mRNA_E-fasciculatus_F_contig14574.3296.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14574.3296.1
Unique NamemRNA_E-fasciculatus_F_contig14574.3296.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14574.3296.1 vs. uniprot
Match: A0A6H5L434_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L434_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.680e-23
Identity = 54/70 (77.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 PPPTEP-VMDKPVAEWPKRADTAVPPWQPAVLPLEVASDVPPE--EECLPSPLCEKRVDPSKYEFGCEEI 201
            PPPTE  V DKPV EW K AD AV PW+PAVLPLE A D PP+  EECLPSPLCEKRVDPSK+EFGCEEI
Sbjct:  150 PPPTEETVKDKPVEEWAKTAD-AVSPWKPAVLPLEEAKDAPPDRGEECLPSPLCEKRVDPSKFEFGCEEI 218
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14574.3296.1 vs. uniprot
Match: A0A6H5J7B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.680e-10
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 EWPKRADTAVPPWQPAVLPLEVASDVPPEEECLPSPLCEKRVDPSKYEFGCEEI 201
            E P++    V PWQP +LP+EV  DVPPEE CL SPL +K VD S YEFGC+EI
Sbjct:  191 ERPQQKPDPVSPWQPPLLPVEVVRDVPPEE-CLRSPLWDKVVDESNYEFGCDEI 243
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14574.3296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L434_9PHAE2.680e-2377.14Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5J7B7_9PHAE2.680e-1061.11Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14574contigE-fasciculatus_F_contig14574:2935..3135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001260.1
Exons1
Model size201
Cds size180
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.9662716-UTR-E-fasciculatus_F_contig14574:2934..29551622927943.9662716-UTR-E-fasciculatus_F_contig14574:2934..2955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14574 2935..2955 +
1695995760.3789184-UTR-E-fasciculatus_F_contig14574:2934..29551695995760.3789184-UTR-E-fasciculatus_F_contig14574:2934..2955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14574 2935..2955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.9781733-CDS-E-fasciculatus_F_contig14574:2955..31351622927943.9781733-CDS-E-fasciculatus_F_contig14574:2955..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14574 2956..3135 +
1695995760.3869908-CDS-E-fasciculatus_F_contig14574:2955..31351695995760.3869908-CDS-E-fasciculatus_F_contig14574:2955..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14574 2956..3135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14574.3296.1prot_E-fasciculatus_F_contig14574.3296.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14574 2956..3135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14574.3296.1

>prot_E-fasciculatus_F_contig14574.3296.1 ID=prot_E-fasciculatus_F_contig14574.3296.1|Name=mRNA_E-fasciculatus_F_contig14574.3296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=60bp
MDKPVAEWPKRADTAVPPWQPAVLPLEVASDVPPEEECLPSPLCEKRVDP
SKYEFGCEEI
back to top

mRNA from alignment at E-fasciculatus_F_contig14574:2935..3135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14574.3296.1 ID=mRNA_E-fasciculatus_F_contig14574.3296.1|Name=mRNA_E-fasciculatus_F_contig14574.3296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=201bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14574:2935..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCCGCCAACGGAACCGGTGATGGATAAACCTGTTGCGGAGTGGCCGAA
AAGAGCGGATACAGCAGTGCCACCCTGGCAGCCTGCGGTTCTGCCGCTGG
AAGTGGCGAGTGACGTCCCGCCAGAGGAGGAGTGTTTGCCGAGCCCGTTG
TGCGAAAAGAGAGTTGACCCGTCCAAGTACGAGTTTGGGTGCGAGGAAAT
A
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14574:2935..3135+

>mRNA_E-fasciculatus_F_contig14574.3296.1 ID=mRNA_E-fasciculatus_F_contig14574.3296.1|Name=mRNA_E-fasciculatus_F_contig14574.3296.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14574:2935..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATAAACCTGTTGCGGAGTGGCCGAAAAGAGCGGATACAGCAGTGCC
ACCCTGGCAGCCTGCGGTTCTGCCGCTGGAAGTGGCGAGTGACGTCCCGC
CAGAGGAGGAGTGTTTGCCGAGCCCGTTGTGCGAAAAGAGAGTTGACCCG
TCCAAGTACGAGTTTGGGTGCGAGGAAATAATGGATAAACCTGTTGCGGA
GTGGCCGAAAAGAGCGGATACAGCAGTGCCACCCTGGCAGCCTGCGGTTC
TGCCGCTGGAAGTGGCGAGTGACGTCCCGCCAGAGGAGGAGTGTTTGCCG
AGCCCGTTGTGCGAAAAGAGAGTTGACCCGTCCAAGTACGAGTTTGGGTG
CGAGGAAATA
back to top