mRNA_E-fasciculatus_F_contig1458.3299.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: D7G8R8_ECTSI (CNH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R8_ECTSI) HSP 1 Score: 437 bits (1124), Expect = 4.700e-141 Identity = 264/303 (87.13%), Postives = 265/303 (87.46%), Query Frame = 1
Query: 1 GPNTPNKGPTSSAEPPRQLTGVSRSRAASAVMTFLERHRPAIVAATEREDCQKADDAEDADGPAEAAPXXXXXXXXXXXXXADLDGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNEHRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 909
GPNTP KGPTSS EPPRQLTGVSRSRAASAVMTFLERHRPAI+AA EREDCQKADDAEDADGPA XXXXXXXXXXXXX GKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSL ACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDR CVAPS SS XXXXXXXXX WTAPQFRRWLAAYLRELRLSSEPAHRALV RSVKPLLEADPALGLSVFLNEHRQA GLSHHGG LAQRRVG SRRAGGASADGRRAEA LAPHDVVSFLKT
Sbjct: 434 GPNTPKKGPTSSGEPPRQLTGVSRSRAASAVMTFLERHRPAILAAAEREDCQKADDAEDADGPAXXXXXXXXXXXXXXXXXXXXXGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLAACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDR--------------CVAPSSSSXXXXXXXXXXX----WTAPQFRRWLAAYLRELRLSSEPAHRALVLRSVKPLLEADPALGLSVFLNEHRQATGLSHHGGFLAQRRVGVSRRAGGASADGRRAEAGLAPHDVVSFLKT 718
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: A0A6H5L3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y1_9PHAE) HSP 1 Score: 268 bits (685), Expect = 1.350e-80 Identity = 188/272 (69.12%), Postives = 195/272 (71.69%), Query Frame = 1
Query: 94 MTFLERHRPAIVAATEREDCQKADDAEDADGPAEAAPXXXXXXXXXXXXXADLDGKAGDTLVLLDTMLMSSYVQCSPPRHSALVELLSGPNRCSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNEHRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 909
MTFLERHRPAIVAA EREDCQKADD XXXXXXXXXXXXX KAGDTLVLLDTMLMSSYVQCSPPRHSALV P++ ++ R + D D Q I CVAPS SS XXXXXXXXXX WTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFL+E+RQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT
Sbjct: 1 MTFLERHRPAIVAAAEREDCQKADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGDTLVLLDTMLMSSYVQCSPPRHSALVR------------------GRAPTYETEIVMKVRLQRAETDG------DEQRSITR--------CVAPSSSSXXXXXXXXXXXX---WTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLDENRQAAGLSHHGGLLAQRRVGGSRRAGGASADGRRAEASLAPHDVVSFLKT 237
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: A0A835YS55_9STRA (CNH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS55_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.870e-22 Identity = 64/163 (39.26%), Postives = 87/163 (53.37%), Query Frame = 1
Query: 280 LLDTMLMSSYVQCSPPRHSALVELLSGPNR---CSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVFLNE 759
LL+T+L+S+ + C+PPR A++ LS +R C L A AP+LAA+G F+EALL LYR +GLH +AL L +E+R CV W Q+RRW+A YL+ L S + H L R+ LL+ADP LGL+VF E
Sbjct: 513 LLETVLVSARLHCAPPRREAIIAQLSDASRPCHCDLSATAPVLAAAGAPFVEALLWLYRSKGLHREALGLLSEER--------------CVGAG-----------------GWNKAQYRRWVAQYLQSLWFSDDAEHPPLALRAAPALLQADPRLGLTVFTGE 644
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Match: F0YJL4_AURAN (CNH domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL4_AURAN) HSP 1 Score: 99.8 bits (247), Expect = 1.440e-19 Identity = 64/160 (40.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query: 274 LVLLDTMLMSSYVQCSPPRHSALVELLSGPNR-CSLEACAPLLAASGPSFIEALLCLYRGRGLHEDALALATEDRQAVIVSWVLLAAVLCVAPSPSSYSXXXXXXXXXXXXXWTAPQFRRWLAAYLRELRLSSEPAHRALVPRSVKPLLEADPALGLSVF 750
LVL+DTML+++++QCSPPR +V LL P++ C LE APLLAA G + E LL LYR + H+ ALAL EDR C + S + W +FR W A YLR L S EP + +L P+ PALGL+VF
Sbjct: 560 LVLVDTMLIAAWLQCSPPRVEDVVFLLQDPSQQCELEYVAPLLAAGGALYAEPLLWLYRSKQAHQRALALLVEDR-------------CCAENNEGSQA-------------WDRDRFRCWKARYLRWLWFSGEPRNASLAIEHAAPVFSTAPALGLAVF 693 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1458.3299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1458.3299.1 >prot_E-fasciculatus_F_contig1458.3299.1 ID=prot_E-fasciculatus_F_contig1458.3299.1|Name=mRNA_E-fasciculatus_F_contig1458.3299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=306bp GPNTPNKGPTSSAEPPRQLTGVSRSRAASAVMTFLERHRPAIVAATEREDback to top mRNA from alignment at E-fasciculatus_F_contig1458:535..2857+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1458.3299.1 ID=mRNA_E-fasciculatus_F_contig1458.3299.1|Name=mRNA_E-fasciculatus_F_contig1458.3299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2323bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1458:535..2857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1458:535..2857+ >mRNA_E-fasciculatus_F_contig1458.3299.1 ID=mRNA_E-fasciculatus_F_contig1458.3299.1|Name=mRNA_E-fasciculatus_F_contig1458.3299.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1458:535..2857+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |