prot_E-fasciculatus_F_contig1458.3299.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1458.3299.1
Unique Nameprot_E-fasciculatus_F_contig1458.3299.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length306
Homology
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 4.700e-141
Identity = 264/303 (87.13%), Postives = 265/303 (87.46%), Query Frame = 0
Query:    1 GPNTPNKGPTSSAEPPRQLTGVSRSRAASAVMTFLERHRPAIVAATEREDCQKADDAEDADGPAEAAPXXXXXXXXXXXXXADLDGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNEHRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 303
            GPNTP KGPTSS EPPRQLTGVSRSRAASAVMTFLERHRPAI+AA EREDCQKADDAEDADGPA    XXXXXXXXXXXXX    GKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSL ACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDR              CVAPS SS  XXXXXXXXX    WTAPQFRRWLAAYLRELRLSSEPAHRALV RSVKPLLEADPALGLSVFLNEHRQA GLSHHGG LAQRRVG SRRAGGASADGRRAEA LAPHDVVSFLKT
Sbjct:  434 GPNTPKKGPTSSGEPPRQLTGVSRSRAASAVMTFLERHRPAILAAAEREDCQKADDAEDADGPAXXXXXXXXXXXXXXXXXXXXXGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLAACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDR--------------CVAPSSSSXXXXXXXXXXX----WTAPQFRRWLAAYLRELRLSSEPAHRALVLRSVKPLLEADPALGLSVFLNEHRQATGLSHHGGFLAQRRVGVSRRAGGASADGRRAEAGLAPHDVVSFLKT 718          
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: A0A6H5L3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y1_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.350e-80
Identity = 188/272 (69.12%), Postives = 195/272 (71.69%), Query Frame = 0
Query:   32 MTFLERHRPAIVAATEREDCQKADDAEDADGPAEAAPXXXXXXXXXXXXXADLDGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNEHRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 303
            MTFLERHRPAIVAA EREDCQKADD            XXXXXXXXXXXXX     KAGDTLVLLDTMLMSSYVQCSPPRHSALV                      P++   ++   R +    D       D Q  I          CVAPS SS  XXXXXXXXXX   WTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFL+E+RQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT
Sbjct:    1 MTFLERHRPAIVAAAEREDCQKADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTLVLLDTMLMSSYVQCSPPRHSALVR------------------GRAPTYETEIVMKVRLQRAETDG------DEQRSITR--------CVAPSSSSXXXXXXXXXXXX---WTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLDENRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 237          
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.870e-22
Identity = 64/163 (39.26%), Postives = 87/163 (53.37%), Query Frame = 0
Query:   94 LLDTMLMSSYVQCSPPRHSALVELLSGPNR---CSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNE 253
            LL+T+L+S+ + C+PPR  A++  LS  +R   C L A AP+LAA+G  F+EALL LYR +GLH +AL L +E+R              CV                     W   Q+RRW+A YL+ L  S +  H  L  R+   LL+ADP LGL+VF  E
Sbjct:  513 LLETVLVSARLHCAPPRREAIIAQLSDASRPCHCDLSATAPVLAAAGAPFVEALLWLYRSKGLHREALGLLSEER--------------CVGAG-----------------GWNKAQYRRWVAQYLQSLWFSDDAEHPPLALRAAPALLQADPRLGLTVFTGE 644          
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: F0YJL4_AURAN (CNH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL4_AURAN)

HSP 1 Score: 99.8 bits (247), Expect = 1.440e-19
Identity = 64/160 (40.00%), Postives = 83/160 (51.88%), Query Frame = 0
Query:   92 LVLLDTMLMSSYVQCSPPRHSALVELLSGPNR-CSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVF 250
            LVL+DTML+++++QCSPPR   +V LL  P++ C LE  APLLAA G  + E LL LYR +  H+ ALAL  EDR              C   +  S +             W   +FR W A YLR L  S EP + +L      P+    PALGL+VF
Sbjct:  560 LVLVDTMLIAAWLQCSPPRVEDVVFLLQDPSQQCELEYVAPLLAAGGALYAEPLLWLYRSKQAHQRALALLVEDR-------------CCAENNEGSQA-------------WDRDRFRCWKARYLRWLWFSGEPRNASLAIEHAAPVFSTAPALGLAVF 693          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8R8_ECTSI4.700e-14187.13CNH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3Y1_9PHAE1.350e-8069.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS55_9STRA1.870e-2239.26CNH domain-containing protein n=1 Tax=Tribonema mi... [more]
F0YJL4_AURAN1.440e-1940.00CNH domain-containing protein n=1 Tax=Aureococcus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019452Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1PFAMPF10366Vps39_1coord: 95..163
e-value: 4.8E-8
score: 33.3
IPR032914Vam6/VPS39/TRAP1 familyPANTHERPTHR12894CNH DOMAIN CONTAININGcoord: 13..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1458contigE-fasciculatus_F_contig1458:535..2855 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1458.3299.1mRNA_E-fasciculatus_F_contig1458.3299.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1458 535..2857 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1458.3299.1 ID=prot_E-fasciculatus_F_contig1458.3299.1|Name=mRNA_E-fasciculatus_F_contig1458.3299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp
GPNTPNKGPTSSAEPPRQLTGVSRSRAASAVMTFLERHRPAIVAATERED
CQKADDAEDADGPAEAAPAGGGEGDGGGSGNADLDGKAGDTLVLLDTMLM
SSYVQCSPPRHSALVELLSGPNRCSLEACAPLLAASGPSFIEALLCLYRG
RGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSGGSGGGGGGGG
GGWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVF
LNEHRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSF
LKTXXX
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032914Vam6/VPS39/TRAP1
IPR019452VPS39/TGF_beta_rcpt-assoc_1