mRNA_E-fasciculatus_F_contig14572.3295.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14572.3295.1
Unique NamemRNA_E-fasciculatus_F_contig14572.3295.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14572.3295.1 vs. uniprot
Match: A0A6H5JXK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.850e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   10 QDGNVIGGDFRLGFSGYTTSTIAYDATASELGKALTDLPSIDSVEV 147
            QDGNVIGGDFRLGFSGYTTSTI+YDATASELGKAL DLPSIDSV+V
Sbjct:  102 QDGNVIGGDFRLGFSGYTTSTISYDATASELGKALADLPSIDSVDV 147
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BLAST of mRNA_E-fasciculatus_F_contig14572.3295.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.850e-19
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   10 QDGNVIGGDFRLGFSGYTTSTIAYDATASELGKALTDLPSIDSVEV 147
            QDGNVIGGDFRLGFSGYTTSTI+YDATASELGKAL DLPSIDSV+V
Sbjct:  245 QDGNVIGGDFRLGFSGYTTSTISYDATASELGKALADLPSIDSVDV 290
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14572.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXK7_9PHAE8.850e-1993.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNA6_ECTSI8.850e-1993.48Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14572contigE-fasciculatus_F_contig14572:1675..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.7e-15
Seed eggNOG ortholog2880.D7FNA6
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.9278357-CDS-E-fasciculatus_F_contig14572:1674..18391622927943.9278357-CDS-E-fasciculatus_F_contig14572:1674..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14572 1675..1839 +
1695995760.368616-CDS-E-fasciculatus_F_contig14572:1674..18391695995760.368616-CDS-E-fasciculatus_F_contig14572:1674..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14572 1675..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14572.3295.1prot_E-fasciculatus_F_contig14572.3295.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14572 1675..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14572.3295.1

>prot_E-fasciculatus_F_contig14572.3295.1 ID=prot_E-fasciculatus_F_contig14572.3295.1|Name=mRNA_E-fasciculatus_F_contig14572.3295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp
MYRQDGNVIGGDFRLGFSGYTTSTIAYDATASELGKALTDLPSIDSVEVS
ARRFR
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mRNA from alignment at E-fasciculatus_F_contig14572:1675..1839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14572.3295.1 ID=mRNA_E-fasciculatus_F_contig14572.3295.1|Name=mRNA_E-fasciculatus_F_contig14572.3295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14572:1675..1839+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACCGACAGGATGGCAACGTGATCGGTGGAGACTTTCGCCTGGGCTT
CAGCGGTTACACGACATCGACCATTGCCTACGATGCCACTGCGTCTGAGC
TTGGCAAGGCTCTTACTGATCTACCTAGCATCGATTCCGTAGAAGTGAGT
GCCAGACGATTTCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14572:1675..1839+

>mRNA_E-fasciculatus_F_contig14572.3295.1 ID=mRNA_E-fasciculatus_F_contig14572.3295.1|Name=mRNA_E-fasciculatus_F_contig14572.3295.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14572:1675..1839+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACCGACAGGATGGCAACGTGATCGGTGGAGACTTTCGCCTGGGCTT
CAGCGGTTACACGACATCGACCATTGCCTACGATGCCACTGCGTCTGAGC
TTGGCAAGGCTCTTACTGATCTACCTAGCATCGATTCCGTAGAAGTGAGT
GCCAGACGATTTCGAATGTACCGACAGGATGGCAACGTGATCGGTGGAGA
CTTTCGCCTGGGCTTCAGCGGTTACACGACATCGACCATTGCCTACGATG
CCACTGCGTCTGAGCTTGGCAAGGCTCTTACTGATCTACCTAGCATCGAT
TCCGTAGAAGTGAGTGCCAGACGATTTCGA
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