mRNA_E-fasciculatus_F_contig14570.3294.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14570.3294.1
Unique NamemRNA_E-fasciculatus_F_contig14570.3294.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14570.3294.1 vs. uniprot
Match: D7FK98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK98_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 6.520e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRL 141
            SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRL
Sbjct:    7 SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRL 53
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BLAST of mRNA_E-fasciculatus_F_contig14570.3294.1 vs. uniprot
Match: A0A6H5JRA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.220e-21
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRLEWRD 153
            SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKR+   D
Sbjct:   30 SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRVLGND 80
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14570.3294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK98_ECTSI6.520e-22100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA7_9PHAE1.220e-2192.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14570contigE-fasciculatus_F_contig14570:1282..2072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.6e-18
Seed eggNOG ortholog2880.D7FK98
EggNOG OGs2D56T@1,2SXJ3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.71401-CDS-E-fasciculatus_F_contig14570:1281..14141622927943.71401-CDS-E-fasciculatus_F_contig14570:1281..1414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14570 1282..1414 -
1695995760.3447864-CDS-E-fasciculatus_F_contig14570:1281..14141695995760.3447864-CDS-E-fasciculatus_F_contig14570:1281..1414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14570 1282..1414 -
1622927943.8957617-CDS-E-fasciculatus_F_contig14570:1932..20721622927943.8957617-CDS-E-fasciculatus_F_contig14570:1932..2072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14570 1933..2072 -
1695995760.3596938-CDS-E-fasciculatus_F_contig14570:1932..20721695995760.3596938-CDS-E-fasciculatus_F_contig14570:1932..2072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14570 1933..2072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14570.3294.1prot_E-fasciculatus_F_contig14570.3294.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14570 1282..2072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14570.3294.1

>prot_E-fasciculatus_F_contig14570.3294.1 ID=prot_E-fasciculatus_F_contig14570.3294.1|Name=mRNA_E-fasciculatus_F_contig14570.3294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=91bp
SSLWVFGGQGAATSKADSSRTHQGVKIRTLARRTCFNDFFEFDTKRLEWR
DHVQAGVCPTSRRGHTATLVLGRRPEMSPRDPQTPSERDAA
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mRNA from alignment at E-fasciculatus_F_contig14570:1282..2072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14570.3294.1 ID=mRNA_E-fasciculatus_F_contig14570.3294.1|Name=mRNA_E-fasciculatus_F_contig14570.3294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=791bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14570:1282..2072- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCGCTTTGGGTCTTCGGAGGGCAAGGAGCAGCGACGTCAAAGGCGGA
CTCATCTCGCACCCACCAGGGCGTCAAGATCAGGACTCTCGCCAGGCGTA
CTTGTTTCAACGACTTTTTCGAGTTCGACACGAAAAGGCTGTGAGTTTAG
AGACAGAAAAACGGGGCATGTATTGTTTGCTATTGGTAATAGAAACTTCA
AGTGGCCTCAAGACCTAGCATCGATGACATAAGAAGATGAAAGAAATAAG
GTCTAGCATAGCTGCCCGTCAAAAGATCTCGGTAAGATATCTCCCAGAAA
TGGGGGGTTGGTGGGCTTCCACATCTCCTTGAGCTCGTCATGTTGATATG
AATGCAACAACAAGCAACATATCACTCCTTCCGCACCCGGCTCTCGCCGA
AAAACCTAACGGCCTCTCGGCAAAAACGTTTTGTTTCCACCTTTCTTAGG
GCGTCGATGTCTGCGTGCTTGTTCGTTCTTTCGTGTTTTCTCGCGCATCA
AACAATCCGGAAGATTTCGACCTCGTTCACGGGCGTGAGACTGCCAACAC
TAACCCGCTTGTTTATGTATTGTACCAGCTTTTGTTTGTGTTGCGCCAGT
TGACCTGTTTGGTTTCATGTTTTGTTGTTATGCTCGTTTGACTCCGCTTC
TCGAAAAGAGAGTGGCGGGACCACGTCCAGGCGGGAGTCTGCCCCACCTC
GAGGCGTGGGCACACCGCGACCCTCGTCCTAGGGCGGCGACCCGAGATGA
GTCCACGGGACCCCCAAACCCCCTCCGAGCGTGATGCTGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14570:1282..2072-

>mRNA_E-fasciculatus_F_contig14570.3294.1 ID=mRNA_E-fasciculatus_F_contig14570.3294.1|Name=mRNA_E-fasciculatus_F_contig14570.3294.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14570:1282..2072- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGTCGCTTTGGGTCTTCGGAGGGCAAGGAGCAGCGACGTCAAAGGCGGA
CTCATCTCGCACCCACCAGGGCGTCAAGATCAGGACTCTCGCCAGGCGTA
CTTGTTTCAACGACTTTTTCGAGTTCGACACGAAAAGGCTTCGTCGCTTT
GGGTCTTCGGAGGGCAAGGAGCAGCGACGTCAAAGGCGGACTCATCTCGC
ACCCACCAGGGCGTCAAGATCAGGACTCTCGCCAGGCGTACTTGTTTCAA
CGACTTTTTCGAGTTCGACACGAAAAGGCTAGAGTGGCGGGACCACGTCC
AGGCGGGAGTCTGCCCCACCTCGAGGCGTGGGCACACCGCGACCCTCGTC
CTAGGGCGGCGACCCGAGATGAGTCCACGGGACCCCCAAACCCCCTCCGA
GCGTGATGCTGCCAGAGTGGCGGGACCACGTCCAGGCGGGAGTCTGCCCC
ACCTCGAGGCGTGGGCACACCGCGACCCTCGTCCTAGGGCGGCGACCCGA
GATGAGTCCACGGGACCCCCAAACCCCCTCCGAGCGTGATGCTGCC
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