mRNA_E-fasciculatus_F_contig14568.3292.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14568.3292.1
Unique NamemRNA_E-fasciculatus_F_contig14568.3292.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14568.3292.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 5.820e-48
Identity = 119/183 (65.03%), Postives = 123/183 (67.21%), Query Frame = 1 
Query:    1 GDAGGGRFEGPARAGXXXXXXXXXXXXXXXXXXXXXXXXSSRGSKRGRSSEPERSXXXXXXXLGYDGPGSAEGDPSQAFDSKRMRQPDQTMMPQPEGGGGRRGSVKSPVDRWGRGHGXXXXXXP---WEREGPAAPSDANSGRYHDDLRHGXXXXG-----RMQMPSHEMPDRPAAYEARGRG 525
            GDAGG RFEGPARAG                         SRGSKRGRS+EPERS        GYDGPGSAEGDPSQAFDSKRMRQPDQ MMP PEGGGGRRGS KS  DRWGRG+GXXXXXX    WEREGPAAP+DAN           XXXX      RMQMPSHE+PDRPAAYEARGRG
Sbjct: 2060 GDAGGVRFEGPARAGGGQRTTAESSRSGGGA--------GSRGSKRGRSAEPERSGGRDGG--GYDGPGSAEGDPSQAFDSKRMRQPDQAMMPHPEGGGGRRGSAKSSADRWGRGYGXXXXXXXXXXWEREGPAAPNDANXXXXXXXXXXXXXXXXXXXXXRMQMPSHEVPDRPAAYEARGRG 2232
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14568.3292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI5.820e-4865.03THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14568contigE-fasciculatus_F_contig14568:1427..1951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue6.1e-43
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
Ec32 ortholog descriptionTHO complex, subunitTHOC2, C-terminal
Ec32 orthologEc-11_000130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927943.2587953-CDS-E-fasciculatus_F_contig14568:1426..19511622927943.2587953-CDS-E-fasciculatus_F_contig14568:1426..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14568 1427..1951 +
1695995760.0879385-CDS-E-fasciculatus_F_contig14568:1426..19511695995760.0879385-CDS-E-fasciculatus_F_contig14568:1426..1951Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14568 1427..1951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14568.3292.1prot_E-fasciculatus_F_contig14568.3292.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14568 1427..1951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14568.3292.1

>prot_E-fasciculatus_F_contig14568.3292.1 ID=prot_E-fasciculatus_F_contig14568.3292.1|Name=mRNA_E-fasciculatus_F_contig14568.3292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=175bp
GDAGGGRFEGPARAGGGQRTTAESSRSGGGGGGGGGGGASSRGSKRGRSS
EPERSGGRDGGGLGYDGPGSAEGDPSQAFDSKRMRQPDQTMMPQPEGGGG
RRGSVKSPVDRWGRGHGGGGGGGPWEREGPAAPSDANSGRYHDDLRHGGG
GGGRMQMPSHEMPDRPAAYEARGRG
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mRNA from alignment at E-fasciculatus_F_contig14568:1427..1951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14568.3292.1 ID=mRNA_E-fasciculatus_F_contig14568.3292.1|Name=mRNA_E-fasciculatus_F_contig14568.3292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14568:1427..1951+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGATGCCGGGGGGGGGCGATTCGAAGGCCCCGCGCGTGCGGGGGGTGG
GCAACGGACGACGGCCGAATCTAGCCGTAGCGGAGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGCCAGCTCCCGCGGCAGCAAGAGGGGACGCAGCTCC
GAGCCTGAGCGAAGCGGGGGCAGAGACGGCGGCGGGTTAGGGTATGACGG
TCCGGGCAGCGCCGAGGGAGACCCTAGCCAGGCCTTCGACAGCAAGCGCA
TGCGGCAGCCGGACCAGACGATGATGCCGCAGCCGGAGGGCGGCGGCGGG
AGAAGGGGCTCCGTGAAATCTCCGGTGGATCGTTGGGGTCGGGGGCACGG
CGGCGGCGGCGGCGGTGGACCATGGGAGCGGGAAGGGCCCGCCGCACCCA
GTGATGCGAACAGCGGGCGCTATCACGATGACCTTAGGCATGGAGGCGGC
GGCGGGGGAAGGATGCAAATGCCGTCTCACGAGATGCCAGACAGGCCGGC
GGCGTACGAAGCCCGCGGTAGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14568:1427..1951+

>mRNA_E-fasciculatus_F_contig14568.3292.1 ID=mRNA_E-fasciculatus_F_contig14568.3292.1|Name=mRNA_E-fasciculatus_F_contig14568.3292.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14568:1427..1951+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGATGCCGGGGGGGGGCGATTCGAAGGCCCCGCGCGTGCGGGGGGTGG
GCAACGGACGACGGCCGAATCTAGCCGTAGCGGAGGTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGCCAGCTCCCGCGGCAGCAAGAGGGGACGCAGCTCC
GAGCCTGAGCGAAGCGGGGGCAGAGACGGCGGCGGGTTAGGGTATGACGG
TCCGGGCAGCGCCGAGGGAGACCCTAGCCAGGCCTTCGACAGCAAGCGCA
TGCGGCAGCCGGACCAGACGATGATGCCGCAGCCGGAGGGCGGCGGCGGG
AGAAGGGGCTCCGTGAAATCTCCGGTGGATCGTTGGGGTCGGGGGCACGG
CGGCGGCGGCGGCGGTGGACCATGGGAGCGGGAAGGGCCCGCCGCACCCA
GTGATGCGAACAGCGGGCGCTATCACGATGACCTTAGGCATGGAGGCGGC
GGCGGGGGAAGGATGCAAATGCCGTCTCACGAGATGCCAGACAGGCCGGC
GGCGTACGAAGCCCGCGGTAGGGGGGGTGATGCCGGGGGGGGGCGATTCG
AAGGCCCCGCGCGTGCGGGGGGTGGGCAACGGACGACGGCCGAATCTAGC
CGTAGCGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCCAGCTCCCG
CGGCAGCAAGAGGGGACGCAGCTCCGAGCCTGAGCGAAGCGGGGGCAGAG
ACGGCGGCGGGTTAGGGTATGACGGTCCGGGCAGCGCCGAGGGAGACCCT
AGCCAGGCCTTCGACAGCAAGCGCATGCGGCAGCCGGACCAGACGATGAT
GCCGCAGCCGGAGGGCGGCGGCGGGAGAAGGGGCTCCGTGAAATCTCCGG
TGGATCGTTGGGGTCGGGGGCACGGCGGCGGCGGCGGCGGTGGACCATGG
GAGCGGGAAGGGCCCGCCGCACCCAGTGATGCGAACAGCGGGCGCTATCA
CGATGACCTTAGGCATGGAGGCGGCGGCGGGGGAAGGATGCAAATGCCGT
CTCACGAGATGCCAGACAGGCCGGCGGCGTACGAAGCCCGCGGTAGGGGG
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