDGCFQISKTALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTDAVVTAFARGCRRLRRLCLRGV-VGVPPPLGAPGILAVCSLCRDLEVLDLREVWSLEDSALVGFHDHQMEK-LEKVVLMDCPKITGAGVQWLVAGCPALSSLNLKGTKATLTALNIIKERYPYSRIKARKAGGF 1218
SRSE PFKV D++LMALGE P L+ L + GC+ +TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSDGM+RDF L G+QAL +Q L L GCFQIS TA+ G + +V F R R CLR + + L G+ + + C L+ L+L L D A++ + Q L + L +C I+ AG+ W+ G +L +L+L+GT+ T TAL +I +RY YS + R A F
Sbjct: 313 SRSEFPFKVTDISLMALGERTPYLETLLLSGCNMLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLLSDGMKRDFGLEGLQALCGDLDEVQHLHLHGCFQISTTAMRAIANGLGAPLRSLSLSNCPKLTLNGMQALWEHCASLEYLSLNGCG---ENIVDNFFRPLVRRPAACLRTLELEDAECLTHTGVAYLVAGCPQLDKLNLSGCVGLNDEAMLHLGESQFYPGLRHLHLTNCTNISDAGLSWMSDGVDSLYTLSLRGTRCTYTALRVIADRYRYSHM-VRNANFF 643 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig146.3313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig146.3313.1 >prot_E-fasciculatus_F_contig146.3313.1 ID=prot_E-fasciculatus_F_contig146.3313.1|Name=mRNA_E-fasciculatus_F_contig146.3313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=412bp IGHWVLTRLFRGCRALETLSLARCSRVGDEELKELGVGCRGLVRLDLKDCback to top mRNA from alignment at E-fasciculatus_F_contig146:25741..29954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig146.3313.1 ID=mRNA_E-fasciculatus_F_contig146.3313.1|Name=mRNA_E-fasciculatus_F_contig146.3313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4214bp|location=Sequence derived from alignment at E-fasciculatus_F_contig146:25741..29954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig146:25741..29954- >mRNA_E-fasciculatus_F_contig146.3313.1 ID=mRNA_E-fasciculatus_F_contig146.3313.1|Name=mRNA_E-fasciculatus_F_contig146.3313.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2472bp|location=Sequence derived from alignment at E-fasciculatus_F_contig146:25741..29954- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |