mRNA_E-fasciculatus_F_contig14581.3303.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14581.3303.1
Unique NamemRNA_E-fasciculatus_F_contig14581.3303.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: D8LFC6_ECTSI (Homologue of the meiosis-specific protein HOP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC6_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.800e-45
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1
Query:   31 QVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            QVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAY+LTMWLESGVFKAVE+R
Sbjct:   46 QVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYDLTMWLESGVFKAVEHR 129          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A196S9B0_BLAHN (HOP1, HORMA domain containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S9B0_BLAHN)

HSP 1 Score: 81.3 bits (199), Expect = 2.940e-16
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   34 VTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            V++ QSL +VKN++R SIS +C+LR +F   CF ++ YAG+ I  L   T   + D+  + +QEA+ LT WLE GVF A+E R
Sbjct:   10 VSQQQSLAVVKNMVRTSISEICYLRNLFNEDCFSQKNYAGIMINALHPVTNGKEGDQPQIHNQEAWQLTRWLEEGVFDALEKR 92          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: W4FWS5_9STRA (HORMA domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWS5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.500e-15
Identity = 41/84 (48.81%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   31 QVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            ++TETQSL ++KNLIRVSIS +C+LR +FP + F+ER YA M+I  L  A ++   D+++   Q+AY++T WLE+G F A+E +
Sbjct:   33 KITETQSLNVIKNLIRVSISEICYLRNLFPDEVFKERVYADMQIKCL--APQENSRDQSM---QDAYSITEWLEAGAFDAMEKK 111          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A6G0XR20_9STRA (HORMA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR20_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.030e-13
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   16 TACRKQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            T    ++TETQS++++KN+IRVS+S +C+LR +FP + F+ER YA M I  L       D    V++D  AY +T WLE+G+F+A++ +
Sbjct:   27 TPASTKITETQSISVIKNMIRVSVSEICYLRNLFPEEVFKERVYADMHIKCLAPVEGSRDP---VMRD--AYCVTQWLEAGMFEAMDKK 110          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A482SLB7_9ARCH (HORMA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLB7_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 6.950e-13
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   73 IRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVE 276
            +R+SIS++C  R IFP+ C++ + Y  ++I+QL  A +D +  E VVK ++A+ LT WLE GVF A+E
Sbjct:    1 MRISISSICFFRDIFPSDCYKNKQYGNVQIHQLQGAQKDEE-GEVVVKHKDAFLLTQWLEKGVFSALE 67          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: D8M718_BLAHO (HORMA domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M718_BLAHO)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   34 VTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAA-TRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            VT+ QSL +VKN+IR SIS +C+LR +F   CF ++ YAG+ I  L    T++    E  + + EA+ LT WLE GVF A+E R
Sbjct:   10 VTQQQSLAVVKNMIRTSISEICYLRNLFDEDCFCKKNYAGIMINALHPMDTKEG--SEPHIHNSEAWQLTRWLEEGVFDALEKR 91          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A485K5J0_9STRA (Aste57867_1544 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5J0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.480e-12
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   16 TACRKQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAV 273
            T    ++T  QSL ++KN+IRVSIS +C+LR IFP + F+ER YA M+I  L  A  +   D ++V   +A+ +T WLE+G+F A+
Sbjct:   22 TPASTKITSEQSLNVIKNMIRVSISEICYLRNIFPEEVFRERVYADMRIKCL--APDEVSRDPSMV---DAFAITQWLEAGIFDAM 102          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A8K1FAY3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FAY3_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-10
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   28 KQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQE-AYNLTMWLESGVFKAVENR 282
            K +T  QS+ +++N+IRVS+S +C+LR +FP   F+ER YA M I  L      A   E   KD E A  +T WLE GVF+A+E +
Sbjct:   15 KGLTHIQSMNVIRNMIRVSVSEICYLRNLFPDDMFKERIYADMHIKCL------APQKEKTSKDAEDALLVTRWLEDGVFEALEKK 94          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: UPI001D04C4D8 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D04C4D8)

HSP 1 Score: 65.5 bits (158), Expect = 2.590e-10
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   28 KQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            + VT  +SLTL++NL+R +IS+VC+LR IFP  CFQ+++ +G+ I  L  A  +A T            L  WLE GVF+A++ +
Sbjct:   11 QSVTYEESLTLMRNLMRTAISSVCYLRNIFPEDCFQDKSLSGINIKSLQPANDEART------------LIDWLEKGVFEALKKK 83          
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Match: A0A6A5BFC5_NAEFO (HORMA domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BFC5_NAEFO)

HSP 1 Score: 65.1 bits (157), Expect = 3.690e-10
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   28 KQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYAGMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENR 282
            + VT  +SLTL++NL+R +IS+VC+LR IFP  CFQ+++ +G+ I  L  A  +A T            L  WLE GVF+A++ +
Sbjct:  653 QSVTFEESLTLMRNLMRTAISSVCYLRNIFPEDCFQDKSLSGINIKSLQPANDEART------------LIDWLEKGVFEALKKK 725          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14581.3303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LFC6_ECTSI2.800e-4597.62Homologue of the meiosis-specific protein HOP1 n=1... [more]
A0A196S9B0_BLAHN2.940e-1645.78HOP1, HORMA domain containing protein n=1 Tax=Blas... [more]
W4FWS5_9STRA2.500e-1548.81HORMA domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A6G0XR20_9STRA5.030e-1342.70HORMA domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A482SLB7_9ARCH6.950e-1345.59HORMA domain-containing protein n=1 Tax=archaeon T... [more]
D8M718_BLAHO1.430e-1246.43HORMA domain-containing protein n=1 Tax=Blastocyst... [more]
A0A485K5J0_9STRA2.480e-1244.19Aste57867_1544 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1FAY3_PYTOL1.880e-1044.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001D04C4D82.590e-1041.18uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BFC5_NAEFO3.690e-1041.18HORMA domain-containing protein n=1 Tax=Naegleria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14581contigE-fasciculatus_F_contig14581:690..1318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.5e-38
Seed eggNOG ortholog2880.D8LFC6
Preferred nameHORMAD1
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K03294,ko:K12778,ko:K15620,ko:K17616
KEGG TC2.A.3.2
KEGG ReactionR03656
KEGG Pathwayko00970,ko04113,map00970,map04113
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000075,GO:0000217,GO:0000226,GO:0000228,GO:0000280,GO:0000400,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000819,GO:0001701,GO:0001824,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004721,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007098,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008150,GO:0008152,GO:0009553,GO:0009554,GO:0009555,GO:0009556,GO:0009790,GO:0009792,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030997,GO:0031023,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033313,GO:0034293,GO:0034641,GO:0035825,GO:0036211,GO:0040020,GO:0042138,GO:0042578,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045144,GO:0045786,GO:0045835,GO:0046483,GO:0046605,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051026,GO:0051128,GO:0051129,GO:0051177,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051493,GO:0051598,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0060629,GO:0060631,GO:0061982,GO:0061983,GO:0065007,GO:0070013,GO:0070192,GO:0070193,GO:0070507,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1903046,GO:2000241,GO:2000242
EggNOG free text desc.regulation of homologous chromosome segregation
EggNOG OGsKOG4652@1,KOG4652@2759
EC6.1.1.5
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927944.8415668-CDS-E-fasciculatus_F_contig14581:689..8351622927944.8415668-CDS-E-fasciculatus_F_contig14581:689..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14581 690..835 -
1695995760.7770097-CDS-E-fasciculatus_F_contig14581:689..8351695995760.7770097-CDS-E-fasciculatus_F_contig14581:689..835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14581 690..835 -
1622927944.8610666-CDS-E-fasciculatus_F_contig14581:1170..13181622927944.8610666-CDS-E-fasciculatus_F_contig14581:1170..1318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14581 1171..1318 -
1695995760.8020072-CDS-E-fasciculatus_F_contig14581:1170..13181695995760.8020072-CDS-E-fasciculatus_F_contig14581:1170..1318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14581 1171..1318 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14581.3303.1prot_E-fasciculatus_F_contig14581.3303.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14581 690..1318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14581.3303.1

>prot_E-fasciculatus_F_contig14581.3303.1 ID=prot_E-fasciculatus_F_contig14581.3303.1|Name=mRNA_E-fasciculatus_F_contig14581.3303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
MVVLATACRKQVTETQSLTLVKNLIRVSISTVCHLRGIFPAKCFQERTYA
GMKIYQLDAATRDADTDETVVKDQEAYNLTMWLESGVFKAVENRLAV*
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mRNA from alignment at E-fasciculatus_F_contig14581:690..1318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14581.3303.1 ID=mRNA_E-fasciculatus_F_contig14581.3303.1|Name=mRNA_E-fasciculatus_F_contig14581.3303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=629bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14581:690..1318- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTTCTCGCCACGGCGTGCCGAAAGCAGGTGACGGAGACACAGTC TCTCACCCTGGTCAAGAACCTCATCCGGGTGTCCATCAGCACTGTTTGCC ATCTACGCGGCATCTTCCCCGCCAAGTGCTTCCAGGAGCGGACCTACGGT AAGCGAGAGCCCTCGGATAGCTGGACATAAGGTGGCTATGTATGTCAACC GCTGGCTGATGGTGCGCCATTTACTCCGGGGTGTTTCTATGATTAATGAC GTTACCCCACGAAAAATACACGAACTTTTCCCCCACAACGCGCTGCTGTG GCCACCCTCATAGATGCGCTCTGATATTTCCTACTTGCTGGATACATTCT CTGGCTCACACCAGGCCTGTTGCAGTTTAGTCTACAGCGATGTTGGTGTT TCTGCCAACCGCAGTGAATCGACACTACTAGTAGAGGAATCTGCACACAT TCCAAATTGCATTCGCCTGTGTCGCCAAACCAGCTGGCATGAAGATCTAT CAGCTAGATGCCGCGACGCGAGATGCCGACACTGACGAGACTGTGGTGAA AGACCAAGAAGCGTACAACCTCACCATGTGGCTCGAGTCGGGCGTCTTCA AGGCTGTCGAGAACAGGTTGGCGGTTTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14581:690..1318-

>mRNA_E-fasciculatus_F_contig14581.3303.1 ID=mRNA_E-fasciculatus_F_contig14581.3303.1|Name=mRNA_E-fasciculatus_F_contig14581.3303.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14581:690..1318- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGGTTCTCGCCACGGCGTGCCGAAAGCAGGTGACGGAGACACAGTC
TCTCACCCTGGTCAAGAACCTCATCCGGGTGTCCATCAGCACTGTTTGCC
ATCTACGCGGCATCTTCCCCGCCAAGTGCTTCCAGGAGCGGACCTACGAT
GGTGGTTCTCGCCACGGCGTGCCGAAAGCAGGTGACGGAGACACAGTCTC
TCACCCTGGTCAAGAACCTCATCCGGGTGTCCATCAGCACTGTTTGCCAT
CTACGCGGCATCTTCCCCGCCAAGTGCTTCCAGGAGCGGACCTACGCTGG
CATGAAGATCTATCAGCTAGATGCCGCGACGCGAGATGCCGACACTGACG
AGACTGTGGTGAAAGACCAAGAAGCGTACAACCTCACCATGTGGCTCGAG
TCGGGCGTCTTCAAGGCTGTCGAGAACAGGTTGGCGGTTTAACTGGCATG
AAGATCTATCAGCTAGATGCCGCGACGCGAGATGCCGACACTGACGAGAC
TGTGGTGAAAGACCAAGAAGCGTACAACCTCACCATGTGGCTCGAGTCGG
GCGTCTTCAAGGCTGTCGAGAACAGGTTGGCGGTTTAA
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